Cluster set at subtree whose root is 'Alveolata'

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Click here to see taxon by cluster Data Availability Matrix

Cluster ID	Parent cluster	TaxIDs	GIs	Lmin	Lmax	MAD1	Q2	Tcfi3	Defline of longest sequence	Tree4
1	-	65	158	630	1962	0.575	-	0.000	O.granulifera gene for alpha-tubulin.
2	-	50	119	743	2159	0.562	-	0.000	Gastrostyla steinii beta-tubulin gene, complete cds.
3	-	58	75	338	2464	0.351	-	0.000	Heterocapsa pygmaea minicircle PSII D1 reaction center protein (psbA2) gene, complete cds; chloroplast.
4	-	5	9	2244	3772	0.748	-	0.000	Protoceratium reticulatum 23S ribosomal RNA gene, complete sequence; chloroplast gene for chloroplast product.
7	-	17	18	975	1460	0.759	-	0.000	Ceratium horridum plastid PsbC mRNA, complete cds, minicircle mRNA encoding plastid protein.
8	-	11	12	820	1236	0.790	-	0.000	Gonyaulax polyedra photosystem II protein D2 (psbD) mRNA, complete cds; chloroplast.
9	-	3661	10517	128	8352	0.125	-	0.000	Cochlodinium polykrikoides strain CCPK06 external transcribed spacer, partial sequence; small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and large subunit ribosomal RNA gene, complete sequence; and external transcribed spacer, partial sequence.	-
10	-	12	17	477	705	0.855	-	0.000	Gymnodinium sp. USA29-9 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and 24S ribosomal RNA gene, partial sequence.
12	-	9	9	161	168	0.976	-	0.000	G. polyedra 24S rRNA divergent domain D8.
14	-	101	262	512	2418	0.358	-	0.000	Crypthecodinium cohnii mitochondrial DNA for cytochrome oxidase subunit I, partial cds.
19	-	4	19	333	366	0.932	-	0.000	Ostreopsis lenticularis internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence.
22	-	103	337	480	1771	0.551	-	0.000	Prorocentrum minimum isolate Pmactin1 actin mRNA, complete cds.
23	-	4	5	1126	1224	0.964	-	0.000	Katodinium rotundatum cytochrome oxidase subunit 1 (cox1) mRNA, partial cds; mitochondrial.
73	-	13	130	415	1057	0.757	-	0.000	Prorocentrum donghaiense proliferating cell nuclear antigen mRNA, complete cds.
74	-	8	8	996	1382	0.920	-	0.000	Peridiniopsis penardii chloroplast rbcL gene for ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial cds.
80	-	56	206	484	642	0.870	-	0.000	Peridinium aciculiferum isolate PAER-3 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence.
81	-	67	161	334	1543	0.547	-	0.000	Karlodinium micrum clone v cytochrome b-like gene, complete sequence; mitochondrial.
83	-	12	14	818	1568	0.688	-	0.000	Lepidodinium chlorophorum GapC1-p mRNA for glyceraldehyde-3-phosphate dehydrogenase, complete cds.
84	-	13	14	727	1211	0.740	-	0.000	Gonyaulax polyedra glyceraldehyde-3-phosphate dehydrogenase (GAPDH) mRNA, complete cds.
88	-	11	14	192	212	0.927	-	0.000	Scrippsiella rotunda strain SZN66 internal transcribed spacer 1, complete sequence.
90	-	5	8	195	206	0.973	-	0.000	Scrippsiella inulfa strain SZN62 internal transcribed spacer 2, complete sequence.
97	-	13	14	1324	2540	0.681	-	0.000	Crypthecodinium cohnii Hsp90 mRNA, complete cds.
115	-	6	29	676	822	0.900	-	0.000	Pfiesteria piscicida clone CCMP2423 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence.
155	-	15	69	530	668	0.896	-	0.000	Prorocentrum minimum strain PMDH01 18S small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S large subunit ribosomal RNA gene, partial sequence.
170	-	5	70	543	643	0.927	-	0.000	Prorocentrum lima genes for ITS1, 5.8S rRNA, ITS2, complete sequence, strain: Tahiti.
