Cluster set at subtree whose root is 'Fornicata'

Click here to see taxon by cluster Data Availability Matrix
Cluster IDParent clusterTaxIDsGIsLminLmaxMAD1Q2Tcfi3Defline of longest sequenceTree4
0-32474751622 0.431- 0.000Giardia sp. mRNA for microtubule-associated protein beta-giardin.-
1-12285323 0.941- 0.000Giardia muris small subunit rRNA, 3' end, large subunit rRNA, 5' end, and 5.8S rRNA.-
2-11406406 1.000- 0.000Giardia muris large subunit rRNA, 3' end.-
3-1176687668 1.000- 0.000G.muris ribosomal RNA operon DNA encoding 16S, 23S and 5.8S ribosomal RNA.-
4-11906906 1.000- 0.000Giardia muris cysteine protease (GMCP1) mRNA, complete cds.-
5-22456477 0.978- 0.000Giardia ardeae triose phosphate isomerase (TPI) gene, partial cds.-
6-8176231204 0.659- 0.000Spironucleus vortens elongation factor-1 alpha gene, partial cds.
7-11430430 1.000- 0.000Giardia muris 18S ribosomal RNA gene, partial sequence.-
8-11707707 1.000- 0.000Giardia muris variant-specific surface protein 01 gene, partial cds.-
9-11766766 1.000- 0.000Giardia muris variant-specific surface protein 02 gene, partial cds.-
10-11706706 1.000- 0.000Giardia muris variant-specific surface protein 03 gene, partial cds.-
11-1110411041 1.000- 0.000Giardia muris variant-specific surface protein 04 gene, partial cds.-
12-11705705 1.000- 0.000Giardia muris variant-specific surface protein 05 gene, partial cds.-
13-1111211121 1.000- 0.000Giardia muris variant-specific surface protein 06 gene, partial cds.-
14-222616621 0.998- 0.000Giardia ardeae clone 1 actin gene, partial cds.-
15-11349349 1.000- 0.000Giardia ardeae small subunit rRNA, 3' end, large subunit rRNA, 5' end, and 5.8S rRNA.-
16-11407407 1.000- 0.000Giardia ardeae large subunit rRNA, 3' end.-
17-1133333333 1.000- 0.000G.ardeae genes for 5.8S rRNA, LSU rRNA and SSU rRNA.-
18-61813982354 0.636- 0.000Octomitus intestinalis small subunit ribosomal RNA gene, partial sequence.
19-2676901117 0.838- 0.000Giardia ardeae glutamate dehydrogenase (GDH) gene, partial cds.-
20-171812081630 0.901- 0.000Trepomonas agilis 18S ribosomal RNA gene.
21-10349931878 0.603- 0.000Spironucleus vortens alpha-tubulin gene, complete cds.
22-22888891 0.998- 0.000Diplomonad ATCC50380 glyceraldehyde-3-phosphate dehydrogenase gene, partial cds.-
23-11920920 1.000- 0.000Hexamita inflata dynein beta chain gene, partial cds.-
24-11928928 1.000- 0.000Hexamita inflata elongation factor 1-alpha gene, 3' UTR and partial cds.-
25-11813813 1.000- 0.000Hexamita inflata alpha-tubulin gene, 3' UTR and partial cds.-
26-11256256 1.000- 0.000Hexamita inflata translation initiation factor-2 gamma subunit gene, partial cds.-
27-1121012101 1.000- 0.000Hexamita inflata dynein heavy chain homolog (hdyhh) gene, complete cds.-
28-1210601060 1.000- 0.000Hexamita inflata enolase 2 gene, partial cds.-
29-1123692369 1.000- 0.000Hexamita inflata putative pyrophosphate-dependent phosphofructokinase (pp-pfk) gene, complete cds.-
30-11789789 1.000- 0.000Hexamita inflata glutamate dehydrogenase (gdh) gene, partial cds.-
31-4511411359 0.907- 0.000Diplomonad ATCC50330 beta tubulin gene, partial cds.
