Cluster set at subtree whose root is 'basal Magnoliophyta'

Click here to see taxon by cluster Data Availability Matrix
Cluster IDParent clusterTaxIDsGIsLminLmaxMAD1Q2Tcfi3Defline of longest sequenceTree4
0-40427541033 0.837- 0.000Illicium angustisepalum rpl16 gene, intron sequence; chloroplast gene for chloroplast product.
1-64712901740 0.458- 0.000Chloranthus brachystachys trnT-trnL intergenic spacer, trnL gene and trnL-trnF intergenic spacer sequence.
2-3031849971 0.917- 0.000Amborella trichopoda petB-petD intergenic spacer, partial sequence; and PetD (petD) gene, intron and partial cds; chloroplast.
3-34610814 0.906- 0.000Illicium henryi PISTILLATA-like protein PI-2 mRNA, partial cds.-
4-55585854 0.816- 0.000Illicium henryi APETALA3-like protein AP3-1 mRNA, partial cds.
5-37603949 0.790- 0.000Illicium henryi APETALA3-like protein AP3-3A mRNA, partial cds.-
6-11652652 1.000- 0.000Illicium floridanum AG (AG) mRNA, partial cds.-
7-181920293329 0.912- 0.000Chloranthus japonicus 26S ribosomal RNA gene, complete sequence.
8-161615652280 0.830- 0.000Chloranthus multistachys small subunit ribosomal RNA gene, partial sequence; mitochondrial.
9-131328913968 0.844- 0.000Austrobaileya scandens large subunit ribosomal RNA gene, partial sequence; mitochondrial.
10-485311741484 0.918- 0.000Victoria amazonica ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit (rbcL) gene, complete cds; chloroplast.
11-661065442981 0.634- 0.000Amborella trichopoda tRNA-Lys (trnK) gene, partial sequence; maturase K (matK) gene, complete cds; and trnK-psbA intergenic spacer, partial sequence; chloroplast.
12-141510621338 0.849- 0.000Amborella trichopoda NADH dehydrogenase subunit 5 (nad5) gene, partial cds; mitochondrial.
13-151522654170 0.613- 0.000Nuphar advena RNA polymerase beta'' chain (rpoC2) gene, partial cds; chloroplast.
14-8825962639 0.993- 0.000Nymphaea sp. Qiu 91029 large subunit ribosomal RNA gene, partial sequence; chloroplast.
15-9913161475 0.981- 0.000Austrobaileya scandens small subunit ribosomal RNA gene, partial sequence; chloroplast.
16-2324208462 0.685- 0.000Hedyosmum mexicanum plastid trnL-trnF intergenic spacer and partial tRNA-Phe gene, specimen voucher Salazar s.n. (MEXU).
17-2121551598 0.984- 0.000Illicium parviflorum trnG-trnS intergenic spacer, partial sequence; chloroplast.
18-4462429680 0.949- 0.000Kadsura coccinea internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence.
19-88162201 0.941- 0.000Euryale ferox 28S ribosomal RNA (28S rRNA), ca. bp 738 to 938 in mature rRNA.
20-88158193 0.931- 0.000Euryale ferox 28S ribosomal RNA (28S rRNA), ca. bp 1611 to 1803 in mature rRNA.
21-448896 0.974- 0.000Barclaya longifolia 28S ribosomal RNA (28S rRNA), ca. bp 2056 to 2151 in mature rRNA.
22-8883133 0.850- 0.000Brasenia schreberi 18S ribosomal RNA (18S rRNA), ca. bp 91 to 223 in mature rRNA.
23-775556 0.997- 0.000Nuphar lutea 18S ribosomal RNA gene, partial sequence.
24-88186249 0.927- 0.000Barclaya longifolia 18S ribosomal RNA (18S rRNA), ca. bp 294 to 543 in mature rRNA.
25-88143215 0.897- 0.000Barclaya longifolia 18S ribosomal RNA (18S rRNA), ca. bp 911 to 1126 in mature rRNA.
26-88132211 0.836- 0.000Chloranthus spicatus 18S ribosomal RNA (18S rRNA), ca. bp 1203 to 1414 in mature rRNA.
27-88106168 0.832- 0.000Barclaya longifolia 18S ribosomal RNA (18S rRNA), ca. bp 1522 to 1688 in mature rRNA.
28-773539 0.978- 0.000Nuphar lutea 18S ribosomal RNA gene, partial sequence.
29-232810321270 0.961- 0.000Sarcandra chloranthoides ATPase alpha subunit (atp1) gene, partial cds; mitochondrial gene for mitochondrial product.
30-353616431837 0.967- 0.000Austrobaileya scandens maturase (matR) gene, partial cds; mitochondrial gene for mitochondrial product.
31-233915421809 0.959- 0.000Hedyosmum arborescens 18S ribosomal RNA gene, complete sequence.
32-23298291497 0.950- 0.000Sarcandra grandiflora chloroplast atpB gene.
33-111120354329 0.845- 0.000Trithuria filamentosa ribosomal protein S12 (rps12) gene, partial cds; and ribosomal protein S7 (rps7) and NADH dehydrogenase subunit B (ndhB) genes, complete cds; chloroplast.
34-111112201283 0.985- 0.000Trimenia moorei ribosomal protein L2 (rpl2) gene, partial cds; chloroplast gene for chloroplast product.
35-131510142086 0.691- 0.000Trithuria submersa NADH dehydrogenase subunit F (ndhF) gene, partial cds; chloroplast.
36-121310592222 0.893- 0.000Trimenia moorei photosystem II D2 protein (psbD) and photosystem II CP43 protein (psbC) genes, partial cds; chloroplast genes for chloroplast products.
37-1111627720 0.969- 0.000Schisandra chinensis cytochrome b-559 alpha subunit (psbE) gene, partial cds; cytochrome b-559 beta subunit (psbF) and PsbF (psbL) genes, complete cds; and PsbJ (psbJ) gene, partial cds; chloroplast genes for chloroplast products.