171	-	9	9	1642	1761	0.982	-	0.000	Prorocentrum lima 18S ribosomal RNA gene, partial sequence.
172	-	10	11	295	360	0.913	-	0.000	Eimeria acervulina RAPD-SCAR marker Ac-G02-360 genomic sequence.
177	-	4	4	438	618	0.852	-	0.000	Symbiodinium microadriaticum calmodulin (SMCaM1) mRNA, partial cds.
178	-	6	107	440	6900	0.183	-	0.000	Symbiodinium sp. ribulosebisphosphate carboxylase form II polyprotein precursor (rbcA) gene, partial cds.
204	-	4	8	484	1192	0.686	-	0.000	Karenia mikimotoi plastid psbA gene for photosystem II core 32 kDa protein, complete cds.
206	-	18	37	447	1508	0.807	-	0.000	Gymnodinium galatheanum small subunit ribosomal RNA gene, complete sequence; chloroplast gene for chloroplast product.
209	-	11	28	504	1064	0.663	-	0.000	Symbiodinium sp. G15 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
230	-	4	10	438	636	0.769	-	0.000	Amphidinium massartii voucher NEPCC 802 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence.
263	-	4	7	907	1928	0.774	-	0.000	Lepidodinium chlorophorum GapC1-fd mRNA for glyceraldehyde-3-phosphate dehydrogenase, complete cds.
283	-	5	17	365	671	0.891	-	0.000	Karlodinium micrum clone GgaITSC35 internal transcribed spacer 1, complete sequence; 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence.
285	-	8	8	943	1332	0.774	-	0.000	Symbiodinium sp. JCUCS-1 GapC3 mRNA for glyceraldehyde-3-phosphate dehydrogenase, partial cds.
304	-	6	15	552	673	0.903	-	0.000	Karenia mikimotoi voucher NEPCC 665 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence.
408	-	15	23	297	923	0.506	-	0.000	Karlodinium veneficum strain CCMP1975 clone 2 cytochrome b (cob) fragment genomic sequence.
423	-	7	9	2368	6762	0.692	-	0.000	Alexandrium tamarense luciferase gene, complete cds.
465	-	8	81	459	633	0.826	-	0.000	Alexandrium sp. gz 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
528	-	6	8	476	479	0.999	-	0.000	Alexandrium tamarense strain CCMP115 luciferase gene, partial cds.
537	-	26	158	595	1188	0.726	-	0.000	Sarcocystis cf. falcatula large subunit ribosomal RNA gene, partial sequence.
541	-	8	104	483	604	0.892	-	0.000	Alexandrium minutum voucher CS-323/08 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence.
596	-	6	14	427	626	0.881	-	0.000	Protoceratium reticulatum 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
637	-	4	5	633	988	0.861	-	0.000	Ceratium lineatum large subunit ribosomal RNA gene, partial sequence.
690	-	10	34	447	470	0.981	-	0.000	Gambierdiscus sp. C-4 genes for 18S rRNA, ITS1, 5.8S rRNA, ITS2, 28S rRNA, partial and complete sequence, clone: 2.
691	-	9	34	382	435	0.938	-	0.000	Gambierdiscus sp. A-5 genes for 18S rRNA, ITS1, 5.8S rRNA, ITS2, 28S rRNA, partial and complete sequence, clone: 5.
706	-	35	114	304	1116	0.542	-	0.000	Hematodinium sp. ex Carcinus maenas Cm887 isolate Cm887m2 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
709	-	4	4	301	303	0.998	-	0.000	Hematodinium sp. WJX-2006-1a internal transcribed spacer 1, partial sequence.
711	-	7	44	579	1838	0.543	-	0.000	Symbiodinium sp. RKT-203 clone 41 peridinin chlorophyll-a binding protein apoprotein precursor (pcp) genes, partial cds; nuclear genes for chloroplast products.
715	-	15	31	228	1868	0.508	-	0.000	Isotricha prostoma partial mRNA for Polyubiqutin 2 (polyubiqutin 2 gene).
