Cluster set at node 'Ursus maritimus' (and only this node)

Click here to see taxon by cluster Data Availability Matrix
Cluster IDParent clusterTaxIDsGIsLminLmaxMAD1Q2Tcfi3Defline of longest sequenceTree4
013511279279 1.000- 0.000Thalarctos maritimus growth factor receptor-bound protein 2 mRNA, partial cds.-
113611344344 1.000- 0.000Thalarctos maritimus peptidyl-glycine alpha-amidating monooxygenase precursor, mRNA, partial cds.-
213711647647 1.000- 0.000Ursus maritimus luteinizing hormone receptor mRNA, partial cds.-
313811852852 1.000- 0.000Ursus maritimus follicle-stimulating hormone receptor mRNA, partial cds.-
413911681681 1.000- 0.000Ursus maritimus prolactin receptor mRNA, partial cds.-
52913287287 1.000- 0.000Ursus maritimus isolate CAS4 cytochrome b gene, partial cds; mitochondrial gene for mitochondrial product.-
627121672317017 0.991- 0.000Ursus maritimus mitochondrion, complete genome.-
7140125237237 1.000- 0.000Ursus maritimus MHC class II DR alpha 1 domain (Urma-DRB) gene, Urma-DRB*12 allele, exon 2 and partial cds.-
891110811081 1.000- 0.000Ursus maritimus partial vWF gene for von Willebrand factor, exon 28.-
91012397397 1.000- 0.000Ursus maritimus partial zfy gene for Y-linked zinc finger protein.-
10111212661274 0.997- 0.000Ursus maritimus sry gene for sex determining Y protein, exon 1.-
111211381381 1.000- 0.000Ursus maritimus partial tRNA-Sec gene for transfer RNA-Sec.-
121312381459 0.915- 0.000Ursus maritimus partial fes gene for feline sarcoma protooncogene, exons 13-14.-
13141112781278 1.000- 0.000Ursus maritimus partial ube1y gene, exon 18.-
141511235235 1.000- 0.000Ursus maritimus partial dio1 gene for deiodinase iodothyronine type I, exons 1.-
151611491491 1.000- 0.000Ursus maritimus partial dio2 gene for deiodinase iodothyronine type II, exon 2.-
161711930930 1.000- 0.000Ursus maritimus partial tg gene for thyroglobulin, exon 9.-
171811310310 1.000- 0.000Ursus maritimus partial sis gene for sodium iodide symporter, exons 6-7.-
181911763763 1.000- 0.000Ursus maritimus partial tshb gene for thyroid stimulating hormone beta subunit, exons 1-2.-
192011372372 1.000- 0.000Ursus maritimus partial trh gene for thyrotropin releasing hormone, exon 2.-
205315148243 0.844- 0.000Ursus maritimus isolate PBL23739X tooth enamel protein (AMELX) gene, exon 5 and partial cds.-
21901367119 0.787- 0.000Ursus maritimus isolate PBX10616 SRY (SRY) gene, partial cds.-
22141129196 0.974- 0.000Ursus maritimus isolate PBX11021 SRY-like gene, partial sequence.-
2314211908908 1.000- 0.000Ursus maritimus Hox8 early enhancer sequence.-
24211112741274 1.000- 0.000Ursus maritimus interphotoreceptor retinoid binding protein (irbp) gene, partial cds.-
25221110251025 1.000- 0.000Ursus maritimus transthyretin gene, intron 1.-
2614311155155 1.000- 0.000Ursus maritimus abnormal spindle-like microcephaly-associated protein (ASPM) gene, exon 18 and partial cds.-
279111967967 1.000- 0.000Ursus maritimus G protein-coupled receptor 33 (GPR33) gene, partial sequence.-
28811254254 1.000- 0.000Ursus maritimus dopamine receptor D4 gene, exon 3 and partial cds.-
299211359359 1.000- 0.000Ursus maritimus EPM2B gene repeat region, partial sequence.-
3014411967967 1.000- 0.000Ursus maritimus rhodopsin mRNA, partial cds.-
3114511991991 1.000- 0.000Ursus maritimus visual pigment mRNA, partial cds.-
3214611398398 1.000- 0.000Ursus maritimus visual pigment mRNA, partial cds.-
3314711354354 1.000- 0.000Ursus maritimus nicotinic cholinergic receptor alpha polypeptide 1 precursor (CHRNA1) gene, intron 8 and partial cds.-
3414811599599 1.000- 0.000Ursus maritimus growth hormone receptor (GHR) gene, partial cds.-
3514911270270 1.000- 0.000Ursus maritimus rhodopsin (RHO1) gene, partial cds.-
3695125641037 0.772- 0.000Ursus maritimus voucher UAM:Mamm:47075 16S ribosomal RNA gene, partial sequence; mitochondrial.-
3715011146146 1.000- 0.000Ursus maritimus claudin-1 gene, partial cds.-
384114229229 1.000- 0.000Ursus maritimus isolate W_Russia control region, partial sequence; mitochondrial.-
3915111105105 1.000- 0.000Ursus maritimus surfactant protein C (SP-C) gene, partial cds.-
402811922922 1.000- 0.000Ursus maritimus melanocortin 4 receptor (MC4R) gene, partial cds.-
41301271135 0.763- 0.000Ursus maritimus mitochondrion tRNA-Thr and tRNA-Pro genes.-
427311397397 1.000- 0.000Thalarctos maritimus mitochondrial cytochrome b gene, 5' end.-
439611346346 1.000- 0.000Thalarctos maritimus mitochondrial 12S ribosomal RNA gene fragment.-
44291311401140 1.000- 0.000U.maritimus mitochondrial cytochrome b gene.-
4515211175175 1.000- 0.000U.maritimus mRNa for amyloid precursor protein (APP) (partial).-
469711520520 1.000- 0.000U.maritimus mitochondrial D-loop tandem repeat.-
47421117681768 1.000- 0.000Ursus maritimus ALAS2 gene, intron 7, partial sequence.-
484311999999 1.000- 0.000Ursus maritimus PLP gene for proteolipid protein, intron 3, partial sequence.-
494411521521 1.000- 0.000Ursus maritimus SMCX gene, intron 4, complete sequence.-
50451110861086 1.000- 0.000Ursus maritimus SMCY gene, intron 4, complete sequence.-
514611856856 1.000- 0.000Ursus maritimus ZFX gene, final intron, complete sequence.-
52471110531053 1.000- 0.000Ursus maritimus ZFY gene, final intron, complete sequence.-

  1 Maximum Alignment Density
  2 "Q" alignment comparison score between default Clustal W and Muscle alignments
  3 Level of resolution (consensus fork index) of the strict consensus tree built from the two bootstrap trees from Clustal W and Muscle alignments.
  4 Trees are unrooted majority rule consensus trees from 'fast bootstrap parsimony' algorithm in PAUP* 4.0 using default ClustalW alignments. Expect performance to deteriorate with low MAD or Q scores, large number of taxa, and high sequence divergence (largely owing to alignment problems). Only trees for (taxon) phylogenetically informative clusters with fewer than 1000 sequences are generated.


Back to taxonomic hierarchy view