38-151713342398 0.794- 0.000Austrobaileya scandens photosystem II CP47 protein (psbB) gene, partial cds; PsbT (psbT) and PsbN (psbN) genes, complete cds; and PsbH (psbH) gene, partial cds; chloroplast genes for chloroplast products.
39-33180180 1.000- 0.000Cabomba caroliniana arginine decarboxylase gene, partial cds.-
40-33234243 0.975- 0.000Illicium parviflorum translation initiation factor IF1 (infA) gene, complete cds; chloroplast gene for chloroplast product.-
41-3330393039 1.000- 0.000Amborella trichopoda RNA polymerase II largest subunit (RPB1) mRNA, partial cds.-
42-11270270 1.000- 0.000Schisandra sphenanthera clone SS4 microsatellite sequence.-
43-11318318 1.000- 0.000Schisandra sphenanthera clone SS9 microsatellite sequence.-
44-11640640 1.000- 0.000Schisandra sphenanthera clone SS16 microsatellite sequence.-
45-11411411 1.000- 0.000Schisandra sphenanthera clone SS18 microsatellite sequence.-
46-11362362 1.000- 0.000Schisandra sphenanthera clone SS21 microsatellite sequence.-
47-11319319 1.000- 0.000Schisandra sphenanthera clone SS24 microsatellite sequence.-
48-11536536 1.000- 0.000Schisandra sphenanthera clone SS38 microsatellite sequence.-
49-11378378 1.000- 0.000Schisandra sphenanthera clone SS42 microsatellite sequence.-
50-11453453 1.000- 0.000Schisandra sphenanthera clone SS49 microsatellite sequence.-
51-1010329412 0.899- 0.000Nymphaea sp. Qiu91029 mitochondrial protein (rps2) gene, partial cds; mitochondrial gene for mitochondrial product.
52-16197021415 0.967- 0.000Schisandra henryi cytochrome oxidase subunit 1 (coxI) gene, partial cds; mitochondrial.
53-11241241 1.000- 0.000Schisandra chinensis clone C12 microsatellite sequence.-
54-11284284 1.000- 0.000Schisandra chinensis clone C14 microsatellite sequence.-
55-11309309 1.000- 0.000Schisandra chinensis clone AC16 microsatellite sequence.-
56-11193193 1.000- 0.000Schisandra chinensis clone WGA18 microsatellite sequence.-
57-11254254 1.000- 0.000Schisandra chinensis clone WAC21 microsatellite sequence.-
58-11264264 1.000- 0.000Schisandra chinensis clone G24 microsatellite sequence.-
59-11265265 1.000- 0.000Schisandra chinensis clone AC25 microsatellite sequence.-
60-11486486 1.000- 0.000Schisandra chinensis clone WGA27 microsatellite sequence.-
61-11248248 1.000- 0.000Schisandra chinensis clone G35 microsatellite sequence.-
62-11474474 1.000- 0.000Schisandra chinensis clone WGA36 microsatellite sequence.-
63-11212212 1.000- 0.000Schisandra chinensis clone G42 microsatellite sequence.-
64-11360360 1.000- 0.000Schisandra chinensis clone C44 microsatellite sequence.-
65-11341341 1.000- 0.000Schisandra chinensis clone WGA60 microsatellite sequence.-
66-1118781878 1.000- 0.000Kadsura japonica KjPI gene for PISTILLATA-like protein, partial cds.-
67-11600600 1.000- 0.000Kadsura japonica chloroplast rps16 gene, intron, partial sequence, isolate: 4KJ.-
68-11682682 1.000- 0.000Kadsura japonica chloroplast trnH, psbA genes, complete sequence and partial cds.-
69-999941080 0.951- 0.000Euryale ferox chloroplast rpl2, rps19, rpl22, rps3 genes, partial and complete cds.
70-77539883 0.692- 0.000Illicium verum isolate 528 small ribosomal protein 4 (rps4) gene, partial cds; chloroplast.
71-33349390 0.965- 0.000Cabomba sp. Qiu 97027 small subunit ribosomal protein (rps11) gene, partial cds; mitochondrial gene for mitochondrial product.-
72-23181181 1.000- 0.000Amborella trichopoda ATP synthase F0 subunit 9 (atp9) gene, partial cds; mitochondrial.-
73-11310310 1.000- 0.000Illicium henryi maturase (matK) gene, partial cds; chloroplast gene for chloroplast product.-
74-11816816 1.000- 0.000Illicium verum ribosomal protein S16 (rps16) gene, intron; chloroplast.-
75-11271271 1.000- 0.000Schisandra rubriflora voucher BONN:Borsch 3477 trnK gene, intron; chloroplast.-
76-11296296 1.000- 0.000Illicium anisatum IaAP3-1 mRNA for APETALA3-like protein, partial cds.-
77-5515501665 0.964- 0.000Nymphaea odorata RNA polymerase II second largest subunit (RPB2) mRNA, partial cds.
78-899621101 0.941- 0.000Amborella trichopoda apocytochrome b (cob) gene, partial cds; mitochondrial.
79-24385468 0.911- 0.000Schisandra bicolor voucher NMNH 06-8343 RNA polymerase B-like (rpoB2) gene, partial sequence; chloroplast.-
80-24449484 0.947- 0.000Schisandra bicolor voucher NMNH 06-8343 psbA-trnH intergenic spacer, partial sequence; chloroplast.-
81-11272272 1.000- 0.000Schisandra bicolor voucher NMNH 06-8343 acetyl-CoA carboxylase-D (accD) gene, partial cds; chloroplast.-
82-11383383 1.000- 0.000Schisandra bicolor voucher NMNH 06-8343 NADH dehydrogenase subunit J (ndhJ) gene, partial cds; chloroplast.-
83-11670670 1.000- 0.000Schisandra bicolor voucher NMNH 06-8343 atpF-atpH intergenic spacer, partial sequence; chloroplast.-
84-22415415 1.000- 0.000Schisandra lancifolia voucher USDA QLG 062B psbK-psbI intergenic spacer, partial sequence; chloroplast.-
85-34442553 0.918- 0.000Schisandra bicolor voucher NMNH 06-8343 ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit (rbcL) gene, partial cds; chloroplast.-
86-101010561396 0.862- 0.000Sarcandra glabra phytochrome C (PHYC) gene, partial cds.