718	-	27	112	294	770	0.670	-	0.000	Symbiodinium sp. clade D genes for 18S rRNA, ITS1, 5.8S rRNA, ITS2, 28S rRNA, partial and complete sequence, clone: Cc-19-07.
719	-	10	36	191	305	0.918	-	0.000	Symbiodinium sp. clade D isolate 08_WA-910d 5.8S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
728	-	46	119	321	708	0.851	-	0.000	Symbiodinium sp. clade D chloroplast partial 23S rRNA gene, isolate 542X.
764	-	5	5	529	529	1.000	-	0.000	Symbiodinium sp. HN8.2 gene for large subunit ribosomal RNA, partial sequence.
776	-	6	8	234	335	0.900	-	0.000	Symbiodinium sp. G4 ITS2, isolate G4.
822	-	4	10	208	273	0.931	-	0.000	Symbiodinium sp. ex Eunicea tourneforti isolate 681 9 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, complete sequence; and 5.8S ribosomal RNA gene, partial sequence.
900	-	6	96	758	811	0.996	-	0.000	Eimeria maxima strain ESS01 cytochrome c oxidase subunit I (COI) gene, partial cds; mitochondrial.
917	-	24	24	1131	1229	0.946	-	0.000	Caryospora sp. 23S ribosomal RNA gene, partial sequence; apicoplast gene for apicoplast product.
952	-	10	13	107	122	0.942	-	0.000	C.cohnii 5S ribosomal RNA.
982	-	10	11	998	1379	0.805	-	0.000	Eimeria arizonensis 16S ribosomal RNA gene, partial sequence; apicoplast gene for apicoplast product.
1026	-	10	10	702	705	0.997	-	0.000	Eimeria langebarteli ORF470 gene, partial cds; apicoplast.
1101	-	8	30	951	1863	0.547	-	0.000	Cyclospora cayetanensis heat shock protein 70 gene, partial cds.
1115	-	5	7	99	99	1.000	-	0.000	Sarcocystis muris myosin A mRNA, partial cds.
1116	-	5	5	99	99	1.000	-	0.000	Sarcocystis muris myosin B mRNA, partial cds.
1117	-	5	5	99	99	1.000	-	0.000	Sarcocystis muris myosin C mRNA, partial cds.
1118	-	4	4	99	99	1.000	-	0.000	Sarcocystis muris myosin E mRNA, partial cds.
1120	-	5	7	122	292	0.741	-	0.000	Sarcocystis hirsuta strain 08-01 18S ribosomal RNA gene, partial sequence.
1133	-	7	7	258	258	1.000	-	0.000	Isospora sp. iSAT1 cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial.
1134	-	4	4	261	277	0.969	-	0.000	small subunit rRNA {D/A-region and B-region} [Sarcocystis cruzi, rRNA Partial, 275 nt, segment 2 of 2].
1150	-	13	43	202	575	0.476	-	0.000	Sarcocystis neurona strain UCD-1 RAPD marker.
1154	-	6	43	353	1077	0.842	-	0.000	Sarcocystis falcatula strain Florida 1 18S ribosomal RNA partial sequence and internal transcribed spacer 1, complete sequence.
1155	-	6	7	411	503	0.949	-	0.000	Sarcocystis falcatula RNA polymerase beta subunit (rpoB) gene, partial cds.
1156	-	7	13	270	296	0.940	-	0.000	Sarcocystis neurona enolase 2 gene, partial cds.
1196	-	4	53	273	533	0.777	-	0.000	Hammondia hammondi 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, complete sequence; and 5.8S ribosomal RNA gene, partial sequence.
1205	-	6	10	232	451	0.694	-	0.000	Besnoitia akodoni 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, complete sequence; and 5.8S ribosomal RNA gene, partial sequence.
1215	-	31	117	290	3607	0.457	-	0.000	Cryptosporidium serpentis heat shock protein 70 (HSP70) gene, partial cds.
1216	-	37	91	292	1032	0.555	-	0.000	Cryptosporidium sp. 351 oocyst wall protein (OWP) gene, partial cds.
1219	-	53	121	217	507	0.708	-	0.000	Cryptosporidium sp. NJCF-2 heat shock protein 70 (HSP70) gene, partial cds.
