Cluster set at subtree whose root is 'Alveolata'

Click here to see taxon by cluster Data Availability Matrix
Cluster IDParent clusterTaxIDsGIsLminLmaxMAD1Q2Tcfi3Defline of longest sequenceTree4
1-651586301962 0.575- 0.000O.granulifera gene for alpha-tubulin.
2-501197432159 0.562- 0.000Gastrostyla steinii beta-tubulin gene, complete cds.
3-58753382464 0.351- 0.000Heterocapsa pygmaea minicircle PSII D1 reaction center protein (psbA2) gene, complete cds; chloroplast.
4-5922443772 0.748- 0.000Protoceratium reticulatum 23S ribosomal RNA gene, complete sequence; chloroplast gene for chloroplast product.
7-17189751460 0.759- 0.000Ceratium horridum plastid PsbC mRNA, complete cds, minicircle mRNA encoding plastid protein.
8-11128201236 0.790- 0.000Gonyaulax polyedra photosystem II protein D2 (psbD) mRNA, complete cds; chloroplast.
9-3661105171288352 0.125- 0.000Cochlodinium polykrikoides strain CCPK06 external transcribed spacer, partial sequence; small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and large subunit ribosomal RNA gene, complete sequence; and external transcribed spacer, partial sequence.-
10-1217477705 0.855- 0.000Gymnodinium sp. USA29-9 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and 24S ribosomal RNA gene, partial sequence.
12-99161168 0.976- 0.000G. polyedra 24S rRNA divergent domain D8.
14-1012625122418 0.358- 0.000Crypthecodinium cohnii mitochondrial DNA for cytochrome oxidase subunit I, partial cds.
19-419333366 0.932- 0.000Ostreopsis lenticularis internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence.
22-1033374801771 0.551- 0.000Prorocentrum minimum isolate Pmactin1 actin mRNA, complete cds.
23-4511261224 0.964- 0.000Katodinium rotundatum cytochrome oxidase subunit 1 (cox1) mRNA, partial cds; mitochondrial.
73-131304151057 0.757- 0.000Prorocentrum donghaiense proliferating cell nuclear antigen mRNA, complete cds.
74-889961382 0.920- 0.000Peridiniopsis penardii chloroplast rbcL gene for ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial cds.
80-56206484642 0.870- 0.000Peridinium aciculiferum isolate PAER-3 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence.
81-671613341543 0.547- 0.000Karlodinium micrum clone v cytochrome b-like gene, complete sequence; mitochondrial.
83-12148181568 0.688- 0.000Lepidodinium chlorophorum GapC1-p mRNA for glyceraldehyde-3-phosphate dehydrogenase, complete cds.
84-13147271211 0.740- 0.000Gonyaulax polyedra glyceraldehyde-3-phosphate dehydrogenase (GAPDH) mRNA, complete cds.
88-1114192212 0.927- 0.000Scrippsiella rotunda strain SZN66 internal transcribed spacer 1, complete sequence.
90-58195206 0.973- 0.000Scrippsiella inulfa strain SZN62 internal transcribed spacer 2, complete sequence.
97-131413242540 0.681- 0.000Crypthecodinium cohnii Hsp90 mRNA, complete cds.
115-629676822 0.900- 0.000Pfiesteria piscicida clone CCMP2423 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence.
155-1569530668 0.896- 0.000Prorocentrum minimum strain PMDH01 18S small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S large subunit ribosomal RNA gene, partial sequence.
170-570543643 0.927- 0.000Prorocentrum lima genes for ITS1, 5.8S rRNA, ITS2, complete sequence, strain: Tahiti.
171-9916421761 0.982- 0.000Prorocentrum lima 18S ribosomal RNA gene, partial sequence.
172-1011295360 0.913- 0.000Eimeria acervulina RAPD-SCAR marker Ac-G02-360 genomic sequence.
177-44438618 0.852- 0.000Symbiodinium microadriaticum calmodulin (SMCaM1) mRNA, partial cds.
178-61074406900 0.183- 0.000Symbiodinium sp. ribulosebisphosphate carboxylase form II polyprotein precursor (rbcA) gene, partial cds.