87-11749749 1.000- 0.000Schisandra nigra female-specific SCAR marker.-
88-59429626 0.822- 0.000Nymphaea lotus isolate lot-w RNA polymerase C-like (rpoC1) gene, partial sequence; chloroplast.
89-11135135 1.000- 0.000Schisandra lancifolia voucher USDA QLG 062B atpF-atpH intergenic spacer, partial sequence; chloroplast.-
90-11683683 1.000- 0.000Schisandra arisanensis chloroplast rpl2, trnH, psbA genes, partial cds and complete sequence.-
91-581395201913 0.746- 0.000Nymphaea violacea isolate NY448 trnT-trnL intergenic spacer, partial sequence; tRNA-Leu gene, complete sequence; and trnL-trnF intergenic spacer, partial sequence; chloroplast.
92-66506811 0.891- 0.000Cabomba caroliniana internal transcribed spacer 2, partial sequence; 4.5S ribosomal RNA gene, internal transcribed spacer 3, and 5S ribosomal RNA gene, complete sequence; and internal transcribed spacer 4, partial sequence; chloroplast.
93-336482 0.927- 0.000Chloranthus spicatus 28S ribosomal RNA (28S rRNA), ca. bp 1922 to 2001 in mature rRNA.-
94-2021157355 0.678- 0.000Cabomba caroliniana tRNA-lys (trnK) gene, chloroplast gene for chloroplast RNA, partial intron sequence.
95-1819190333 0.860- 0.000Nuphar variegata tRNA-lys (trnK) gene, chloroplast gene for chloroplast RNA, partial intron sequence.
96-118282 1.000- 0.000Barclaya longifolia chloroplast tRNA-lys (trnK) gene, partial intron sequence.-
97-11690690 1.000- 0.000Barclaya longifolia ITS1 (partial), 5.8S rRNA gene and ITS2 (partial), isolate NY-376.-
98-815465981 0.724- 0.000Nymphaea sp. EMK-2003 APETALA3-like protein AP3 class II mRNA, partial cds.
99-89567905 0.734- 0.000Nymphaea sp. EMK-2003 PISTILLATA-like protein PI mRNA, partial cds.
100-22755769 0.991- 0.000Euryale ferox chloroplast rpl2, trnH, psbA genes, partial cds and complete sequence.-
101-1111561156 1.000- 0.000Euryale ferox non-symbiotic hemoglobin class 1 gene, partial cds.-
102-1112671267 1.000- 0.000Euryale ferox non-symbiotic hemoglobin class 2 gene, partial cds.-
103-14648728 0.925- 0.000Euryale ferox 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 26S ribosomal RNA gene, partial sequence.-
104-11313313 1.000- 0.000Euryale ferox microsatellite EF-E7-01 sequence.-
105-11404404 1.000- 0.000Euryale ferox microsatellite EF-E19-02 sequence.-
106-11504504 1.000- 0.000Euryale ferox microsatellite EF-E47-05 sequence.-
107-11326326 1.000- 0.000Euryale ferox microsatellite EF-E62-08 sequence.-
108-11320320 1.000- 0.000Euryale ferox microsatellite EF-E79-10 sequence.-
109-11810810 1.000- 0.000Euryale ferox microsatellite EF-E16-12 sequence.-
110-11516516 1.000- 0.000Euryale ferox microsatellite EF-E86-16 sequence.-
111-11569569 1.000- 0.000Euryale ferox microsatellite EF-E89-19 sequence.-
112-11509509 1.000- 0.000Euryale ferox microsatellite EF-E90-20 sequence.-
113-11566566 1.000- 0.000Euryale ferox microsatellite EF-E91-21 sequence.-
114-11547547 1.000- 0.000Euryale ferox microsatellite EF-E95-22 sequence.-
115-562104801018 0.669- 0.000Nuphar variegata isolate 2 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 26S ribosomal RNA gene, partial sequence.
116-22858873 0.991- 0.000Nuphar variegata isolate 2 atpB-rbcL intergenic spacer, partial sequence; chloroplast.-
117-1212148264 0.882- 0.000Nuphar japonica internal transcribed spacer 1, and 5.8S ribosomal RNA gene, 5' region, partial sequence.
118-1313244299 0.975- 0.000Nuphar orbiculata 5.8S ribosomal RNA gene, 3' region, and internal transcribed spacer 2, partial sequence.
119-1111271127 1.000- 0.000Nymphaea odorata RNA polymerase II largest subunit (RPB1) gene, partial cds.-
120-1121412141 1.000- 0.000Nymphaea odorata NymodLFY protein (NymodLFY) gene, complete cds.-
121-2211881245 0.977- 0.000Nymphaea odorata phytochrome A (PHYA) gene, exon 1 and partial cds.-
122-11435435 1.000- 0.000Austrobaileya scandens clone 21 microsatellite sequence.-
123-11450450 1.000- 0.000Austrobaileya scandens clone 35 microsatellite sequence.-
124-11421421 1.000- 0.000Austrobaileya scandens clone 56 microsatellite sequence.-
125-11687687 1.000- 0.000Austrobaileya scandens clone 61 microsatellite sequence.-
126-11412412 1.000- 0.000Austrobaileya scandens clone 64 microsatellite sequence.-
127-11711711 1.000- 0.000Austrobaileya scandens clone 65 microsatellite sequence.-
128-11384384 1.000- 0.000Austrobaileya scandens clone 67 microsatellite sequence.-
129-11253253 1.000- 0.000Austrobaileya scandens clone 76 microsatellite sequence.-
130-3314701518 0.979- 0.000Nuphar advena ATP synthase alpha chain (atpA) gene, partial cds; chloroplast.-
131-1120692069 1.000- 0.000Austrobaileya scandens class III HD-Zip protein HDZ31 gene, partial cds.-
132-12907911 0.998- 0.000Austrobaileya scandens class III HD-Zip protein HDZ32B gene, partial cds.-
133-11635635 1.000- 0.000Austrobaileya scandens internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence.-
134-5510351398 0.880- 0.000Hedyosmum sp. SM-2000 phytochrome A (PHYA) gene, partial cds.