1222	-	4	8	1017	1857	0.638	-	0.000	Cryptosporidium baileyi strain GBHN mitochondrial heat shock protein 60 gene, partial cds; nuclear gene for mitochondrial product.
1223	-	4	8	561	1008	0.668	-	0.000	Cryptosporidium baileyi strain ABHN mitochondrial alternative oxidase gene, partial cds; nuclear gene for mitochondrial product.
1230	-	4	14	176	348	0.673	-	0.000	Cryptosporidium hominis transmembrane adhesin (MIC1) gene, intron and partial cds.
1231	-	13	507	302	1343	0.549	-	0.000	Cryptosporidium hominis isolate MQ145 60 kDa glycoprotein (gp60) gene, gp60-Id allele, complete cds.
1233	-	4	24	133	257	0.538	-	0.000	Cryptosporidium meleagridis strain 1689 unknown gene, ds-RNA element, partial sequence.
1234	-	4	4	1374	1502	0.974	-	0.000	Cryptosporidium felis isolate 353 small dsRNA element, complete sequence.
1235	-	4	13	230	314	0.941	-	0.000	Cryptosporidium felis isolate cat234 heat shock protein 70 (hsp70) gene, partial cds.
1243	-	5	64	283	628	0.625	-	0.000	Cryptosporidium meleagridis isolate hhf10 beta-tubulin gene, partial cds.
1247	-	5	6	272	408	0.889	-	0.000	Cryptosporidium sp. LLX-2003 dihydrofolate reductase gene, partial cds.
1250	-	4	10	211	230	0.930	-	0.000	Cryptosporidium andersoni clone 14-13 18S ribosomal RNA gene, partial sequence.
1251	-	6	7	644	650	0.996	-	0.000	Cryptosporidium sp. cervine genotype isolate 11689 90 kDa heat shock protein (hsp90) gene, partial cds.
1259	-	4	100	247	1029	0.424	-	0.000	Hammondia heydorni isolate CZ-1 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
1270	-	4	4	394	404	0.988	-	0.000	Cystoisospora suis internal transcribed spacer 1, partial sequence.
1283	-	19	19	219	260	0.976	-	0.000	Cryptosporidium sp. cat324 18S ribosomal RNA gene, partial sequence.
1325	-	41	41	608	862	0.897	-	0.000	Monocystis sp. T2_03 18S rRNA gene (partial), ITS1, 5.8S rRNA gene, ITS2 and 28S rRNA gene (partial), clone T2_03.
1334	-	1415	1930	186	1655	0.352	-	0.000	Hepatocystis sp. IZ09 cytochrome b-like gene, complete sequence; mitochondrial.	-
1335	-	36	458	5529	6684	0.888	-	0.000	Leucocytozoon majoris mitochondrion, complete genome.
1337	-	16	81	235	864	0.493	-	0.000	Plasmodium lophurae 17S ribosomal RNA gene.
1339	-	4	9	556	594	0.955	-	0.000	Plasmodium chabaudi from Australia large subunit ribosomal RNA gene, partial sequence.
1340	-	94	112	884	1566	0.631	-	0.000	Plasmodium malariae from Burma cytochrome c oxidase subunit I (COX1) gene, complete cds; mitochondrial gene for mitochondrial product.
1341	-	119	144	316	1160	0.459	-	0.000	Leucocytozoon caulleryi apicoplast clpc gene for caseinolytic protease C, partial cds.
1342	-	44	49	166	206	0.924	-	0.000	Haemoproteus picae haplotype 1534 adenylosuccinate lyase (asl) gene, partial cds.
1343	-	8	63	5181	5790	0.929	-	0.000	Plasmodium coatneyi msp1 gene for merozoite surface protein-1, complete cds.
1344	-	26	39	650	1230	0.749	-	0.000	Plasmodium fieldi apicoplast tufA gene for elongation factor Tu, partial cds, strain: N3.
1345	-	11	19	1940	2192	0.950	-	0.000	Plasmodium gonderi clone 17 beta-tubulin (betatub) gene, partial cds.