204-484841192 0.686- 0.000Karenia mikimotoi plastid psbA gene for photosystem II core 32 kDa protein, complete cds.
206-18374471508 0.807- 0.000Gymnodinium galatheanum small subunit ribosomal RNA gene, complete sequence; chloroplast gene for chloroplast product.
209-11285041064 0.663- 0.000Symbiodinium sp. G15 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
230-410438636 0.769- 0.000Amphidinium massartii voucher NEPCC 802 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence.
263-479071928 0.774- 0.000Lepidodinium chlorophorum GapC1-fd mRNA for glyceraldehyde-3-phosphate dehydrogenase, complete cds.
283-517365671 0.891- 0.000Karlodinium micrum clone GgaITSC35 internal transcribed spacer 1, complete sequence; 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence.
285-889431332 0.774- 0.000Symbiodinium sp. JCUCS-1 GapC3 mRNA for glyceraldehyde-3-phosphate dehydrogenase, partial cds.
304-615552673 0.903- 0.000Karenia mikimotoi voucher NEPCC 665 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence.
408-1523297923 0.506- 0.000Karlodinium veneficum strain CCMP1975 clone 2 cytochrome b (cob) fragment genomic sequence.
423-7923686762 0.692- 0.000Alexandrium tamarense luciferase gene, complete cds.
465-881459633 0.826- 0.000Alexandrium sp. gz 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
528-68476479 0.999- 0.000Alexandrium tamarense strain CCMP115 luciferase gene, partial cds.
537-261585951188 0.726- 0.000Sarcocystis cf. falcatula large subunit ribosomal RNA gene, partial sequence.
541-8104483604 0.892- 0.000Alexandrium minutum voucher CS-323/08 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence.
596-614427626 0.881- 0.000Protoceratium reticulatum 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
637-45633988 0.861- 0.000Ceratium lineatum large subunit ribosomal RNA gene, partial sequence.
690-1034447470 0.981- 0.000Gambierdiscus sp. C-4 genes for 18S rRNA, ITS1, 5.8S rRNA, ITS2, 28S rRNA, partial and complete sequence, clone: 2.
691-934382435 0.938- 0.000Gambierdiscus sp. A-5 genes for 18S rRNA, ITS1, 5.8S rRNA, ITS2, 28S rRNA, partial and complete sequence, clone: 5.
706-351143041116 0.542- 0.000Hematodinium sp. ex Carcinus maenas Cm887 isolate Cm887m2 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
709-44301303 0.998- 0.000Hematodinium sp. WJX-2006-1a internal transcribed spacer 1, partial sequence.
711-7445791838 0.543- 0.000Symbiodinium sp. RKT-203 clone 41 peridinin chlorophyll-a binding protein apoprotein precursor (pcp) genes, partial cds; nuclear genes for chloroplast products.
715-15312281868 0.508- 0.000Isotricha prostoma partial mRNA for Polyubiqutin 2 (polyubiqutin 2 gene).
718-27112294770 0.670- 0.000Symbiodinium sp. clade D genes for 18S rRNA, ITS1, 5.8S rRNA, ITS2, 28S rRNA, partial and complete sequence, clone: Cc-19-07.
719-1036191305 0.918- 0.000Symbiodinium sp. clade D isolate 08_WA-910d 5.8S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
728-46119321708 0.851- 0.000Symbiodinium sp. clade D chloroplast partial 23S rRNA gene, isolate 542X.
764-55529529 1.000- 0.000Symbiodinium sp. HN8.2 gene for large subunit ribosomal RNA, partial sequence.
776-68234335 0.900- 0.000Symbiodinium sp. G4 ITS2, isolate G4.
822-410208273 0.931- 0.000Symbiodinium sp. ex Eunicea tourneforti isolate 681 9 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, complete sequence; and 5.8S ribosomal RNA gene, partial sequence.
900-696758811 0.996- 0.000Eimeria maxima strain ESS01 cytochrome c oxidase subunit I (COI) gene, partial cds; mitochondrial.
917-242411311229 0.946- 0.000Caryospora sp. 23S ribosomal RNA gene, partial sequence; apicoplast gene for apicoplast product.