32-6716572278 0.786- 0.000Spironucleus barkhanus cytosolic heat shock protein 90 (HSP90) mRNA, complete cds.
33-1110591059 1.000- 0.000Hexamita sp. carbamate kinase (CBK) gene, complete cds.-
34-11537537 1.000- 0.000Spironucleus muris elongation factor 1 alpha gene, partial cds.-
35-11889889 1.000- 0.000Trepomonas agilis glceraldehyde-3-phosphate dehydrogenase gene, partial cds.-
36-1142944294 1.000- 0.000Trepomonas agilis 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.-
37-1113151315 1.000- 0.000Spironucleus vortens small subunit ribosomal RNA gene, partial sequence.-
38-1214661466 1.000- 0.000Spironucleus vortens small subunit rRNA gene, copy 1 , partial sequence.-
39-11631631 1.000- 0.000Spironucleus vortens translation initiation factor-2 gamma subunit gene, partial cds.-
40-1110571057 1.000- 0.000Spironucleus vortens enolase gene, partial cds.-
41-1111131113 1.000- 0.000Spironucleus vortens glutamate dehydrogenase (gdh) gene, partial cds.-
42-1119521952 1.000- 0.000Spironucleus vortens H3 histone gene, complete cds.-
43-444269513 0.624- 0.000Giardia psittaci small subunit ribosomal RNA gene, partial sequence.
44-12533533 1.000- 0.000Giardia microti isolate 3463 triosephosphate isomerase (TPI) gene, partial cds.-
45-222272384 0.828- 0.000Giardia microti isolate P519 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence.-
46-11658658 1.000- 0.000Spironucleus barkhanus triosephosphate isomerase (TPI) gene, partial cds.-
47-11848001446 0.719- 0.000Diplomonad ATCC50330 small subunit rRNA gene, copy 2, partial sequence.
48-11783783 1.000- 0.000Diplomonad ATCC50380 alpha-tubulin gene, 3' UTR and partial cds.-
49-1135493549 1.000- 0.000Spironucleus barkhanus pyruvate:ferredoxin oxidoreductase (PFO) mRNA, partial cds.-
50-11521521 1.000- 0.000Spironucleus barkhanus pyruvate:ferredoxin oxidoreductase (PFO) gene, partial cds.-
51-1116861686 1.000- 0.000Spironucleus barkhanus putative iron hydrogenase HydA gene, complete cds.-
52-11932932 1.000- 0.000Spironucleus barkhanus thioredoxin reductase mRNA, partial cds.-
53-1115551555 1.000- 0.000Spironucleus barkhanus glucose-6-phosphate isomerase (GPI) mRNA, partial cds.-
54-1110141014 1.000- 0.000Spironucleus barkhanus glucokinase-like protein mRNA, partial cds.-
55-1122572257 1.000- 0.000Spironucleus barkhanus sulfide dehydrogenase (sud) gene, partial cds.-
56-1110231023 1.000- 0.000Spironucleus barkhanus fructose-1,6-bisphosphate aldolase (FBA) mRNA, partial cds.-
57-1113991399 1.000- 0.000Spironucleus barkhanus glutamate dehydrogenase (gdh) mRNA, partial cds.-
58-1115391539 1.000- 0.000Spironucleus barkhanus CPN60 (cpn60) gene, complete cds.-
59-1119741974 1.000- 0.000Spironucleus barkhanus cytosolic heat shock protein 70 (hsp70) mRNA, partial cds.-
60-1118161816 1.000- 0.000Spironucleus barkhanus prolyl tRNA synthetase (proS) gene, partial cds.-
61-1119021902 1.000- 0.000Spironucleus barkhanus alanyl tRNA synthetase (alaS) mRNA, partial cds.-
62-1110861086 1.000- 0.000Spironucleus barkhanus branched chain amino acid transferase (ilvE) mRNA, partial cds.-
