Cluster set at subtree whose root is 'Haptophyceae'

Click here to see taxon by cluster Data Availability Matrix
Cluster IDParent clusterTaxIDsGIsLminLmaxMAD1Q2Tcfi3Defline of longest sequenceTree4
1-689261530 0.798- 0.000Emiliania huxleyi photosystem II 47 kDa protein (psbB) gene, complete cds; chloroplast.
3-10147471083 0.823- 0.000Emiliania huxleyi photosystem II protein D1 (psbA) gene, complete cds; chloroplast.
4-31384862640 0.462- 0.000Pleurochrysis carterae chloroplast genes for ribulose-1,5-bisphosphate carboxylase/oxygenase large and small subunits, complete cds.
10-4412421266 0.995- 0.000Isochrysis sp. SAG 927-2 photosystem I P700 chlorophyll a apoprotein A2 (psaB) gene, partial cds; chloroplast.
14-9148751530 0.715- 0.000Prymnesium parvum beta-tubulin-like gene, partial sequence.
15-111510981228 0.942- 0.000Prymnesium parvum alpha-tubulin gene, partial cds.
16-4616691893 0.923- 0.000Prymnesium parvum heat shock protein 90 gene, partial cds.
25-568881056 0.868- 0.000Emiliania huxleyi photosystem II protein D2 (psbD) gene, complete cds; chloroplast.
53-1642572881818 0.885- 0.000Chrysochromulina parkeae partial 18S rRNA gene, strain Kawachi, Japan.
54-37456961485 0.648- 0.000Isochrysis sp. plastid 16S rRNA gene.
60-8912222259 0.649- 0.000Emiliania huxleyi photosystem I P700 apoprotein A1 (psaA) gene, complete cds; chloroplast.
65-448321867 0.664- 0.000Ochrosphaera neapolitana plastid atpB gene cluster.
67-788971416 0.749- 0.000Emiliania huxleyi photosystem II 44 kDa protein (psbC) gene, complete cds; chloroplast.
90-8206291095 0.782- 0.000Pleurochrysis carterae clone PAC11 type 2 actin mRNA, partial cds.
93-53647471039 0.736- 0.000Cricosphaera roscoffensis tufA gene for translation elongation factor Tu, partial cds.
99-80109456893 0.796- 0.000Rebecca salina strain RCC1545 28S ribosomal RNA gene, partial sequence.
106-55378562 0.888- 0.000Chrysochromulina sp. G3-53-A2 partial 18S rRNA gene, clone G3-53-A2.
188-4529604019 0.811- 0.000Prymnesium patelliferum internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence.

  1 Maximum Alignment Density
  2 "Q" alignment comparison score between default Clustal W and Muscle alignments
  3 Level of resolution (consensus fork index) of the strict consensus tree built from the two bootstrap trees from Clustal W and Muscle alignments.
  4 Trees are unrooted majority rule consensus trees from 'fast bootstrap parsimony' algorithm in PAUP* 4.0 using default ClustalW alignments. Expect performance to deteriorate with low MAD or Q scores, large number of taxa, and high sequence divergence (largely owing to alignment problems). Only trees for (taxon) phylogenetically informative clusters with fewer than 1000 sequences are generated.


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