Cluster set at subtree whose root is 'Fornicata'

Click here to see taxon by cluster Data Availability Matrix
Cluster IDParent clusterTaxIDsGIsLminLmaxMAD1Q2Tcfi3Defline of longest sequenceTree4
6-8176231204 0.659- 0.000Spironucleus vortens elongation factor-1 alpha gene, partial cds.
18-61813982354 0.636- 0.000Octomitus intestinalis small subunit ribosomal RNA gene, partial sequence.
20-171812081630 0.901- 0.000Trepomonas agilis 18S ribosomal RNA gene.
21-10349931878 0.603- 0.000Spironucleus vortens alpha-tubulin gene, complete cds.
31-4511411359 0.907- 0.000Diplomonad ATCC50330 beta tubulin gene, partial cds.
32-6716572278 0.786- 0.000Spironucleus barkhanus cytosolic heat shock protein 90 (HSP90) mRNA, complete cds.
43-444269513 0.624- 0.000Giardia psittaci small subunit ribosomal RNA gene, partial sequence.
47-11848001446 0.719- 0.000Diplomonad ATCC50330 small subunit rRNA gene, copy 2, partial sequence.

  1 Maximum Alignment Density
  2 "Q" alignment comparison score between default Clustal W and Muscle alignments
  3 Level of resolution (consensus fork index) of the strict consensus tree built from the two bootstrap trees from Clustal W and Muscle alignments.
  4 Trees are unrooted majority rule consensus trees from 'fast bootstrap parsimony' algorithm in PAUP* 4.0 using default ClustalW alignments. Expect performance to deteriorate with low MAD or Q scores, large number of taxa, and high sequence divergence (largely owing to alignment problems). Only trees for (taxon) phylogenetically informative clusters with fewer than 1000 sequences are generated.


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