63-11918918 1.000- 0.000Spironucleus barkhanus threonine dehydratase (ilvA) gene, partial cds.-
64-1115941594 1.000- 0.000Spironucleus barkhanus CTP synthetase (pyrG) mRNA, partial cds.-
65-11414414 1.000- 0.000Spironucleus barkhanus deoxyribose-phosphate aldolase (deoC) gene, partial cds.-
66-11372372 1.000- 0.000Spironucleus barkhanus glucosamine-6-phosphate isomerase (nagB1) gene, partial cds.-
67-1133033303 1.000- 0.000Spironucleus barkhanus glucosamine-6-phosphate isomerase (nagB2) gene, complete cds.-
68-1126772677 1.000- 0.000Spironucleus barkhanus alcohol dehydrogenase E (adhE) mRNA, partial cds.-
69-1112241224 1.000- 0.000Spironucleus barkhanus alcohol dehydrogenase (adh) mRNA, partial cds.-
70-1121592159 1.000- 0.000Spironucleus barkhanus acetyl-CoA synthetase (accS) mRNA, partial cds.-
71-1118971897 1.000- 0.000Spironucleus barkhanus hybrid-cluster protein (priS) gene, partial cds.-
72-1112411241 1.000- 0.000Spironucleus barkhanus A-type flavoprotein (fprA) mRNA, partial cds.-
73-11707707 1.000- 0.000Spironucleus barkhanus translation elongation factor 1 beta (EF-1 beta) mRNA, partial cds.-
74-11982982 1.000- 0.000Spironucleus barkhanus coatomer-like protein beta subunit (B-COP) gene, partial cds.-
75-11653653 1.000- 0.000Spironucleus barkhanus vacuolar protein sorting 26-like (Vps26) gene, partial cds.-
76-11604604 1.000- 0.000Spironucleus barkhanus thioredoxin peroxidase mRNA, partial cds.-
77-12411688 0.799- 0.000Spironucleus barkhanus ribosomal protein L7A mRNA, partial cds.-
78-114564650 0.877- 0.000Spironucleus barkhanus glutamate dehydrogenase 1 (gdh1) gene, partial cds.-
79-1125292529 1.000- 0.000Spironucleus barkhanus translation elongation factor 2 (EF-2) mRNA, partial cds.-
80-111444014440 1.000- 0.000Spironucleus barkhanus isolate Sp1 ATP-binding cassette subfamily C (CFTR/MRP) member 1, ATP-binding cassette subfamily C (CFTR/MRP) member 5, hypothetical proteins, and calmodulin genes, complete cds; and hypothetical protein gene, partial cds.-
81-111255012550 1.000- 0.000Spironucleus barkhanus isolate Sp2 hypothetical protein genes, partial cds.-
82-111412914129 1.000- 0.000Spironucleus barkhanus isolate Sp3 hypothetical protein gene, partial cds; dynamin-like protein, hypothetical proteins, and UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase genes, complete cds; and hypothetical protein gene, partial cds.-
83-1148924892 1.000- 0.000Spironucleus barkhanus isolate Sp4 genomic sequence.-
84-1118561856 1.000- 0.000Spironucleus barkhanus isolate Sp5 uridine kinase gene, partial cds.-
85-1123652365 1.000- 0.000Spironucleus barkhanus isolate Sp6 5'-nucleotidase gene, complete cds.-
86-1141634163 1.000- 0.000Spironucleus barkhanus isolate Sp7 hypothetical protein gene, partial cds; UDP-glucose 4-epimerase gene, complete cds; and histone-lysine N-methyltransferase gene, partial cds.-
87-1154895489 1.000- 0.000Spironucleus barkhanus isolate Sp8 hypothetical protein gene, partial cds; phosphopantothenoylcysteine decarboxylase gene, complete cds; and hypothetical protein gene, partial cds.-
88-1190059005 1.000- 0.000Spironucleus salmonicida strain ATCC 50380 18S ribosomal RNA gene, complete sequence; and 28S ribosomal RNA gene, partial sequence.-
