Cluster set at subtree whose root is 'magnoliids'

Click here to see taxon by cluster Data Availability Matrix
Cluster IDParent clusterTaxIDsGIsLminLmaxMAD1Q2Tcfi3Defline of longest sequenceTree4
1-90119264782 0.545- 0.000Cinnamomum camphora chloroplast rpl2, trnH, psbA genes, partial cds and complete sequence.
2-149228398896 0.845- 0.000M.liliflora chloroplast rbcL gene for ribulose-1,5-biphosphate-carboxylase and promoter region.
3-1212850985 0.975- 0.000Manglietia insignis trnL, trnL-trnF intergenic spacer, partial sequence; chloroplast.
4-4047631841 0.938- 0.000Drimys winteri voucher RBGE 19670643 ribosomal protein S16 (rps16) gene, intron; chloroplast.
6-3574045742200 0.881- 0.000Magnolia sieboldii NADH dehydrogenase subunit F (ndhF) gene, partial cds; chloroplast gene for chloroplast product.
8-44575608 0.959- 0.000Magnolia liliiflora internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence.
9-831006571300 0.882- 0.000Magnolia fraseri var. fraseri voucher Qiu 91010 GAI-like protein 1 (GAI1) gene, partial cds.
10-82100411843 0.733- 0.000Magnolia coco voucher Ahmad Rizal Khalit s.n. Leafy gene, partial sequence.
11-1271706881734 0.525- 0.000Houttuynia cordata phytochrome A (PHYA) gene, partial cds.
12-4646415431 0.982- 0.000Magnolia acuminata ORF350 gene, partial sequence; chloroplast gene for chloroplast product.
13-7899963631494 0.841- 0.000Persea americana ribulosebiphosphate carboxylase (rbcL) gene, chloroplast gene encoding chloroplast protein, complete cds.
14-116220501942352 0.287- 0.000Houttuynia cordata trnT-trnL intergenic spacer, trnL gene and trnL-trnF intergenic spacer sequence.-
15-446521175 0.882- 0.000Magnolia tripetala psbM-trnD intergenic spacer, partial sequence; chloroplast.
16-4159541052 0.932- 0.000Magnolia tripetala trnC-ycf6 intergenic spacer, partial sequence; chloroplast.
19-49678762 0.921- 0.000Magnolia acuminata ycf6-psbM intergenic spacer, partial sequence; chloroplast.
21-2525394700 0.936- 0.000Eupomatia bennettii trnK gene, intron; chloroplast gene for chloroplast product.
23-4511721231 0.973- 0.000Magnolia acuminata trnC-rpoB intergenic spacer, partial sequence; chloroplast.
24-491377031367 0.883- 0.000Canella winterana trnD-trnT intergenic spacer, partial sequence; chloroplast.
27-981256101810 0.889- 0.000Houttuynia cordata 18S ribosomal RNA gene, complete sequence.
36-4510711178 0.962- 0.000Magnolia acuminata petA-psbJ intergenic spacer, partial sequence; chloroplast.
41-2252189341 0.916- 0.000Virola sebifera isolate 779 acetyl-CoA carboxylase carboxyltransferase beta subunit (accD) gene, partial cds; chloroplast.
42-1213317384 0.920- 0.000Magnolia grandiflora voucher NMNH 06-8358 NADH dehydrogenase subunit J (ndhJ) gene, partial cds; chloroplast.
43-91163195552 0.858- 0.000Actinodaphne pruinosa voucher K8203 (ANDES) RNA polymerase beta chain (rpoB) gene, partial cds.
44-109205328761 0.697- 0.000Mollinedia pinchotiana voucher LDV3175 RNA polymerase beta subunit (rpoC1) gene, partial cds; chloroplast.
45-2233185285 0.845- 0.000Xylopia nitida voucher NH200253 Ycf5 gene, partial cds; chloroplast.
46-657711001284 0.972- 0.000Pseudowintera axillaris ATP synthase alpha subunit (atp1) gene, partial cds; mitochondrial.