135-11573573 1.000- 0.000Austrobaileya scandens NADH dehydrogenase subunit 1 (nad1) gene, exon 2; mitochondrial gene for mitochondrial product.-
136-345491535 0.685- 0.000Trimenia moorei NADH dehydrogenase subunit I (nad1) gene, exons b and c, intron 2, and partial cds; mitochondrial gene for mitochondrial product.-
137-6621532250 0.968- 0.000Nuphar advena photosystem I P700 apoprotein A1 (psaA) gene, partial cds; chloroplast.
138-2210191023 0.998- 0.000Nymphaea colorata NcINO mRNA for putative transcription factor, complete cds.-
139-11471471 1.000- 0.000Nymphaea alba NaGAPDH mRNA for Glyceraldehyde 3-phosphate dehydrogenase, partial cds.-
140-11792792 1.000- 0.000Nymphaea alba 5-enol-pyruvylshikimate-phosphate synthase (EPSPS) mRNA, partial cds.-
141-1113321332 1.000- 0.000N.alba mitochondria DNA coxII intron.-
142-11567567 1.000- 0.000N.alba gene for phytochrome.-
143-174813421442 0.953- 0.000Nymphaea violacea voucher HELLQ 07 PsbE (psbE) gene, partial cds; psbE-petL intergenic spacer, complete sequence; and PetL (petL) gene, partial cds; chloroplast.
144-1967505593 0.965- 0.000Nymphaea candida voucher 131-02 ribosomal protein L32 (rpl32) gene, partial cds; and rpl32-trnL intergenic spacer, partial sequence; chloroplast.
145-11134134 1.000- 0.000Nymphaea tuberosa small subunit ribosomal RNA gene, mitochondrial gene for mitochondrial RNA, complete sequence, partial sequence representing helix 6.-
146-11781781 1.000- 0.000N.pumila 28S rRNA gene (partial).-
147-23278283 0.989- 0.000Nymphaea caerulea internal transcribed spacer 1, complete sequence.-
148-23244257 0.983- 0.000Nymphaea caerulea internal transcribed spacer 2, complete sequence.-
149-11444444 1.000- 0.000N.caerula chloroplast ndhB mRNA.-
150-11821821 1.000- 0.000Nuphar japonica NjFIL mRNA for filamentous flower like protein, partial cds.-
151-11864864 1.000- 0.000Nuphar advena AGL2 mRNA, partial cds.-
152-11897897 1.000- 0.000Nuphar advena AP1 (AP1) mRNA, partial cds.-
153-239411073 0.929- 0.000Nymphaea sp. EMK-2003 AGAMOUS-like protein mRNA, complete cds.-
154-11186186 1.000- 0.000Nuphar advena photosystem II reaction center Z protein (psbZ) gene, partial cds; chloroplast.-
155-11588588 1.000- 0.000Nuphar advena ATP-depedent Clp protease proteolytic subunit (clpP) gene, partial cds; chloroplast.-
156-11690690 1.000- 0.000Nuphar advena chloroplast envelope membrane protein (cemA) gene, partial cds; chloroplast.-
157-11924924 1.000- 0.000Nuphar advena cytochrome c biogenesis protein (ccsA) gene, partial cds; chloroplast.-
158-11744744 1.000- 0.000Nuphar advena ATP synthase CF0 A chain (atpI) gene, partial cds; chloroplast.-
159-11243243 1.000- 0.000Nuphar advena ATP synthase CF0 C chain (atpH) gene, partial cds; chloroplast.-
160-11552552 1.000- 0.000Nuphar advena ATP synthase CF0 B chain (atpF) gene, partial cds; chloroplast.-
161-11402402 1.000- 0.000Nuphar advena ATP synthase CF1 epsilon chain (atpE) gene, partial cds; chloroplast.-
162-11156156 1.000- 0.000Nuphar advena ribosomal protein L32 (rpl32) gene, partial cds; chloroplast.-
163-11345345 1.000- 0.000Nuphar advena ribosomal protein L20 (rpl20) gene, partial cds; chloroplast.-
164-11819819 1.000- 0.000Nuphar advena ribosomal protein L2 (rpl2) gene, partial cds; chloroplast.-
165-11396396 1.000- 0.000Nuphar advena ribosomal protein L16 (rpl16) gene, partial cds; chloroplast.-
166-11366366 1.000- 0.000Nuphar advena ribosomal protein L14 (rpl14) gene, partial cds; chloroplast.-
167-1110081008 1.000- 0.000Nuphar advena RNA polymerase alpha chain (rpoA) gene, partial cds; chloroplast.-
168-11111111 1.000- 0.000Nuphar advena ribosomal protein L36 (rpl36) gene, partial cds; chloroplast.-
169-11204204 1.000- 0.000Nuphar advena ribosomal protein L33 (rpl33) gene, partial cds; chloroplast.-
170-11465465 1.000- 0.000Nuphar advena ribosomal protein S7 (rps7) gene, partial cds; chloroplast.-
171-11654654 1.000- 0.000Nuphar advena ribosomal protein S3 (rps3) gene, partial cds; chloroplast.-
172-11714714 1.000- 0.000Nuphar advena ribosomal protein S2 (rps2) gene, partial cds; chloroplast.-
173-11276276 1.000- 0.000Nuphar advena ribosomal protein S19 (rps19) gene, partial cds; chloroplast.-
174-11303303 1.000- 0.000Nuphar advena ribosomal protein S18 (rps18) gene, partial cds; chloroplast.-