952-1013107122 0.942- 0.000C.cohnii 5S ribosomal RNA.
982-10119981379 0.805- 0.000Eimeria arizonensis 16S ribosomal RNA gene, partial sequence; apicoplast gene for apicoplast product.
1026-1010702705 0.997- 0.000Eimeria langebarteli ORF470 gene, partial cds; apicoplast.
1101-8309511863 0.547- 0.000Cyclospora cayetanensis heat shock protein 70 gene, partial cds.
1115-579999 1.000- 0.000Sarcocystis muris myosin A mRNA, partial cds.
1116-559999 1.000- 0.000Sarcocystis muris myosin B mRNA, partial cds.
1117-559999 1.000- 0.000Sarcocystis muris myosin C mRNA, partial cds.
1118-449999 1.000- 0.000Sarcocystis muris myosin E mRNA, partial cds.
1120-57122292 0.741- 0.000Sarcocystis hirsuta strain 08-01 18S ribosomal RNA gene, partial sequence.
1133-77258258 1.000- 0.000Isospora sp. iSAT1 cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial.
1134-44261277 0.969- 0.000small subunit rRNA {D/A-region and B-region} [Sarcocystis cruzi, rRNA Partial, 275 nt, segment 2 of 2].
1150-1343202575 0.476- 0.000Sarcocystis neurona strain UCD-1 RAPD marker.
1154-6433531077 0.842- 0.000Sarcocystis falcatula strain Florida 1 18S ribosomal RNA partial sequence and internal transcribed spacer 1, complete sequence.
1155-67411503 0.949- 0.000Sarcocystis falcatula RNA polymerase beta subunit (rpoB) gene, partial cds.
1156-713270296 0.940- 0.000Sarcocystis neurona enolase 2 gene, partial cds.
1196-453273533 0.777- 0.000Hammondia hammondi 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, complete sequence; and 5.8S ribosomal RNA gene, partial sequence.
1205-610232451 0.694- 0.000Besnoitia akodoni 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, complete sequence; and 5.8S ribosomal RNA gene, partial sequence.
1215-311172903607 0.457- 0.000Cryptosporidium serpentis heat shock protein 70 (HSP70) gene, partial cds.
1216-37912921032 0.555- 0.000Cryptosporidium sp. 351 oocyst wall protein (OWP) gene, partial cds.
1219-53121217507 0.708- 0.000Cryptosporidium sp. NJCF-2 heat shock protein 70 (HSP70) gene, partial cds.
1222-4810171857 0.638- 0.000Cryptosporidium baileyi strain GBHN mitochondrial heat shock protein 60 gene, partial cds; nuclear gene for mitochondrial product.
1223-485611008 0.668- 0.000Cryptosporidium baileyi strain ABHN mitochondrial alternative oxidase gene, partial cds; nuclear gene for mitochondrial product.
1230-414176348 0.673- 0.000Cryptosporidium hominis transmembrane adhesin (MIC1) gene, intron and partial cds.
1231-135073021343 0.549- 0.000Cryptosporidium hominis isolate MQ145 60 kDa glycoprotein (gp60) gene, gp60-Id allele, complete cds.
1233-424133257 0.538- 0.000Cryptosporidium meleagridis strain 1689 unknown gene, ds-RNA element, partial sequence.
1234-4413741502 0.974- 0.000Cryptosporidium felis isolate 353 small dsRNA element, complete sequence.
1235-413230314 0.941- 0.000Cryptosporidium felis isolate cat234 heat shock protein 70 (hsp70) gene, partial cds.
1243-564283628 0.625- 0.000Cryptosporidium meleagridis isolate hhf10 beta-tubulin gene, partial cds.
1247-56272408 0.889- 0.000Cryptosporidium sp. LLX-2003 dihydrofolate reductase gene, partial cds.
1250-410211230 0.930- 0.000Cryptosporidium andersoni clone 14-13 18S ribosomal RNA gene, partial sequence.
1251-67644650 0.996- 0.000Cryptosporidium sp. cervine genotype isolate 11689 90 kDa heat shock protein (hsp90) gene, partial cds.