47-3264323935 0.760- 0.000Lindera erythrocarpa APETALA3-like protein AP3-1 mRNA, partial cds.
49-55624982 0.856- 0.000Eupomatia bennettii AP1-like protein (AP1) mRNA, partial cds.
50-1720420880 0.724- 0.000Lindera erythrocarpa PISTILLATA-like protein PI-1 mRNA, partial cds.
52-57619971 0.822- 0.000Persea americana AGL9.1 mRNA, complete cds.
53-484541081 0.678- 0.000Persea americana AG.2 mRNA, partial cds.
54-58618948 0.771- 0.000Chimonanthus praecox AGL6-like protein mRNA, complete cds.
58-24267471122 0.912- 0.000Piper betle apocytochrome b (cob) gene, partial cds; mitochondrial.
59-1313171201 0.953- 0.000Drimys aromatica 28S ribosomal RNA (28S rRNA), ca. bp 738 to 938 in mature rRNA.
60-1313130200 0.872- 0.000Drimys winteri 28S ribosomal RNA (28S rRNA), ca. bp 1602 to 1803 in mature rRNA.
61-11119096 0.985- 0.000Drimys aromatica 28S ribosomal RNA (28S rRNA), ca. bp 2056 to 2151 in mature rRNA.
62-131399134 0.969- 0.000Asimina triloba 18S ribosomal RNA (18S rRNA), ca. bp 91 to 223 in mature rRNA.
63-12124856 0.972- 0.000Saruma henryi 18S ribosomal RNA (18S rRNA) bp 234 to 289 in mature rRNA.
64-1313185250 0.934- 0.000Calycanthus occidentalis 18S ribosomal RNA (18S rRNA), ca. bp 294 to 543 in mature rRNA.
65-1313187215 0.977- 0.000Hedycarya sp. 18S ribosomal RNA gene, partial sequence.
66-1313176212 0.984- 0.000Saururus cernuus 18S ribosomal RNA (18S rRNA) bp 1203 to 1414 in mature rRNA.
67-1313140188 0.929- 0.000Saururus cernuus 18S ribosomal RNA (18S rRNA) bp 1502 to 1688 in mature rRNA.
68-12123639 0.989- 0.000Aristolochia gigantea 18S ribosomal RNA (18S rRNA), ca. bp 1716 to 1757 in mature rRNA.
73-32357052382 0.655- 0.000Cassytha filiformis cytochrome oxidase subunit I (coxI) gene, partial cds; mitochondrial.
74-424316012245 0.852- 0.000Hedycarya arborea small subunit ribosomal RNA gene, partial sequence; mitochondrial.
75-99323415 0.930- 0.000Peperomia argyreia mitochondrial protein (rps2) gene, partial cds; mitochondrial gene for mitochondrial product.
76-8821452179 0.991- 0.000Persea americana chloroplast partial mRNA for photosystem1 subunit A (psaA gene).
77-202213392218 0.847- 0.000Houttuynia cordata photosystem II cp47 protein (psbB) gene, partial cds; photosystem II subunit T (psbT) and photosystem II subunit N (psbN) genes, complete cds; and photosystem II subunit H (psbH) gene, partial cds; chloroplast.
78-66105105 1.000- 0.000Piper nigrum chloroplast petL gene for cytochrome b6-f subunit VI.
82-1617553674 0.907- 0.000Myristica globosa voucher WP2B0412 atpF-atpH intergenic spacer, partial sequence; chloroplast.
83-1718318441 0.895- 0.000Litsea collina voucher WP1B0051 psbK-psbI intergenic spacer, partial sequence; chloroplast.
86-56328429 0.851- 0.000M.soulangeana mitochondrial mRNA for ribosomal protein S13.
87-27295611188 0.931- 0.000Hedycarya angustifolia phytochrome C (PHYC) gene, partial cds.
88-9914091508 0.969- 0.000Cinnamomum camphora small subunit ribosomal RNA gene, partial sequence; chloroplast.
