Cluster set at subtree whose root is 'Glomeromycota'

Click here to see taxon by cluster Data Availability Matrix
Cluster IDParent clusterTaxIDsGIsLminLmaxMAD1Q2Tcfi3Defline of longest sequenceTree4
9-61415033476 0.504- 0.000Gigaspora gigantea RNA polymerase II largest subunit (RPB1) gene, partial cds.
15-13388021099 0.800- 0.000Glomus intraradices beta tubulin (BTub2) gene, partial cds.
16-15317152754 0.489- 0.000Glomus mosseae H(+)-ATPase (HA5) mRNA, complete cds.
19-72239541452385 0.293- 0.000Glomus mycorrhizal symbiont of Marchantia foliacea 18S rRNA gene (partial) and ITS1 (partial), Otira valley, clone 2.-
26-22374381517 0.497- 0.000Scutellospora heterogama isolate AFTOL-ID 138 elongation factor 1-alpha (EF1-alpha) gene, partial cds.
27-4528903584 0.921- 0.000Gigaspora gigantea RNA polymerase II second largest subunit (RPB2) gene, partial cds.
38-612617621 0.995- 0.000Gigaspora margarita strain JA201A isolate GimCHS4 chitin synthase (CHS) gene, partial cds.
39-58614622 0.993- 0.000Glomus mosseae chitin synthase (CHS) gene, partial cds.
47-9913451558 0.934- 0.000Glomus diaphanum partial atub gene for alpha-tubulin, exons 1-2.
68-418360360 1.000- 0.000Glomus geosporum isolate BEG18 Cu-Zn superoxide dismutase gene, partial cds.
79-45588611022 0.914- 0.000Diversispora spurca isolate AZ420B beta-tubulin (btub) gene, exons 1 through 4 and partial cds.
85-1622621621 1.000- 0.000Glomus claroideum strain DAOM 235359 clone 2 F-ATPase beta subunit (atp2) gene, partial cds; mitochondrial.
88-510081164 0.899- 0.000Glomus claroideum isolate MT109-2 beta-tubulin gene, partial cds.
90-587163580 0.504- 0.000Glomus etunicatum marker A2 genomic sequence.
91-497227553 0.609- 0.000Glomus etunicatum marker A3 genomic sequence.
93-496225540 0.576- 0.000Glomus etunicatum marker A9 genomic sequence.
97-495324565 0.723- 0.000Glomus etunicatum marker 4j genomic sequence.
100-5113222278 0.930- 0.000Glomus luteum clone SAL1 anonymous marker 5F genomic sequence.
138-77273275 0.999- 0.000Glomus claroideum partial mRNA for Ste12-like transcription factor (ste12 gene), isolate BEG31.
139-7797128 0.931- 0.000Glomus claroideum partial mRNA for Ste12-like transcription factor (ste12 gene), isolate BEG31.
146-49925977 0.959- 0.000Glomus caledonium partial act gene for actin, exons 1-4, isolate UY1326.1.3_spore3.
152-67657674 0.981- 0.000Glomus sp. HM-CL5 partial LSU gene for large ribosomal subunit.
156-6363356540 0.934- 0.000Glomus sp. 2505.08.Otto internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence.
171-5224401140 0.526- 0.000Paraglomus laccatum 18S rRNA gene (partial), ITS1, 5.8S rRNA gene, ITS2, 28S rRNA gene (partial).
174-9156711106 0.758- 0.000Ambispora fennica region encoding 18S rRNA gene (partial), 5.8S rRNA gene, 28S rRNA gene (partial), ITS1 and ITS2, clones pFD120-6 and pFD120-9.
176-618456582 0.948- 0.000Acaulospora sp. 1v5.4/1 partial 18S rRNA gene, ITS1, 5.8S rRNA gene, ITS2 and partial 28S rRNA gene, clone 1v5.4-1.
179-522451557 0.940- 0.000Acaulospora morrowiae 18S rRNA gene (partial), 5.8S rRNA gene, ITS1 and ITS2, clone YL1 YNP Spore AHQ-06.
183-11134234510 0.869- 0.000Scutellospora pellucida JJ58 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
192-5248889 0.995- 0.000Gigaspora margarita 18S ribosomal RNA gene, partial sequence.

  1 Maximum Alignment Density
  2 "Q" alignment comparison score between default Clustal W and Muscle alignments
  3 Level of resolution (consensus fork index) of the strict consensus tree built from the two bootstrap trees from Clustal W and Muscle alignments.
  4 Trees are unrooted majority rule consensus trees from 'fast bootstrap parsimony' algorithm in PAUP* 4.0 using default ClustalW alignments. Expect performance to deteriorate with low MAD or Q scores, large number of taxa, and high sequence divergence (largely owing to alignment problems). Only trees for (taxon) phylogenetically informative clusters with fewer than 1000 sequences are generated.


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