Cluster set at subtree whose root is 'Cryptophyta'

Click here to see taxon by cluster Data Availability Matrix
Cluster IDParent clusterTaxIDsGIsLminLmaxMAD1Q2Tcfi3Defline of longest sequenceTree4
5-12126012292054 0.852- 0.000Hanusia phi nucleomorph 18S ribosomal RNA gene, complete sequence.
7-10118421039 0.872- 0.000Proteomonas sulcata tufA gene for translation elongation factor Tu, partial cds.
8-68932989 0.975- 0.000Hemiselmis rufescens strain CCMP440 16S small subunit ribosomal RNA gene, partial sequence; tRNA-Ile and tRNA-Ala genes, complete sequence; and 23S large subunit ribosomal RNA gene, partial sequence; chloroplast.
10-449041239 0.864- 0.000Pyrenomonas salina glyceraldehyde-3-phosphate dehydrogenase precursor (GapC1) mRNA, nuclear gene encoding chloroplast protein, complete cds.
11-24277151490 0.720- 0.000P.salina plastidal 16S ribosomal RNA.
18-18305841299 0.927- 0.000Cryptomonas marssonii plastid partial rbcL gene for large subunit of RuBisCO, strain CCAC 0103.
21-99798957 0.912- 0.000Chilomonas paramecium photosystem II reaction center protein D1 (psbA) gene, partial cds; chloroplast gene for chloroplast product.
23-4412411395 0.963- 0.000Pyrenomonas helgolandii photosystem I P700 chlorophyll A apoprotein A1 (psaA) gene, partial cds; chloroplast gene for chloroplast product.
25-447591057 0.896- 0.000Proteomonas sulcata chromoplast psbC gene for photosystem II 44 kDa reaction center protein, partial cds.
26-44798892 0.962- 0.000Proteomonas sulcata chromoplast psbD gene for photosystem II D2 protein, partial cds.
27-15286141167 0.714- 0.000Goniomonas truncata clone gtactin3 actin gene, partial cds.
35-44539544 0.994- 0.000Cryptophyceae sp. BLA73 18S ribosomal RNA gene, partial sequence.
37-7116551258 0.803- 0.000Goniomonas truncata clone gttub6 beta tubulin mRNA, partial cds.
70-7158481399 0.809- 0.000Goniomonas truncata alpha-tubulin (atub) gene, partial cds.
78-56989581761 0.725- 0.000Cryptomonas sp. M2195 5.8S rRNA gene (partial), 28S rRNA gene (partial) and ITS2, strain M2195.
85-5529493373 0.928- 0.000Goniomonas truncata clone gtlsu large subunit ribosomal RNA gene, partial sequence.

  1 Maximum Alignment Density
  2 "Q" alignment comparison score between default Clustal W and Muscle alignments
  3 Level of resolution (consensus fork index) of the strict consensus tree built from the two bootstrap trees from Clustal W and Muscle alignments.
  4 Trees are unrooted majority rule consensus trees from 'fast bootstrap parsimony' algorithm in PAUP* 4.0 using default ClustalW alignments. Expect performance to deteriorate with low MAD or Q scores, large number of taxa, and high sequence divergence (largely owing to alignment problems). Only trees for (taxon) phylogenetically informative clusters with fewer than 1000 sequences are generated.


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