90-559361059 0.925- 0.000Magnolia x soulangeana ribosomal protein S4 (rps4) gene, complete cds; mitochondrial gene for mitochondrial product.
91-5530273030 1.000- 0.000Drimys winteri RNA polymerase II largest subunit (rpb1) mRNA, partial cds.
93-5354406972 0.917- 0.000Glossocalyx longicuspis rpl16 gene, chloroplast gene encoding chloroplast protein, intron sequence.
94-3740136333 0.625- 0.000Illigera rhodantha voucher Y. Hua-Gu 115-15 (MO) PsbA gene, partial cds; and psbA-trnH intergenic spacer, partial sequence; chloroplast.
95-712382619 0.882- 0.000Magnolia salicifolia chloroplast rps16 gene, partial sequence, isolate: A3TAMU2942.
96-69214245 0.932- 0.000Lindera triloba chloroplast rpl16 gene, partial sequence, isolate: ASIRO400.
104-88550719 0.868- 0.000Michelia odora 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
105-5516621695 0.989- 0.000Asarum caudatum RNA polymerase II second largest subunit (RPB2) mRNA, partial cds.
113-393914913734 0.863- 0.000Drimys winteri large subunit ribosomal RNA gene, partial sequence; mitochondrial.
114-393910171161 0.965- 0.000Calycanthus floridus NADH dehydrogenase subunit 5 (nad5) gene, partial cds; mitochondrial.
115-393921362584 0.925- 0.000Calycanthus floridus RNA polymerase beta chain (rpoC2) gene, partial cds; chloroplast.
116-8824812676 0.983- 0.000Tasmannia insipida large subunit ribosomal RNA gene, partial sequence; chloroplast.
118-616312131857 0.956- 0.000Lactoris fernandeziana maturase (matR) gene, partial cds; mitochondrial gene for mitochondrial product.
119-759511401504 0.957- 0.000Myristica fragrans ATP synthase beta subunit-like gene sequence.
120-79482748 0.704- 0.000Degeneria vitiensis internal transcribed spacer 2, partial sequence; 4.5S ribosomal RNA gene, internal transcribed spacer 3, and 5S ribosomal RNA gene, complete sequence; and internal transcribed spacer 4, partial sequence; chloroplast.
152-1414650718 0.965- 0.000Hernandia peltata cytochrome b-559 alpha subunit (psbE) gene, partial cds; cytochrome b-559 beta subunit (psbF) gene, complete cds; psbL gene, complete sequence; and photosystem II subunit J (psbJ) gene, partial cds; chloroplast.
153-7712591294 0.981- 0.000Lactoris fernandeziana ribosomal protein L2 (rpl2) gene, partial cds; chloroplast gene for chloroplast product.
154-5759454826 0.920- 0.000Peperomia galioides voucher BG002 small ribosomal protein 4 (rps4) gene, partial cds; and rps4-trnS intergenic spacer, partial sequence; chloroplast.
155-1010180180 1.000- 0.000Cinnamomum zeylanicum arginine decarboxylase gene, partial cds.
156-141437123774 0.993- 0.000Drimys winteri ribosomal protein S12 (rps12) gene, partial cds; ribosomal protein S7 (rps7) gene, complete cds; and NADH dehydrogenase subunit B (ndhB) gene, chloroplast genes encoding chloroplast proteins, partial cds.
157-141421612184 0.998- 0.000Hernandia peltata photosystem II D2 protein (psbD) and photosystem II cp43 protein (psbC) genes, partial cds; chloroplast.
166-939520373378 0.791- 0.000Drimys winteri large subunit 26S ribosomal RNA gene, partial sequence.
178-2323912979 0.955- 0.000Annona muricata petB-petD intergenic spacer, partial sequence; and PetD (petD) gene, intron and partial cds; chloroplast.
187-121210471494 0.753- 0.000Zygogynum pauciflorum chloroplast rpl2, trnH, rpl22, rps3 genes, partial and complete cds and complete sequence.