175-11261261 1.000- 0.000Nuphar advena ribosomal protein S15 (rps15) gene, partial cds; chloroplast.-
176-11300300 1.000- 0.000Nuphar advena ribosomal protein S14 (rps14) gene, partial cds; chloroplast.-
177-11369369 1.000- 0.000Nuphar advena ribosomal protein S12 (rps12) gene, partial cds; chloroplast.-
178-11105105 1.000- 0.000Nuphar advena photosystem II protein T (psbT) gene, partial cds; chloroplast.-
179-11129129 1.000- 0.000Nuphar advena photosystem II protein N (psbN) gene, partial cds; chloroplast.-
180-11552552 1.000- 0.000Nuphar advena Ycf4 (ycf4) gene, partial cds; chloroplast.-
181-11378378 1.000- 0.000Nuphar advena Ycf3 gene, partial cds; chloroplast.-
182-11396396 1.000- 0.000Nuphar advena ribosomal protein S8 (rps8) gene, partial cds; chloroplast.-
183-11414414 1.000- 0.000Nuphar advena ribosomal protein S11 (rps11) gene, partial cds; chloroplast.-
184-1120582058 1.000- 0.000Nuphar advena RNA polymerase beta' chain (rpoC1) gene, partial cds; chloroplast.-
185-1132133213 1.000- 0.000Nuphar advena RNA polymerase beta chain (rpoB) gene, partial cds; chloroplast.-
186-11111111 1.000- 0.000Nuphar advena cytochrome b6/f complex subunit V (petG) gene, partial cds; chloroplast.-
187-11480480 1.000- 0.000Nuphar advena cytochrome b6/f complex subunit IV (petD) gene, partial cds; chloroplast.-
188-11639639 1.000- 0.000Nuphar advena cytochrome b6 (petB) gene, partial cds; chloroplast.-
189-11963963 1.000- 0.000Nuphar advena cytochrome f (petA) gene, partial cds; chloroplast.-
190-11102102 1.000- 0.000Nuphar advena photosystem II protein M (psbM) gene, partial cds; chloroplast.-
191-11114114 1.000- 0.000Nuphar advena photosystem II protein L (psbL) gene, partial cds; chloroplast.-
192-11183183 1.000- 0.000Nuphar advena photosystem II protein K (psbK) gene, partial cds; chloroplast.-
193-11120120 1.000- 0.000Nuphar advena photosystem II protein J (psbJ) gene, partial cds; chloroplast.-
194-11108108 1.000- 0.000Nuphar advena photosystem II protein I (psbI) gene, partial cds; chloroplast.-
195-11219219 1.000- 0.000Nuphar advena photosystem II phosphoprotein (psbH) gene, partial cds; chloroplast.-
196-11117117 1.000- 0.000Nuphar advena cytochrome b559 beta chain (psbF) gene, partial cds; chloroplast.-
197-11249249 1.000- 0.000Nuphar advena cytochrome b559 alpha chain (psbE) gene, partial cds; chloroplast.-
198-1110591059 1.000- 0.000Nuphar advena photosystem II protein D1 (psbA) gene, partial cds; chloroplast.-
199-11132132 1.000- 0.000Nuphar advena photosystem I subunit IX (psaJ) gene, partial cds; chloroplast.-
200-11108108 1.000- 0.000Nuphar advena photosystem I subunit VIII (psaI) gene, partial cds; chloroplast.-
201-11243243 1.000- 0.000Nuphar advena photosystem I subunit VII (psaC) gene, partial cds; chloroplast.-
202-1122022202 1.000- 0.000Nuphar advena photosystem I P700 apoprotein A2 (psaB) gene, partial cds; chloroplast.-
203-118787 1.000- 0.000Nuphar advena cytochrome b6/f complex subunit VIII (petN) gene, partial cds; chloroplast.-
204-2293105 0.943- 0.000Amborella trichopoda chloroplast petL gene for cytochrome b6-f subunit VI.-
205-11741741 1.000- 0.000Nuphar advena AP3-like protein gene, partial cds.-
206-11432432 1.000- 0.000Nuphar lutea GA dinucleotide repeat microsatellite sequence.-
207-11498498 1.000- 0.000Nuphar lutea GA dinucleotide repeat microsatellite sequence.-
208-11669669 1.000- 0.000Nuphar lutea TG/GA dinucleotide repeat microsatellite sequence.-
209-11540540 1.000- 0.000Nuphar lutea GA dinucleotide repeat microsatellite sequence.-
210-11538538 1.000- 0.000Nuphar lutea GA dinucleotide repeat microsatellite sequence.-
211-1110441044 1.000- 0.000Nuphar lutea GA/GT dinucleotide repeat microsatellite sequence.-
212-11303303 1.000- 0.000Nuphar lutea GA dinucleotide repeat microsatellite sequence.-
213-11679679 1.000- 0.000Nuphar lutea TG dinucleotide repeat microsatellite sequence.-
214-11824824 1.000- 0.000Nuphar lutea CT dinucleotide repeat microsatellite sequence.-
215-11464464 1.000- 0.000Nuphar lutea GA dinucleotide repeat microsatellite sequence.-
216-11169169 1.000- 0.000Nuphar lutea GA dinucleotide repeat microsatellite sequence.-
217-45404419 0.987- 0.000Nuphar sp. Palmer 689 ATPase subunit 8 (atp8) gene, partial cds; mitochondrial.