1346	-	9	10	758	1080	0.770	-	0.000	Plasmodium knowlesi (clones pRV(20,21)) cell division cycle protein (cdc2) gene, intron.
1347	-	6	198	612	1858	0.609	-	0.000	Plasmodium hylobati merozoite surface protein 1 42 kDa fragment (mspI) gene, partial cds.
1348	-	11	15	935	1498	0.881	-	0.000	Plasmodium cynomolgi apicoplast gene for small subunit ribosomal RNA, partial sequence, strain: PtII.
1349	-	11	14	2652	2700	0.985	-	0.000	Plasmodium inui apicoplast gene for large subunit ribosomal RNA, partial sequence, strain: Celebes.
1350	-	11	12	1932	2298	0.866	-	0.000	Plasmodium fieldi apicoplast clpc gene for caseinolytic protease C, partial cds, strain: A.b.introlatus.
1351	-	4	8	8980	9336	0.977	-	0.000	Plasmodium fragile normocyte-binding protein 1 gene, complete cds.
1352	-	11	14	600	1393	0.828	-	0.000	Plasmodium brasilianum isolate Peru II glyceraldehyde-3-phosphate dehydrogenase gene, partial cds.
1355	-	40	77	210	236	0.987	-	0.000	Haemoproteus sp. GRW1 dihydrofolate reductase/thymidylate synthase (DHFR-TS) gene, partial cds.
1356	-	4	37	1618	1842	0.885	-	0.000	Plasmodium gallinaceum thrombospondin-related anonymous protein (TRAP) gene, partial cds.
1357	-	84	122	256	706	0.658	-	0.000	Leucocytozoon toddi isolate 120429885 cytochrome b gene, partial cds; mitochondrial.
1358	-	6	6	53	91	0.879	-	0.000	Plasmodium sp. INDC cytochrome b (cytb) gene, partial cds; mitochondrial.
1368	-	5	40	1827	2160	0.871	-	0.000	Plasmodium gallinaceum dihydrofolate reductase/thymidylate synthase (DHFR/TS) gene, complete cds.
1390	-	5	25	234	410	0.803	-	0.000	Plasmodium yoelii merozoite surface protein-1 gene, partial cds.
1391	-	5	13	5298	6409	0.855	-	0.000	P.chabaudi major merozoite surface antigen mRNA, complete cds.
1393	-	4	5	546	585	0.963	-	0.000	Plasmodium yoelii yoelii dihydrofolate reductase (DHFR) gene, partial cds.
1394	-	4	4	975	1009	0.990	-	0.000	Plasmodium vinckei vinckei (clones pRV(25,30)) cell division cycle protein (cdc2) gene, intron.
1408	-	7	17	824	1602	0.629	-	0.000	Plasmodium vinckei fructose 1,6-bisphosphate aldolase gene, partial cds.
1419	-	4	4	980	1097	0.932	-	0.000	Plasmodium yoelii yoelii GTP cyclohydrolase I (gtp-ch) gene, complete cds.
1422	-	8	13	642	1260	0.572	-	0.000	Plasmodium yoelii mRNA for 21 kDa ookinete surface protein, complete cds.
1425	-	13	20	602	987	0.652	-	0.000	Plasmodium vinckei lentum strain 194ZZ cysteine protease gene, partial cds.
1426	-	13	19	518	518	1.000	-	0.000	Plasmodium yoelii nigeriensis strain N67 dihydrofolate reductase gene, partial cds.
1427	-	13	19	549	649	0.978	-	0.000	Plasmodium yoelii killicki isolate 193L ORF470 gene, partial cds; apicoplast.
1429	-	4	5	2073	3140	0.797	-	0.000	Plasmodium cynomolgi heat shock protein 70 (hsp70) gene, complete cds.
1431	-	4	255	1504	2307	0.725	-	0.000	P.fragile apical membrane antigen 1 (AMA1/AG352) gene, complete cds.
1520	-	9	16	593	603	0.992	-	0.000	Haemoproteus sp. ex blue-necked tanager large subunit ribosomal RNA gene, partial sequence; plastid.
1522	-	4	32	387	701	0.843	-	0.000	Plasmodium ovale superoxide dismutase gene, partial cds.