204-4415521673 0.960- 0.000Asarum caudigerum 18S ribosomal RNA gene, partial sequence.
207-112112417865 0.921- 0.000Pseuduvaria nova-guineensis ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit (rbcL) gene, partial cds; rbcL-atpB intergenic spacer, complete sequence; and AtpB (atpB) gene, partial cds; chloroplast.
217-77175271 0.872- 0.000Anaxagorea acuminata trnK gene, intron sequence; chloroplast gene for chloroplast product.
219-528620181567 0.759- 0.000Liriodendron chinense psbA-trnH intergenic spacer, partial sequence; chloroplast.
220-99103179897 0.805- 0.000Meiocarpidium lepidotum trnS-trnG intergenic spacer, partial sequence; chloroplast.
221-2222102210 0.772- 0.000Annona hypoglauca microsatellite LMCH9 sequence.
222-2222137264 0.827- 0.000Annona bicolor microsatellite LMCH10 sequence.
226-3030209572 0.641- 0.000Magnolia tripetala psbA-trnK intergenic spacer and tRNA-Lys (trnK) gene, partial sequence; chloroplast.
227-44396396 1.000- 0.000Polyalthia suberosa small subunit ribosomal protein (rps11) gene, partial cds; mitochondrial gene for mitochondrial product.
241-1616662869 0.922- 0.000Rauwenhoffia siamensis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; 26S ribosomal RNA gene, partial sequence.
243-913373699 0.669- 0.000Fissistigma oldhamii chloroplast rpl2, trnH, psbA genes, partial cds and complete sequence.
244-2122602723 0.879- 0.000Goniothalamus malayanus voucher Yuyen 209 trnG gene, intron; chloroplast.
246-1616755836 0.936- 0.000Goniothalamus tapis trnT-trnL intergenic spacer, partial sequence; chloroplast.
247-1117564672 0.942- 0.000Guatteria cf. amplifolia Maas et al. 9419 isolate 627 chloroplast glutamine synthatase gene, intron 7 and partial cds; nuclear gene for chloroplast product.
252-1313166277 0.712- 0.000Myristica maingayi trnK gene, intron sequence; chloroplast gene for chloroplast product.
254-1040335343 0.999- 0.000Compsoneura capitellata isolate 889 23S large subunit ribosomal RNA gene, partial sequence; chloroplast.
258-910294412 0.800- 0.000Iryanthera sagotiana voucher NH200282 psbA-trnH intergenic spacer, partial sequence; chloroplast.
279-1183432715 0.872- 0.000Chimonanthus salicifolius voucher Zhou 2000621A 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer, complete sequence; and 26S ribosomal RNA gene, partial sequence.
280-101018112152 0.883- 0.000Idiospermum australiense trnC, petN, psbM, and trnD genes, complete sequence; chloroplast.
281-55509644 0.948- 0.000Piper betle ATPase subunit 6 (atp6) gene, partial cds; mitochondrial.
282-45565604 0.969- 0.000Calycanthus floridus cytochrome c biogenesis ccmB (ccmB) gene, partial cds; mitochondrial.
285-55414560 0.936- 0.000Laurus nobilis cytochrome c biogenesis ccmF (ccmFN2) gene, partial cds; mitochondrial.
287-569241521 0.730- 0.000Calycanthus floridus NADH dehydrogenase subunit 1 (nad1) gene, exons 2, 3 and partial cds; mitochondrial.
290-56500548 0.969- 0.000Laurus nobilis NADH dehydrogenase subunit 6 (nad6) gene, partial cds; mitochondrial.
291-557641492 0.806- 0.000Calycanthus floridus NADH dehydrogenase subunit 7 (nad7) gene, exons 1 through 5 and partial cds; mitochondrial.
292-55492542 0.975- 0.000Piper betle NADH dehydrogenase subunit 9 (nad9) gene, partial cds; mitochondrial.
293-55372496 0.912- 0.000Piper betle ribosomal protein L16 (rpl16) pseudogene, partial sequence; mitochondrial.