89-1134183418 1.000- 0.000Spironucleus barkhanus isolate Sp10 hypothetical protein genes, complete cds.-
90-1181978197 1.000- 0.000Spironucleus barkhanus isolate Sp11 hypothetical protein genes, partial cds.-
91-228911021 0.936- 0.000Giardia intestinalis alpha-3 giardin gene, complete cds.-
92-11525525 1.000- 0.000Giardia lamblia ATCC 50803 FKBP gene, complete cds.-
93-1188698869 1.000- 0.000Giardia lamblia ATCC 50803 phosphatidylinositol kinase-related kinase gene, complete cds.-
94-22215246 0.937- 0.000Giardia sp. SM-2004 ribonuclease P RNA subunit gene, partial sequence.-
95-15564564 1.000- 0.000Spironucleus salmonicida from Salvelinus alpinus glutamate dehydrogenase 1 (gdh1) gene, partial cds.-
96-1214051405 1.000- 0.000Spironucleus salmonis small subunit ribosomal RNA gene, partial sequence.-
97-2620312050 0.994- 0.000Retortamonas sp. ATCC 50375 small subunit ribosomal RNA gene, complete sequence.-
98-1117631763 1.000- 0.000Carpediemonas membranifera small subunit ribosomal RNA gene, complete sequence.-
99-1213871387 1.000- 0.000Carpediemonas membranifera clone 1 heat shock protein 70 (hsp70) gene, partial cds.-
100-12721851 0.924- 0.000Carpediemonas membranifera carbamate kinase (CK) gene, partial cds.-
101-11356356 1.000- 0.000Carpediemonas membranifera clone 1 carbamate kinase (CK) mRNA, partial cds.-
102-1117561756 1.000- 0.000Carpediemonas membranifera cytosolic heat shock protein 90 (HSP90) gene, partial cds.-
103-1117041704 1.000- 0.000Dysnectes brevis gene for 18S rRNA, complete sequence.-
104-1114471447 1.000- 0.000Chilomastix wenrichi isolate CAVIA2 small subunit ribosomal RNA gene, complete sequence.-
105-1111461146 1.000- 0.000Enteromonadidae sp. PSEUD alpha-tubulin gene, partial cds.-
106-1118481848 1.000- 0.000Retortamonas sp. Vale Fe-hydrogenase mRNA, complete cds.-
107-1120822082 1.000- 0.000Retortamonas sp. Vale Fe-hydrogenase mRNA, complete cds.-
108-1143864386 1.000- 0.000Retortamonas sp. Vale pyruvate:ferredoxin oxidoreductase mRNA, complete cds.-
109-1118091809 1.000- 0.000Retortamonas sp. VALE heat shock protein 90 (HSP90) gene, partial cds.-
110-1423442461 0.987- 0.000Chilomastix mesnili clone 1_1 small subunit ribosomal RNA gene, complete sequence.-
111-1116831683 1.000- 0.000Hicanonectes teleskopos 18S small subunit ribosomal RNA gene, partial sequence.-

  1 Maximum Alignment Density
  2 "Q" alignment comparison score between default Clustal W and Muscle alignments
  3 Level of resolution (consensus fork index) of the strict consensus tree built from the two bootstrap trees from Clustal W and Muscle alignments.
  4 Trees are unrooted majority rule consensus trees from 'fast bootstrap parsimony' algorithm in PAUP* 4.0 using default ClustalW alignments. Expect performance to deteriorate with low MAD or Q scores, large number of taxa, and high sequence divergence (largely owing to alignment problems). Only trees for (taxon) phylogenetically informative clusters with fewer than 1000 sequences are generated.


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