1524	-	6	25	801	951	0.954	-	0.000	Plasmodium reichenowi ldh gene for lactate dehydrogenase, complete cds.
1529	-	5	5	1272	1395	0.945	-	0.000	Plasmodium vinckei lentum circumsporozoite protein (CS) gene, complete cds.
1531	-	7	12	489	815	0.633	-	0.000	Plasmodium yoelii nigeriensis isolate N67 RNA polymerase II (Rbp1) gene, partial cds.
1560	-	5	15	619	765	0.851	-	0.000	Plasmodium yoelii merozoite surface protein 4/5 (MSP4/5) gene, complete cds.
1623	-	5	12	1810	2926	0.795	-	0.000	Plasmodium yoelii yoelii pyebl gene for erythrocyte-binding-like protein, partial cds, strain: 33X(Pr3).
1754	-	16	38	998	2551	0.721	-	0.000	T.annulata 70 kD heat shock protein (hsp 70.1) gene, complete cds, clone hsp70.1.
1757	-	4	158	462	1062	0.783	-	0.000	Theileria parva 32 kDa surface antigen mRNA, complete cds.
1809	-	5	7	5847	6005	0.986	-	0.000	Babesia bigemina mitochondrial cox1, cox3, cob genes for cytochrome oxidase subunit I, cytochrome oxidase subunit III, cytochrome b, complete cds, and fragmented rRNA genes.
1830	-	37	93	763	1918	0.444	-	0.000	Theileria sergenti mRNA for Ts-32K protein, complete cds.
1831	-	6	22	601	684	0.923	-	0.000	Theileria sergenti isolate Jilin 23 kDa piroplasm surface protein gene, complete cds.
1879	-	7	9	412	412	1.000	-	0.000	Theileria sp. ex Miyazaki Sika Deer isolate 1 piroplasm major immunodominant protein gene, partial cds.
1909	-	4	6	364	460	0.961	-	0.000	Babesia caballi partial beta tubulin gene, exons 1-2.
1920	-	4	5	720	1182	0.815	-	0.000	Babesia bigemina cytochrome b gene, complete cds; mitochondrial.
2013	-	6	6	1796	2264	0.888	-	0.000	Babesia gibsoni CCTeta gene for eta subunit of chaperonin containing t-complex polypeptide 1, complete cds.
2025	-	5	29	935	1044	0.944	-	0.000	Babesia divergens 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
2036	-	5	11	333	333	1.000	-	0.000	Babesia sp. GoA3 heat shock protein 70 (hsp70) gene, partial cds.
2067	-	7	9	372	423	0.920	-	0.000	Babesia sp. FD1 5.8S ribosomal RNA gene and internal transcribed spacer 2, partial sequence.
2086	-	6	7	2166	2392	0.968	-	0.000	Babesia sp. BQ1/Lintan heat shock protein 90 (hsp90) mRNA, complete cds.
2096	-	27	29	344	629	0.622	-	0.000	Epidinium sp. gene for 28S ribosomal RNA (partial).
2097	-	12	12	84	115	0.916	-	0.000	Urostyla sp. ABT-1992 large subunit ribosomal RNA gene, internal domain.
2098	-	6	6	1224	1846	0.721	-	0.000	Telotrochidium henneguyii translation elongation factor 1-alpha (TEF1) gene, partial cds.
2107	-	4	10	150	267	0.744	-	0.000	B.japonicum H4 gene fragment, clone BjMH4-1.
2122	-	6	8	120	123	0.979	-	0.000	Euplotes aediculatus macronuclear 5S ribosomal RNA gene, partial sequence.
2158	-	21	21	318	409	0.908	-	0.000	Vorticella campanula 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, complete sequence; and 5.8S ribosomal RNA gene, partial sequence.
2161	-	7	7	189	190	0.998	-	0.000	Colpoda steinii 23S ribosomal RNA gene, D2 domain, partial sequence.
2277	-	4	30	547	618	0.893	-	0.000	Paramecium multimicronucleatum mitochondrial partial cytb gene for cytochrome b, strain GMA-2.