294-55425468 0.964- 0.000Laurus nobilis ribosomal protein S1 (rps1) gene, partial cds; mitochondrial.
295-55174237 0.900- 0.000Piper betle ribosomal protein S19 (rps19) gene, partial cds; mitochondrial.
296-44350421 0.954- 0.000Calycanthus floridus ribosomal protein S7 (rps7) gene, partial cds; mitochondrial.
297-44359423 0.956- 0.000Calycanthus floridus succinate oxido-reductase subunit 4 (sdh4) gene, complete cds; mitochondrial.
300-44250315 0.946- 0.000Drimys winteri rps10 gene, partial sequence; mitochondrial gene for mitochondrial product.
331-315416325801 0.768- 0.000Nectandra salicifolia 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 26S ribosomal RNA gene, partial sequence.
366-116420344402 0.984- 0.000Litsea costalis DNA, external transcribed spacer, partial sequence, specimen_voucher: MAK: IZ 2041, clone: 8.
371-515190331 0.692- 0.000Cinnamomum osmophloeum internal transcribed spacer 2 and 26S ribosomal RNA gene, partial sequence.
372-9116609664 0.986- 0.000Nothaphoebe konishii partial chs gene, exons 1-2, clone ZD-27.
373-810287331 0.969- 0.000Persea kusanoi partial cpsHSP gene for chloroplast small heat shock protein, clone 2.
374-813285334 0.940- 0.000Persea kusanoi partial cpsHSP gene for chloroplast small heat shock protein, clone 1.
377-3636576970 0.688- 0.000Hortonia floribunda 26S ribosomal RNA gene, partial sequence.
386-3810012451423 0.901- 0.000Litsea fenestrata rpb2 gene for RNA polymerase II second largest subunit, partial cds, specimen_voucher: MAK:IZ 2031, clone: 3.
387-882861328 0.474- 0.000Persea americana actin mRNA, complete cds.
433-44181181 1.000- 0.000Asarum sp. Qiu 96018 ATP synthase F0 subunit 9 (atp9) gene, partial cds; mitochondrial.
434-44455732 0.899- 0.000Piper betle cytochrome oxidase subunit II (cox2) gene, intron and partial cds; mitochondrial.
435-44231304 0.900- 0.000Piper betle cytochrome oxidase subunit II (cox2) gene, exon 2 and partial cds; mitochondrial.
451-1217391476 0.888- 0.000Hazomalania voyronii voucher S.G. Razafimandimbison 590 (TAN) PsbA gene, partial cds; and psbA-trnH intergenic spacer, partial sequence; chloroplast.
463-55672795 0.931- 0.000Hedycarya aff. arborea DR3_7FR4 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
475-1352598616 0.975- 0.000Atherosperma moschatum haplotype 5 tRNA-Lys (trnK) gene, partial sequence; and maturase K (matK) gene, partial cds; chloroplast.
476-1453692779 0.915- 0.000Atherosperma moschatum haplotype 6 tRNA-Lys (trnK) and maturase K-like (matK) genes, partial sequence; chloroplast.
478-135299331 0.923- 0.000Tasmannia lanceolata isolate 173 PetN (petN) gene, partial cds; and petN-psbM intergenic spacer, partial sequence; chloroplast.
479-2020621808 0.789- 0.000Siparuna cristata voucher NH200160 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1 and 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence.
481-44523552 0.976- 0.000Siparuna pauciflora voucher STRI:BCI 123399 photosystem II protein D1 (psbA) gene, partial sequence; psbA-trnH intergenic spacer, complete sequence; and tRNA-His gene, partial sequence; chloroplast.
486-15106525825 0.686- 0.000Aristolochia manshuriensis isolate 1 PISTILLATA-like protein PI mRNA, partial cds.
489-1445851908 0.953- 0.000Aristolochia moupinensis chloroplast DNA, trnS - trnG intergenic spacer region, complete sequence, isolate: Mou2.
490-44786835 0.981- 0.000Aristolochia paucinervis isolate assem28.0.2 maturase K (matK) gene, partial cds; chloroplast.