1259-41002471029 0.424- 0.000Hammondia heydorni isolate CZ-1 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
1270-44394404 0.988- 0.000Cystoisospora suis internal transcribed spacer 1, partial sequence.
1283-1919219260 0.976- 0.000Cryptosporidium sp. cat324 18S ribosomal RNA gene, partial sequence.
1325-4141608862 0.897- 0.000Monocystis sp. T2_03 18S rRNA gene (partial), ITS1, 5.8S rRNA gene, ITS2 and 28S rRNA gene (partial), clone T2_03.
1334-141519301861655 0.352- 0.000Hepatocystis sp. IZ09 cytochrome b-like gene, complete sequence; mitochondrial.-
1335-3645855296684 0.888- 0.000Leucocytozoon majoris mitochondrion, complete genome.
1337-1681235864 0.493- 0.000Plasmodium lophurae 17S ribosomal RNA gene.
1339-49556594 0.955- 0.000Plasmodium chabaudi from Australia large subunit ribosomal RNA gene, partial sequence.
1340-941128841566 0.631- 0.000Plasmodium malariae from Burma cytochrome c oxidase subunit I (COX1) gene, complete cds; mitochondrial gene for mitochondrial product.
1341-1191443161160 0.459- 0.000Leucocytozoon caulleryi apicoplast clpc gene for caseinolytic protease C, partial cds.
1342-4449166206 0.924- 0.000Haemoproteus picae haplotype 1534 adenylosuccinate lyase (asl) gene, partial cds.
1343-86351815790 0.929- 0.000Plasmodium coatneyi msp1 gene for merozoite surface protein-1, complete cds.
1344-26396501230 0.749- 0.000Plasmodium fieldi apicoplast tufA gene for elongation factor Tu, partial cds, strain: N3.
1345-111919402192 0.950- 0.000Plasmodium gonderi clone 17 beta-tubulin (betatub) gene, partial cds.
1346-9107581080 0.770- 0.000Plasmodium knowlesi (clones pRV(20,21)) cell division cycle protein (cdc2) gene, intron.
1347-61986121858 0.609- 0.000Plasmodium hylobati merozoite surface protein 1 42 kDa fragment (mspI) gene, partial cds.
1348-11159351498 0.881- 0.000Plasmodium cynomolgi apicoplast gene for small subunit ribosomal RNA, partial sequence, strain: PtII.
1349-111426522700 0.985- 0.000Plasmodium inui apicoplast gene for large subunit ribosomal RNA, partial sequence, strain: Celebes.
1350-111219322298 0.866- 0.000Plasmodium fieldi apicoplast clpc gene for caseinolytic protease C, partial cds, strain: A.b.introlatus.
1351-4889809336 0.977- 0.000Plasmodium fragile normocyte-binding protein 1 gene, complete cds.
1352-11146001393 0.828- 0.000Plasmodium brasilianum isolate Peru II glyceraldehyde-3-phosphate dehydrogenase gene, partial cds.
1355-4077210236 0.987- 0.000Haemoproteus sp. GRW1 dihydrofolate reductase/thymidylate synthase (DHFR-TS) gene, partial cds.
1356-43716181842 0.885- 0.000Plasmodium gallinaceum thrombospondin-related anonymous protein (TRAP) gene, partial cds.
1357-84122256706 0.658- 0.000Leucocytozoon toddi isolate 120429885 cytochrome b gene, partial cds; mitochondrial.
1358-665391 0.879- 0.000Plasmodium sp. INDC cytochrome b (cytb) gene, partial cds; mitochondrial.
1368-54018272160 0.871- 0.000Plasmodium gallinaceum dihydrofolate reductase/thymidylate synthase (DHFR/TS) gene, complete cds.
1390-525234410 0.803- 0.000Plasmodium yoelii merozoite surface protein-1 gene, partial cds.
1391-51352986409 0.855- 0.000P.chabaudi major merozoite surface antigen mRNA, complete cds.
1393-45546585 0.963- 0.000Plasmodium yoelii yoelii dihydrofolate reductase (DHFR) gene, partial cds.