2278	-	4	5	168	177	0.982	-	0.000	Balanion planctonicum isolate 07F40_59 small subunit ribosomal RNA gene, partial sequence.
2307	-	42	60	187	190	0.999	-	0.000	Dexiostoma sp. UK_33b 23S ribosomal RNA gene, partial sequence.
2308	-	45	46	1785	2160	0.846	-	0.000	Tetrahymena paravorax strain RP cytochrome oxidase subunit I (cox1) gene, partial cds; mitochondrial.
2309	-	26	26	539	563	0.976	-	0.000	Tetrahymena vorax histone H3 (histone H3II) gene, 5' end; histone H4 (histone H4II) gene, 5' end.
2312	-	30	227	309	927	0.709	-	0.000	Tetrahymena setosa strain HZ-1 cytochrome c oxidase subunit I (COI) gene, partial cds; mitochondrial.
2319	-	6	6	507	665	0.807	-	0.000	Gene for 25S ribosomal RNA in T. pigmentosa (with an intron not present in all Tetrahymena strains).
2320	-	8	8	74	76	0.990	-	0.000	C.campylum 5.8S ribosomal RNA.
2327	-	7	10	302	417	0.968	-	0.000	Tetrahymena shanghaienisis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, complete sequence; and 5.8S ribosomal RNA gene, partial sequence.
2370	-	18	18	190	190	1.000	-	0.000	Paramecium polycarum 23S ribosomal RNA gene, partial sequence.
2380	-	25	75	378	428	0.916	-	0.000	Paramecium caudatum gene for cytosol-type hsp70, partial cds.
2387	-	4	4	388	388	1.000	-	0.000	Paramecium octaurelia macronuclear gene for ER-type hsp70, partial cds, strain:stock 137.
2394	-	18	144	423	514	0.848	-	0.000	Paramecium caudatum 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence; macronuclear.
2403	-	10	58	349	391	0.900	-	0.000	Paramecium tredecaurelia strain IKM large subunit ribosomal RNA gene, partial sequence.
2404	-	6	21	208	210	0.996	-	0.000	Paramecium tredecaurelia strain IKM 18S ribosomal RNA gene and internal transcribed spacer 1, partial sequence.
2407	-	17	51	498	618	0.948	-	0.000	Paramecium primaurelia mitochondrial partial cytb gene for cytochrome b, strain PR-08.
2459	-	12	20	105	105	1.000	-	0.000	Paramecium dodecaurelia histone H4 gene, partial cds.
2460	-	10	65	269	269	1.000	-	0.000	Paramecium biaurelia strain 114 haem lyase (yegR) gene, partial cds; mitochondrial.
2461	-	18	79	444	506	0.997	-	0.000	Paramecium septaurelia strain GFg-1 18S ribosomal RNA gene, partial sequence; macronuclear.
2462	-	11	68	345	345	1.000	-	0.000	Paramecium octaurelia strain IEE orf189_2 gene, partial cds; mitochondrial.
2463	-	14	75	163	168	1.000	-	0.000	Paramecium biaurelia strain UM2 NADH dehydrogenase subunit 3 gene, partial cds; mitochondrial.
2464	-	16	74	395	395	1.000	-	0.000	Paramecium septaurelia strain V5-13 cytochrome oxidase subunit II gene, partial cds; mitochondrial.
2465	-	14	77	624	627	1.000	-	0.000	Paramecium sonneborni strain AP59 5.8S ribosomal RNA and large subunit ribosomal RNA genes, partial sequence.
2466	-	12	56	433	439	0.995	-	0.000	Paramecium octaurelia strain IEE hypothetical protein gene, partial cds; macronuclear.
2467	-	14	47	523	523	1.000	-	0.000	Paramecium sexaurelia strain AZ8-4 ubiquitin-like 1 activating enzyme E1B gene, partial cds; macronuclear.
2468	-	12	75	323	323	1.000	-	0.000	Paramecium sexaurelia strain 159 hypothetical protein gene, partial cds; macronuclear.
2469	-	12	60	419	422	0.993	-	0.000	Paramecium tredecaurelia strain 209 serine carboxypeptidase gene, partial cds; macronuclear.