218-24275276 0.998- 0.000Nymphaea tetragona internal transcribed spacer 1, complete sequence.-
220-22213287 0.871- 0.000Nymphaea immutabilis subsp. kimberleyensis isolate NY380 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence.-
221-11650650 1.000- 0.000Nymphaea nouchali 28S ribosomal RNA gene, partial sequence.-
222-47483523 0.953- 0.000Nymphaea lotus isolate lot-w PsbA (psbA) gene, partial sequence; psbA-trnH intergenic spacer, complete sequence; and tRNA-His (trnH) gene, partial sequence; chloroplast.
223-11645645 1.000- 0.000Nymphaea mexicana internal transcribed spacer 1 and 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence.-
224-11354354 1.000- 0.000Nymphaea tetragona clone 1 ty3/gypsy-like retrotransposon reverse transcriptase (RT) gene, partial cds.-
225-25320354 0.975- 0.000Nymphaea tetragona clone 6 ty3/gypsy-like retrotransposon reverse transcriptase (RT) gene, partial cds.-
226-11353353 1.000- 0.000Nymphaea tetragona clone 5 ty3/gypsy-like retrotransposon reverse transcriptase-like (RT) gene, partial sequence.-
227-11344344 1.000- 0.000Nymphaea tetragona clone 3 athila-like retrotransposon reverse transcriptase (RT) gene, partial cds.-
228-12288288 1.000- 0.000Nymphaea tetragona clone 1 athila-like retrotransposon reverse transcriptase-like (RT) gene, partial sequence.-
229-14358439 0.933- 0.000Nymphaea tetragona clone 5 copia-like retrotransposon reverse transcriptase (RT) pseudogene, partial sequence.-
230-11436436 1.000- 0.000Nymphaea tetragona clone 4 copia-like retrotransposon reverse transcriptase (RT) pseudogene, partial sequence.-
231-11190190 1.000- 0.000Nymphaea tetragona ribosomal protein S14 (rps14) gene, partial cds; mitochondrial.-
232-11238238 1.000- 0.000Nymphaea tetragona succinate dehydrogenase subunit 3 (sdh3) gene, partial cds; mitochondrial.-
233-11272272 1.000- 0.000Nymphaea tetragona ribosomal protein S12 (rps12) gene, partial cds; mitochondrial.-
234-11520520 1.000- 0.000Nymphaea tetragona ribosomal protein L2 (rpl2) gene, partial cds; mitochondrial.-
235-22344649 0.765- 0.000Nymphaea tetragona cytochrome c oxidase subunit 2 (cox2) gene, partial cds; mitochondrial.-
236-11526526 1.000- 0.000Nymphaea colorata NcCRC mRNA for CRABS CLAW like protein, partial cds.-
237-22401421 0.976- 0.000Cabomba caroliniana CcFIL mRNA for FILAMENTOUS FLOWER like protein, partial cds.-
238-311605705 0.955- 0.000Nymphaea colorata x Nymphaea gigantea genotype 18x internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence.-
239-22474649 0.865- 0.000Nymphaea colorata tRNA-Lys (trnK) gene, intron; chloroplast.-
240-1112951295 1.000- 0.000Nymphaea colorata RNA polymerase II second largest subunit (RPB2) mRNA, partial cds.-
241-11506506 1.000- 0.000Nymphaea sp. EMK-2003 PISTILLATA-like protein PI gene, partial cds.-
242-11479479 1.000- 0.000Nymphaea sp. EMK-2003 APETALA3-like protein AP3 gene, partial cds.-
243-11941941 1.000- 0.000Nymphaea sp. EMK-2003 AGAMOUS-like protein mRNA, partial cds.-
244-1120312031 1.000- 0.000Nymphaea sp. EMK-2003 AGAMOUS-like protein gene, partial cds.-
245-1119361936 1.000- 0.000Nymphaea sp. EMK-2003 AGAMOUS-like protein gene, partial cds.-
246-1116321632 1.000- 0.000Nymphaea lotus RNA polymerase I largest subunit (rpa1) mRNA, partial cds.-
247-1116351635 1.000- 0.000Nymphaea lotus RNA polymerase III large subunit (rpc1) mRNA, partial cds.-
248-11572572 1.000- 0.000Nymphaea capensis isolate cap-db PsbA (psbA) gene, partial sequence; psbA-trnH intergenic spacer, complete sequence; and tRNA-His (trnH) gene, partial sequence; chloroplast.-
249-23473493 0.978- 0.000Nymphaea sp. Bergthorsson 0401 ATPase subunit 4 (atp4) gene, partial cds; mitochondrial.-
250-23602628 0.984- 0.000Amborella trichopoda cytochrome c biogenesis ccmC (ccmC) gene, partial cds; mitochondrial.-
251-23361391 0.974- 0.000Amborella trichopoda cytochrome oxidase subunit III (cox3) gene, partial cds; mitochondrial.-
252-23433686 0.861- 0.000Amborella trichopoda NADH dehydrogenase subunit 2 (nad2) pseudogene, exon 4; mitochondrial.-
253-23335341 0.991- 0.000Amborella trichopoda NADH dehydrogenase subunit 3 (nad3) gene, partial cds; mitochondrial.-
254-22499533 0.968- 0.000Nymphaea sp. Bergthorsson 0401 NADH dehydrogenase subunit 4 (nad4) gene, exon 4 and partial cds; mitochondrial.-
255-11423423 1.000- 0.000Nymphaea sp. Bergthorsson 0401 NADH dehydrogenase subunit 7 (nad7) gene, exons 1 and 4 and partial cds; mitochondrial.-
256-23447496 0.948- 0.000Nymphaea sp. Bergthorsson 0401 ribosomal protein L16 (rpl16) gene, partial cds; mitochondrial.-
257-22428448 0.978- 0.000Nymphaea sp. Bergthorsson 0401 ribosomal protein S1 (rps1) gene, partial cds; mitochondrial.-
258-22395416 0.975- 0.000Nymphaea sp. Bergthorsson 0401 ribosomal protein S7 (rps7) gene, partial cds; mitochondrial.-
259-23424466 0.951- 0.000Amborella trichopoda succinate oxido-reductase subunit 4 (sdh4) pseudogene, partial sequence; mitochondrial.-