1394-449751009 0.990- 0.000Plasmodium vinckei vinckei (clones pRV(25,30)) cell division cycle protein (cdc2) gene, intron.
1408-7178241602 0.629- 0.000Plasmodium vinckei fructose 1,6-bisphosphate aldolase gene, partial cds.
1419-449801097 0.932- 0.000Plasmodium yoelii yoelii GTP cyclohydrolase I (gtp-ch) gene, complete cds.
1422-8136421260 0.572- 0.000Plasmodium yoelii mRNA for 21 kDa ookinete surface protein, complete cds.
1425-1320602987 0.652- 0.000Plasmodium vinckei lentum strain 194ZZ cysteine protease gene, partial cds.
1426-1319518518 1.000- 0.000Plasmodium yoelii nigeriensis strain N67 dihydrofolate reductase gene, partial cds.
1427-1319549649 0.978- 0.000Plasmodium yoelii killicki isolate 193L ORF470 gene, partial cds; apicoplast.
1429-4520733140 0.797- 0.000Plasmodium cynomolgi heat shock protein 70 (hsp70) gene, complete cds.
1431-425515042307 0.725- 0.000P.fragile apical membrane antigen 1 (AMA1/AG352) gene, complete cds.
1520-916593603 0.992- 0.000Haemoproteus sp. ex blue-necked tanager large subunit ribosomal RNA gene, partial sequence; plastid.
1522-432387701 0.843- 0.000Plasmodium ovale superoxide dismutase gene, partial cds.
1524-625801951 0.954- 0.000Plasmodium reichenowi ldh gene for lactate dehydrogenase, complete cds.
1529-5512721395 0.945- 0.000Plasmodium vinckei lentum circumsporozoite protein (CS) gene, complete cds.
1531-712489815 0.633- 0.000Plasmodium yoelii nigeriensis isolate N67 RNA polymerase II (Rbp1) gene, partial cds.
1560-515619765 0.851- 0.000Plasmodium yoelii merozoite surface protein 4/5 (MSP4/5) gene, complete cds.
1623-51218102926 0.795- 0.000Plasmodium yoelii yoelii pyebl gene for erythrocyte-binding-like protein, partial cds, strain: 33X(Pr3).
1754-16389982551 0.721- 0.000T.annulata 70 kD heat shock protein (hsp 70.1) gene, complete cds, clone hsp70.1.
1757-41584621062 0.783- 0.000Theileria parva 32 kDa surface antigen mRNA, complete cds.
1809-5758476005 0.986- 0.000Babesia bigemina mitochondrial cox1, cox3, cob genes for cytochrome oxidase subunit I, cytochrome oxidase subunit III, cytochrome b, complete cds, and fragmented rRNA genes.
1830-37937631918 0.444- 0.000Theileria sergenti mRNA for Ts-32K protein, complete cds.
1831-622601684 0.923- 0.000Theileria sergenti isolate Jilin 23 kDa piroplasm surface protein gene, complete cds.
1879-79412412 1.000- 0.000Theileria sp. ex Miyazaki Sika Deer isolate 1 piroplasm major immunodominant protein gene, partial cds.
1909-46364460 0.961- 0.000Babesia caballi partial beta tubulin gene, exons 1-2.
1920-457201182 0.815- 0.000Babesia bigemina cytochrome b gene, complete cds; mitochondrial.
2013-6617962264 0.888- 0.000Babesia gibsoni CCTeta gene for eta subunit of chaperonin containing t-complex polypeptide 1, complete cds.
2025-5299351044 0.944- 0.000Babesia divergens 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
2036-511333333 1.000- 0.000Babesia sp. GoA3 heat shock protein 70 (hsp70) gene, partial cds.
2067-79372423 0.920- 0.000Babesia sp. FD1 5.8S ribosomal RNA gene and internal transcribed spacer 2, partial sequence.
2086-6721662392 0.968- 0.000Babesia sp. BQ1/Lintan heat shock protein 90 (hsp90) mRNA, complete cds.
2096-2729344629 0.622- 0.000Epidinium sp. gene for 28S ribosomal RNA (partial).