2470	-	14	77	367	367	1.000	-	0.000	Paramecium sexaurelia strain 159 3-oxoadipate enol-lactonase gene, partial cds; macronuclear.
2471	-	15	75	439	446	0.991	-	0.000	Paramecium undecaurelia strain 219 GrpE-like protein gene, partial cds; macronuclear.
2472	-	10	52	394	398	0.992	-	0.000	Paramecium primaurelia strain 227 GTP-binding protein RAB2-like protein gene, partial cds; macronuclear.
2473	-	14	76	413	416	0.997	-	0.000	Paramecium undecaurelia strain 219 tRNA methyltransferase gene, partial cds; macronuclear.
2474	-	12	62	492	495	0.998	-	0.000	Paramecium undecaurelia strain 219 calcium binding protein gene, partial cds; macronuclear.
2475	-	14	67	420	420	1.000	-	0.000	Paramecium octaurelia strain K8 DNA mismatch repair system Msh2 gene, partial cds; macronuclear.
2522	-	4	6	497	502	0.998	-	0.000	Urocentrum turbo clone 3 internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence.
2523	-	12	17	477	593	0.860	-	0.000	Homalogastra setosa isolate GT1 clone C internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence.
2560	-	4	10	1447	2124	0.766	-	0.000	Euplotes octocarinatus gamma-tubulin 2 micronuclear gene.
2595	-	24	37	989	2374	0.644	-	0.000	O.nova micronuclear MIC-ACT-1 gene, complete cds.
2596	-	12	24	150	213	0.766	-	0.000	Euplotes eurystomus DNA for histone H4 gene.
2665	-	4	5	2205	2506	0.941	-	0.000	Euplotes focardii heat-shock protein 70 (hsp70) gene, complete cds.
2691	-	7	13	455	468	0.987	-	0.000	Apokeronopsis bergeri clone QD050801-2 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence.
2696	-	35	139	351	703	0.731	-	0.000	Onychodromus quadricornutus macronuclear partial 17S rRNA gene, 5.8S rRNA gene, partial 26S rRNA gene, internal transcribed spacer 1 (ITS1) and internal transcribed spacer 2 (ITS2).
2703	-	5	7	1834	3205	0.702	-	0.000	Uroleptus sp. WJC-2003 alpha telomere binding protein (aTBP) gene, complete sequence; micronuclear.
2704	-	4	5	1600	1633	0.992	-	0.000	Paraurostyla weissei eukaryotic release factor 1 (eRF1) gene, complete cds; macronuclear.
2776	-	4	6	1106	1858	0.867	-	0.000	S.mytilis telomere-binding protein gene (beta subunit) for Sty43.
2854	-	4	11	380	390	0.994	-	0.000	Nyctotherus cordiformis (isolated from Rana temporaria) 5.8S rRNA gene and internal transcribed spacers.
2867	-	36	363	411	846	0.799	-	0.000	Perkinsus marinus isolate FPMD-6 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1 and 5.8S ribosomal RNA gene, complete sequence; and 28S ribosomal RNA gene, partial sequence.
2868	-	6	19	1146	7714	0.326	-	0.000	Perkinsus andrewsi 5S ribosomal RNA, small subunit ribosomal RNA genes, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and large subunit ribosomal RNA gene, complete sequence.
2892	-	9	86	968	1014	0.962	-	0.000	Perkinsus honshuensis isolate Mie3gH8_6 large subunit ribosomal RNA (LSU) gene, partial sequence.

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  ¹ Maximum Alignment Density
  ² "Q" alignment comparison score between default Clustal W and Muscle alignments
  ³ Level of resolution (consensus fork index) of the strict consensus tree built from the two bootstrap trees from Clustal W and Muscle alignments.
  ⁴ Trees are unrooted majority rule consensus trees from 'fast bootstrap parsimony' algorithm in PAUP* 4.0 using default ClustalW alignments. Expect performance to deteriorate with low MAD or Q scores, large number of taxa, and high sequence divergence (largely owing to alignment problems). Only trees for (taxon) phylogenetically informative clusters with fewer than 1000 sequences are generated.

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