262-11831831 1.000- 0.000Nymphaea jamesoniana mRNA for putative wuschel homeobox protein (wus gene).-
263-11597597 1.000- 0.000Nymphaea jamesoniana mRNA for putative wuschel-related homeobox 5 protein (wox5 gene).-
264-11123123 1.000- 0.000Nymphaea jamesoniana partial wox2 gene for putative wuschel-related homeobox 2 protein.-
265-11123123 1.000- 0.000Nymphaea jamesoniana partial wox3 gene for putative wuschel-related homeobox 3 protein.-
266-11123123 1.000- 0.000Nymphaea jamesoniana partial wox9 gene for putative wuschel-related homeobox 9 protein.-
267-11123123 1.000- 0.000Nymphaea jamesoniana partial wox11 gene for putative wuschel-related homeobox 11 protein.-
268-11870870 1.000- 0.000Nymphaea petersiana partial matR gene for maturase R, isolate NY-058.-
269-36611687 0.943- 0.000Victoria cruziana 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 26S ribosomal RNA gene, partial sequence.-
270-11560560 1.000- 0.000Brasenia schreberi BsFIL mRNA for FILAMENTOUS FLOWER like protein, partial cds.-
271-11353353 1.000- 0.000Brasenia schreberi clone 1 copia-like retrotransposon reverse transcriptase (RT) gene, partial cds.-
272-11717717 1.000- 0.000Cabomba caroliniana CcYAB2 mRNA for YABBY5 like protein, partial cds.-
273-34646698 0.962- 0.000Cabomba caroliniana internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence.-
274-11147147 1.000- 0.000Cabomba caroliniana tRNA-lys (trnK) gene, chloroplast gene for chloroplast RNA, partial intron sequence.-
275-11257257 1.000- 0.000Cabomba caroliniana maturase K (matK) gene, chloroplast gene encoding chloroplast protein, partial cds.-
276-225487 0.810- 0.000Ondinea purpurea maturase K (matK) gene, chloroplast gene encoding chloroplast protein, partial cds.-
277-1818761802 0.963- 0.000Chloranthus japonicus chloroplast rpl20 gene and rpl20-rps12 intergenic spacer, partial sequence.
278-11825825 1.000- 0.000Chloranthus spicatus MADS-box protein (AP1) mRNA, complete cds.-
279-12774830 0.966- 0.000Chloranthus spicatus transcription factor AP3 (AP3) mRNA, complete cds.-
280-11845845 1.000- 0.000Chloranthus spicatus transcription factor SEP3 (SEP3) mRNA, partial cds.-
281-11896896 1.000- 0.000Chloranthus spicatus AGAMOUS-like protein mRNA, partial cds.-
282-11859859 1.000- 0.000Chloranthus spicatus AGAMOUS-like protein mRNA, partial cds.-
283-11959959 1.000- 0.000Chloranthus spicatus MADS box containing protein PI mRNA, partial cds.-
284-1314654720 0.927- 0.000Sarcandra glabra 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and 26S ribosomal RNA gene, partial sequence.
285-77799986 0.923- 0.000Chloranthus erectus chloroplast rpl16 gene, intron, partial sequence.
286-11610610 1.000- 0.000Cabomba sp. putative 5.8S rRNA gene and internal transcribed spacers.-
287-116969 1.000- 0.000Victoria amazonica tRNA-lys (trnK) gene, chloroplast gene for chloroplast RNA, partial intron sequence.-
288-22267311 0.929- 0.000Amborella trichopoda rps10 gene, partial sequence; mitochondrial gene for mitochondrial product.-
289-22512516 0.996- 0.000Sarcandra glabra chloroplast rpl2, trnH, psbA genes, partial cds and complete sequence.-
290-11378378 1.000- 0.000Chloranthus serratus CsYAB1 mRNA for YABBY like transcription factor, partial cds.-
291-11339339 1.000- 0.000Chloranthus serratus CsYAB2 mRNA for YABBY like transcription factor, partial cds.-
292-1111401140 1.000- 0.000Trithuria submersa phytochrome C (PHYC) gene, partial cds.-
293-1119691969 1.000- 0.000Trithuria submersa NADH dehydrogenase subunit B (ndhB) gene, partial cds; and tRNA-Leu (trnL) gene, partial sequence; chloroplast.-
294-1126442644 1.000- 0.000Cabomba aquatica mRNA for putative protein kinase tousled (TSL gene).-
295-11660660 1.000- 0.000Cabomba aquatica microRNA for novel locus Caq-MIR164c.-
296-11791791 1.000- 0.000Cabomba aquatica microRNA for novel locus Caq-MIR164a.-
297-1113441344 1.000- 0.000Cabomba aquatica microRNA for novel locus Caq-MIR164b.-
298-11870870 1.000- 0.000Amborella trichopoda AmbF1 mRNA for YABBY2 like protein, complete cds.-
299-11742742 1.000- 0.000Amborella trichopoda AtPI mRNA for PISTILLATA-like protein, partial cds.-
300-1216821802 0.967- 0.000Amborella trichopoda AmPI gene for PISTILLATA-like protein, complete cds.-
301-12591667 0.943- 0.000Amborella trichopoda AmAP3 mRNA for APETALA3-like protein, complete cds.-
302-1111501150 1.000- 0.000Amborella trichopoda AmAP3 gene for APETALA3-like protein, partial cds.-
303-11689689 1.000- 0.000Amborella trichopoda AmbF2 mRNA for filamentous flower like protein, partial cds.-
304-1111461146 1.000- 0.000Amborella trichopoda chloroplast partial rpl16 gene intron for ribosomal protein L16 and rpl16 intron, isolate N116.-
305-1114201420 1.000- 0.000Amborella trichopoda trnT-trnL intergenic spacer, trnL gene and trnL-trnF intergenic spacer sequence.-