2097-121284115 0.916- 0.000Urostyla sp. ABT-1992 large subunit ribosomal RNA gene, internal domain.
2098-6612241846 0.721- 0.000Telotrochidium henneguyii translation elongation factor 1-alpha (TEF1) gene, partial cds.
2107-410150267 0.744- 0.000B.japonicum H4 gene fragment, clone BjMH4-1.
2122-68120123 0.979- 0.000Euplotes aediculatus macronuclear 5S ribosomal RNA gene, partial sequence.
2158-2121318409 0.908- 0.000Vorticella campanula 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, complete sequence; and 5.8S ribosomal RNA gene, partial sequence.
2161-77189190 0.998- 0.000Colpoda steinii 23S ribosomal RNA gene, D2 domain, partial sequence.
2277-430547618 0.893- 0.000Paramecium multimicronucleatum mitochondrial partial cytb gene for cytochrome b, strain GMA-2.
2278-45168177 0.982- 0.000Balanion planctonicum isolate 07F40_59 small subunit ribosomal RNA gene, partial sequence.
2307-4260187190 0.999- 0.000Dexiostoma sp. UK_33b 23S ribosomal RNA gene, partial sequence.
2308-454617852160 0.846- 0.000Tetrahymena paravorax strain RP cytochrome oxidase subunit I (cox1) gene, partial cds; mitochondrial.
2309-2626539563 0.976- 0.000Tetrahymena vorax histone H3 (histone H3II) gene, 5' end; histone H4 (histone H4II) gene, 5' end.
2312-30227309927 0.709- 0.000Tetrahymena setosa strain HZ-1 cytochrome c oxidase subunit I (COI) gene, partial cds; mitochondrial.
2319-66507665 0.807- 0.000Gene for 25S ribosomal RNA in T. pigmentosa (with an intron not present in all Tetrahymena strains).
2320-887476 0.990- 0.000C.campylum 5.8S ribosomal RNA.
2327-710302417 0.968- 0.000Tetrahymena shanghaienisis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, complete sequence; and 5.8S ribosomal RNA gene, partial sequence.
2370-1818190190 1.000- 0.000Paramecium polycarum 23S ribosomal RNA gene, partial sequence.
2380-2575378428 0.916- 0.000Paramecium caudatum gene for cytosol-type hsp70, partial cds.
2387-44388388 1.000- 0.000Paramecium octaurelia macronuclear gene for ER-type hsp70, partial cds, strain:stock 137.
2394-18144423514 0.848- 0.000Paramecium caudatum 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence; macronuclear.
2403-1058349391 0.900- 0.000Paramecium tredecaurelia strain IKM large subunit ribosomal RNA gene, partial sequence.
2404-621208210 0.996- 0.000Paramecium tredecaurelia strain IKM 18S ribosomal RNA gene and internal transcribed spacer 1, partial sequence.
2407-1751498618 0.948- 0.000Paramecium primaurelia mitochondrial partial cytb gene for cytochrome b, strain PR-08.
2459-1220105105 1.000- 0.000Paramecium dodecaurelia histone H4 gene, partial cds.
2460-1065269269 1.000- 0.000Paramecium biaurelia strain 114 haem lyase (yegR) gene, partial cds; mitochondrial.
2461-1879444506 0.997- 0.000Paramecium septaurelia strain GFg-1 18S ribosomal RNA gene, partial sequence; macronuclear.
2462-1168345345 1.000- 0.000Paramecium octaurelia strain IEE orf189_2 gene, partial cds; mitochondrial.
2463-1475163168 1.000- 0.000Paramecium biaurelia strain UM2 NADH dehydrogenase subunit 3 gene, partial cds; mitochondrial.
2464-1674395395 1.000- 0.000Paramecium septaurelia strain V5-13 cytochrome oxidase subunit II gene, partial cds; mitochondrial.
2465-1477624627 1.000- 0.000Paramecium sonneborni strain AP59 5.8S ribosomal RNA and large subunit ribosomal RNA genes, partial sequence.
2466-1256433439 0.995- 0.000Paramecium octaurelia strain IEE hypothetical protein gene, partial cds; macronuclear.