493-55611690 0.973- 0.000Aristolochia shimadai ITS1 (partial), 5.8S rRNA gene and ITS2 (partial).
494-1132371382 0.995- 0.000Aristolochia manshuriensis PI gene for PISTILLATA, partial cds, isolate: SETS21, allele: 2.
495-1136457469 0.979- 0.000Aristolochia moupinensis AP3 gene for APETALA3, partial cds, isolate: Mou2, allele: 1.
515-553982 0.654- 0.000Peperomia sp. HZ 28S ribosomal RNA (28S rRNA) gene, partial sequence.
516-46101252258 0.983- 0.000Asarum asperum internal transcribed spacer 1, complete sequence.
517-46101219229 0.970- 0.000Asarum epigynum internal transcribed spacer 2, complete sequence.
518-1487638726 0.882- 0.000Asarum forbesii voucher PS0880MT01 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
538-88638648 0.995- 0.000Asarum yunnanense genes for ITS1, 5.8S rRNA, ITS2, partial and complete sequence, specimen_voucher: MAK:MAK257702.
539-1637207207 1.000- 0.000Asarum sieboldii var. cornutum chloroplast rps16 gene, intron, partial sequence, specimen_voucher: H. Yamaji 8170 (TUS).
540-1637291306 0.985- 0.000Asarum heterotropoides var. heterotropoides chloroplast DNA, psbC-trnS (UGA) intergenic spacer region, specimen_voucher: H. Yamaji 7105 (TUS).
548-1418515886 0.922- 0.000Peperomia urocarpa voucher C Davidson 10889 glyceraldehyde 3-phosphate dehydrogenase gene, partial sequence.
550-59959051224 0.902- 0.000Piper ornatum voucher AC005 rpl16 gene, partial sequence; chloroplast.
551-1010661681 0.986- 0.000Peperomia rhomboidea internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence.
572-212315434794 0.849- 0.000Macropiper latifolium 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
575-1416213324 0.791- 0.000Piper sp. Pi-B PsbA (psbA) gene, partial cds; psbA-trnH intergenic spacer, complete sequence; and tRNA-His (trnH) gene, partial sequence; chloroplast.
589-48666071048 0.869- 0.000Piper subpenninerve voucher W Wong 1 glyceraldehyde 3-phosphate dehydrogenase gene, partial sequence.
608-152180418829 0.951- 0.000Piper capense voucher CD 1004 psbJ-petA intergenic spacer, partial sequence.
620-6189551833 0.814- 0.000Houttuynia cordata 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 26S ribosomal RNA gene, partial sequence.
639-3153589701 0.943- 0.000Drimys winteri 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 26S ribosomal RNA gene, complete sequence.
641-10446771123 0.698- 0.000Tasmannia insipida isolate Tinsipida3 tRNA-Asp (trnD) gene and trnD-psbM intergenic spacer, partial sequence; chloroplast.
644-55224226 0.993- 0.000Drimys andina internal transcribed spacer 2, complete sequence.
645-55249252 0.996- 0.000Drimys winteri var. winteri internal transcribed spacer 1, complete sequence.
646-1622568741 0.871- 0.000Canella winterana internal transcribed spacer (ITS1 and ITS2); ribosomal RNA (18S, 5.8S, and 26S rRNA).

  1 Maximum Alignment Density
  2 "Q" alignment comparison score between default Clustal W and Muscle alignments
  3 Level of resolution (consensus fork index) of the strict consensus tree built from the two bootstrap trees from Clustal W and Muscle alignments.
  4 Trees are unrooted majority rule consensus trees from 'fast bootstrap parsimony' algorithm in PAUP* 4.0 using default ClustalW alignments. Expect performance to deteriorate with low MAD or Q scores, large number of taxa, and high sequence divergence (largely owing to alignment problems). Only trees for (taxon) phylogenetically informative clusters with fewer than 1000 sequences are generated.


Back to taxonomic hierarchy view