Cluster set at subtree whose root is 'Retortamonas'

Click here to see taxon by cluster Data Availability Matrix
Cluster IDParent clusterTaxIDsGIsLminLmaxMAD1Q2Tcfi3Defline of longest sequenceTree4
002620312050 0.994- 0.000Retortamonas sp. ATCC 50375 small subunit ribosomal RNA gene, complete sequence.-
121118481848 1.000- 0.000Retortamonas sp. Vale Fe-hydrogenase mRNA, complete cds.-
231120822082 1.000- 0.000Retortamonas sp. Vale Fe-hydrogenase mRNA, complete cds.-
341143864386 1.000- 0.000Retortamonas sp. Vale pyruvate:ferredoxin oxidoreductase mRNA, complete cds.-
451118091809 1.000- 0.000Retortamonas sp. VALE heat shock protein 90 (HSP90) gene, partial cds.-

  1 Maximum Alignment Density
  2 "Q" alignment comparison score between default Clustal W and Muscle alignments
  3 Level of resolution (consensus fork index) of the strict consensus tree built from the two bootstrap trees from Clustal W and Muscle alignments.
  4 Trees are unrooted majority rule consensus trees from 'fast bootstrap parsimony' algorithm in PAUP* 4.0 using default ClustalW alignments. Expect performance to deteriorate with low MAD or Q scores, large number of taxa, and high sequence divergence (largely owing to alignment problems). Only trees for (taxon) phylogenetically informative clusters with fewer than 1000 sequences are generated.


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