306-11432432 1.000- 0.000Amborella trichopoda APETALA3-like protein AP3-2 mRNA, partial cds.-
307-1116261626 1.000- 0.000Amborella trichopoda RNA polymerase I largest subunit (rpa1) mRNA, partial cds.-
308-11617617 1.000- 0.000Amborella trichopoda ATPase subunit 6 (atp6) gene, partial cds; mitochondrial.-
309-11386386 1.000- 0.000Amborella trichopoda ATPase subunit 6 (atp6) pseudogene, partial sequence; mitochondrial.-
310-12620623 0.998- 0.000Amborella trichopoda cytochrome c biogenesis ccmB (ccmB) pseudogene, partial sequence; mitochondrial.-
311-11142142 1.000- 0.000Amborella trichopoda cytochrome c biogenesis ccmF (ccmFN1) gene, partial cds; mitochondrial.-
312-11623623 1.000- 0.000Amborella trichopoda cytochrome c biogenesis ccmF (ccmFN1) gene, partial cds; mitochondrial.-
313-11529529 1.000- 0.000Amborella trichopoda cytochrome c biogenesis ccmF (ccmFN2) gene, partial cds; mitochondrial.-
314-13266266 1.000- 0.000Amborella trichopoda cytochrome oxidase subunit II (cox2) gene, exon 2 and partial cds; mitochondrial.-
315-11358358 1.000- 0.000Amborella trichopoda NADH dehydrogenase subunit 4 (nad4) gene, exon 4 and partial cds; mitochondrial.-
316-11537537 1.000- 0.000Amborella trichopoda NADH dehydrogenase subunit 4 (nad4) gene, partial cds; mitochondrial.-
317-11701701 1.000- 0.000Amborella trichopoda NADH dehydrogenase subunit 5 (nad5) pseudogene, partial sequence; mitochondrial.-
318-12536539 0.997- 0.000Amborella trichopoda NADH dehydrogenase subunit 6 (nad6) gene, partial cds; mitochondrial.-
319-1311551490 0.923- 0.000Amborella trichopoda NADH dehydrogenase subunit 7 (nad7) pseudogene, partial sequence; mitochondrial.-
320-11520520 1.000- 0.000Amborella trichopoda NADH dehydrogenase subunit 9 (nad9) gene, partial cds; mitochondrial.-
321-11959959 1.000- 0.000Amborella trichopoda ribosomal protein L2 (rpl2) pseudogene, partial sequence; mitochondrial.-
322-11308308 1.000- 0.000Amborella trichopoda ribosomal protein S13 (rps13) gene, partial cds; mitochondrial.-
323-12216223 0.984- 0.000Amborella trichopoda ribosomal protein S19 (rps19) pseudogene, partial sequence; mitochondrial.-
324-11965965 1.000- 0.000Amborella trichopoda ribosomal protein S4 (rps4) gene, partial cds; mitochondrial.-
325-11910910 1.000- 0.000Amborella trichopoda AGL9 mRNA, partial cds.-
326-129301107 0.920- 0.000Amborella trichopoda AGL2 mRNA, complete cds.-
327-11914914 1.000- 0.000Amborella trichopoda AG (AG) mRNA, complete cds.-
328-1110391039 1.000- 0.000Amborella trichopoda AGL6 (AGL6) mRNA, complete cds.-
329-11409409 1.000- 0.000Amborella trichopoda NADH dehydrogenase subunit 1 (nad1) gene, exon 2; mitochondrial gene for mitochondrial product.-
330-11458458 1.000- 0.000Amborella trichopoda NADH dehydrogenase subunit 1 (nad1) gene, exon 3 and partial cds; mitochondrial genes for mitochondrial products.-
331-11828828 1.000- 0.000Amborella trichopoda mRNA for putative crabs claw transcription factor (CRC gene).-
332-11656656 1.000- 0.000Amborella trichopoda microRNA for novel locus Atr-MIR164a.-
333-11140140 1.000- 0.000Amborella trichopoda partial wox13 gene for putative wuschel homeobox protein WOX13.-
334-11164164 1.000- 0.000Amborella trichopoda partial wox2 gene for putative wuschel homeobox protein WOX2.-
335-11161161 1.000- 0.000Amborella trichopoda partial wox3 gene for putative wuschel homeobox protein WOX3.-
336-11164164 1.000- 0.000Amborella trichopoda partial wox5 gene for putative wuschel homeobox protein WOX5.-
337-11164164 1.000- 0.000Amborella trichopoda partial wox4 gene for putative wuschel homeobox protein WOX4.-
338-11164164 1.000- 0.000Amborella trichopoda partial wus gene for putative wuschel homeobox protein WUS.-
339-11160160 1.000- 0.000Amborella trichopoda partial wox1 gene for putative wuschel homeobox protein WOX1.-
340-11158158 1.000- 0.000Amborella trichopoda partial wox9 gene for putative wuschel homeobox protein WOX9.-
341-11390390 1.000- 0.000Sarcandra chloranthoides chloroplast rpl20 gene and rpl20-rps12 intergenic spacer, partial sequence.-
342-1116311631 1.000- 0.000Ascarina rubricaulis large subunit ribosomal RNA gene, partial sequence; mitochondrial.-

  1 Maximum Alignment Density
  2 "Q" alignment comparison score between default Clustal W and Muscle alignments
  3 Level of resolution (consensus fork index) of the strict consensus tree built from the two bootstrap trees from Clustal W and Muscle alignments.
  4 Trees are unrooted majority rule consensus trees from 'fast bootstrap parsimony' algorithm in PAUP* 4.0 using default ClustalW alignments. Expect performance to deteriorate with low MAD or Q scores, large number of taxa, and high sequence divergence (largely owing to alignment problems). Only trees for (taxon) phylogenetically informative clusters with fewer than 1000 sequences are generated.


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