2467-1447523523 1.000- 0.000Paramecium sexaurelia strain AZ8-4 ubiquitin-like 1 activating enzyme E1B gene, partial cds; macronuclear.
2468-1275323323 1.000- 0.000Paramecium sexaurelia strain 159 hypothetical protein gene, partial cds; macronuclear.
2469-1260419422 0.993- 0.000Paramecium tredecaurelia strain 209 serine carboxypeptidase gene, partial cds; macronuclear.
2470-1477367367 1.000- 0.000Paramecium sexaurelia strain 159 3-oxoadipate enol-lactonase gene, partial cds; macronuclear.
2471-1575439446 0.991- 0.000Paramecium undecaurelia strain 219 GrpE-like protein gene, partial cds; macronuclear.
2472-1052394398 0.992- 0.000Paramecium primaurelia strain 227 GTP-binding protein RAB2-like protein gene, partial cds; macronuclear.
2473-1476413416 0.997- 0.000Paramecium undecaurelia strain 219 tRNA methyltransferase gene, partial cds; macronuclear.
2474-1262492495 0.998- 0.000Paramecium undecaurelia strain 219 calcium binding protein gene, partial cds; macronuclear.
2475-1467420420 1.000- 0.000Paramecium octaurelia strain K8 DNA mismatch repair system Msh2 gene, partial cds; macronuclear.
2522-46497502 0.998- 0.000Urocentrum turbo clone 3 internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence.
2523-1217477593 0.860- 0.000Homalogastra setosa isolate GT1 clone C internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence.
2560-41014472124 0.766- 0.000Euplotes octocarinatus gamma-tubulin 2 micronuclear gene.
2595-24379892374 0.644- 0.000O.nova micronuclear MIC-ACT-1 gene, complete cds.
2596-1224150213 0.766- 0.000Euplotes eurystomus DNA for histone H4 gene.
2665-4522052506 0.941- 0.000Euplotes focardii heat-shock protein 70 (hsp70) gene, complete cds.
2691-713455468 0.987- 0.000Apokeronopsis bergeri clone QD050801-2 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence.
2696-35139351703 0.731- 0.000Onychodromus quadricornutus macronuclear partial 17S rRNA gene, 5.8S rRNA gene, partial 26S rRNA gene, internal transcribed spacer 1 (ITS1) and internal transcribed spacer 2 (ITS2).
2703-5718343205 0.702- 0.000Uroleptus sp. WJC-2003 alpha telomere binding protein (aTBP) gene, complete sequence; micronuclear.
2704-4516001633 0.992- 0.000Paraurostyla weissei eukaryotic release factor 1 (eRF1) gene, complete cds; macronuclear.
2776-4611061858 0.867- 0.000S.mytilis telomere-binding protein gene (beta subunit) for Sty43.
2854-411380390 0.994- 0.000Nyctotherus cordiformis (isolated from Rana temporaria) 5.8S rRNA gene and internal transcribed spacers.
2867-36363411846 0.799- 0.000Perkinsus marinus isolate FPMD-6 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1 and 5.8S ribosomal RNA gene, complete sequence; and 28S ribosomal RNA gene, partial sequence.
2868-61911467714 0.326- 0.000Perkinsus andrewsi 5S ribosomal RNA, small subunit ribosomal RNA genes, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and large subunit ribosomal RNA gene, complete sequence.
2892-9869681014 0.962- 0.000Perkinsus honshuensis isolate Mie3gH8_6 large subunit ribosomal RNA (LSU) gene, partial sequence.

  1 Maximum Alignment Density
  2 "Q" alignment comparison score between default Clustal W and Muscle alignments
  3 Level of resolution (consensus fork index) of the strict consensus tree built from the two bootstrap trees from Clustal W and Muscle alignments.
  4 Trees are unrooted majority rule consensus trees from 'fast bootstrap parsimony' algorithm in PAUP* 4.0 using default ClustalW alignments. Expect performance to deteriorate with low MAD or Q scores, large number of taxa, and high sequence divergence (largely owing to alignment problems). Only trees for (taxon) phylogenetically informative clusters with fewer than 1000 sequences are generated.


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