Cluster set at subtree whose root is 'stramenopiles'

Click here to see taxon by cluster Data Availability Matrix
Cluster IDParent clusterTaxIDsGIsLminLmaxMAD1Q2Tcfi3Defline of longest sequenceTree4
2-154326632433768 0.423- 0.000Stephanodiscus hantzschii isolate UTCC 267 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.-
5-1501903461851 0.614- 0.000Fibrocapsa japonica strain CCMP 1661 16S ribosomal RNA gene, partial sequence; chloroplast.
7-11912420414238 0.706- 0.000Vacuolaria virescens internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S large subunit ribosomal RNA gene, complete sequence.
17-871033341991 0.462- 0.000Saccharina japonica beta-actin mRNA, complete cds.
18-46737782263 0.504- 0.000Phytophthora cinnamomi tub1 gene for alpha-tubulin, strain Pr120.
19-3127483162379 0.404- 0.000Ectocarpus variabilis beta-tubulin mRNA, complete cds.
23-101423701333339 0.336- 0.000Detonula confervacea chloroplast genes for ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit and small subunit, complete cds.-
24-2193163981320 0.602- 0.000Laminaria digitata large subunit ribosomal RNA gene, partial sequence.
25-12423110892385 0.723- 0.000Achlya ambisexualis isolate JS854 heat shock protein Hsp90 mRNA, complete cds.
26-1222462171302 0.672- 0.000B.filiformis (Vischer) psbA gene.
27-44432552 0.894- 0.000Ochromonas ovalis silicic acid transport protein (SIT) gene, partial cds.
31-55727754 0.980- 0.000Spumella-like flagellate 199hm 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
32-44607672 0.965- 0.000Spumella-like flagellate Got220 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
34-44835846 0.994- 0.000Spumella-like flagellate JBNZ41 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
38-2383677152016 0.676- 0.000Asterosiphon dichotomus chloroplast partial psaA gene for photosystem I P700 apoprotein A1.
45-624338816 0.756- 0.000Cylindrotheca fusiformis fucoxanthin chlorophyll a/c-binding protein precursor (cffcpA-1A) mRNA, partial cds.
54-22276161230 0.691- 0.000Cyclotella meneghiniana chloroplast protein synthesis elongation factor Tu (tufA) gene, chloroplast gene encoding chloroplast protein, complete cds.
61-55138164 0.963- 0.000Asterionella glacialis ribosomal RNA large subunit, domains D7 and C8.
63-79432533 0.946- 0.000Aulacoseira subarctica ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit (rbcL) and ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit (rbcS) genes, partial cds; chloroplast genes for chloroplast products.
64-1720368408 0.985- 0.000Padina sp. 00663 23S ribosomal RNA gene, partial sequence; plastid.
65-26211274051299 0.549- 0.000Phytophthora pseudotsugae cytochrome oxidase I gene, partial cds; mitochondrial gene for mitochondrial product.-
67-901199411252 0.928- 0.000Cyclotella distinguenda strain Tiplady PSbC (psbC) gene, partial cds.
85-30314112681614 0.413- 0.000Pseudo-nitzschia delicatissima strain 14V 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.-
88-1220363417 0.975- 0.000Thalassiosira weissflogii CCMP1010 clone 1F silicon transporter (SIT) gene, partial cds.
91-45918431587 0.577- 0.000Thalassiosira pseudonana strain CCMP1335 silicon transporter (SIT2) mRNA, complete cds.
92-1016350795 0.859- 0.000Thalassiosira oceanica strain CCMP 1004 clone 1 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
144-44393740 0.877- 0.000Asterionellopsis glacialis nitrate reductase mRNA, partial cds.
158-9912521306 0.992- 0.000Achnanthes kuwaitensis EFL mRNA for elongation factor-like, partial cds.
161-617586819 0.883- 0.000Thalassiosira weissflogii chitin synthase 7 gene, partial cds.
166-719585676 0.905- 0.000Thalassiosira oceanica chitin synthase 9 gene, partial cds.
170-45586586 1.000- 0.000Chaetoceros socialis chitin synthase 1 gene, partial cds.
183-55871892 0.993- 0.000Chattonella marina var. ovata chromoplast psbD gene for photosystem II D2 protein, partial cds.
203-6612381401 0.964- 0.000Detonula confervacea MATX mRNA for methionine S-adenosyl transferase, complete cds.
218-89675889 0.898- 0.000Chaetoceros sp. CCK09 genes for SSU rRNA, ITS1, 5.8S rRNA, ITS2, LSU rRNA, partial and complete sequence.
275-66125143 0.939- 0.000Fragilariopsis kerguelensis small subunit ribosomal RNA gene, partial sequence.
307-55283287 0.994- 0.000Pseudo-nitzschia granii strain UWOSP36 ferritin (FTN) gene, partial cds.
366-55398551 0.870- 0.000Achnanthes exigua silicic acid transport protein gene, partial cds.
373-68118118 1.000- 0.000Eisenia bicyclis 5S ribosomal RNA.
393-61913602012547 0.389- 0.000Pythium polymastum strain CBS 811.70 internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence.-
400-2697001911051 0.571- 0.000Phytophthora cryptogea cytochrome c oxidase subunit 2 (cox2) gene, partial cds; orf32 gene, complete cds; and cytochrome c oxidase subunit 1 (cox1) gene, partial cds; mitochondrial.
401-254591325791 0.861- 0.000Achlya primoachlya strain F-1532 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
416-1714704411540 0.601- 0.000Phytophthora parasitica isolate 149 translation elongation factor 1 alpha (Tef1) mRNA, complete cds.
419-7106221370 0.698- 0.000Aphanomyces astaci isolate FDL I 457 28S ribosomal RNA gene, partial sequence.
420-58226226 1.000- 0.000Saprolegnia diclina isolate TF27 18S ribosomal RNA gene, partial sequence.
423-1244253681074 0.727- 0.000Pythium aphanidermatum strain M 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
503-512423437 0.975- 0.000Aphanomyces frigidophilus strain NJM 9665 putative endochitinase (CHI1) gene, partial cds.
516-7581671834 0.934- 0.000Phytophthora megasperma large subunit ribosomal RNA gene, partial sequence.
518-137193518877 0.947- 0.000Phytophthora hydropathica isolate 5D1 beta-NADH dehydrogenase subunit 1 (NAD1) gene, partial cds; mitochondrial.
521-1027275428 0.923- 0.000Paraperonospora leptosperma voucher H. Voglmayr H.V.193 (WU) 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, complete sequence; and 5.8S ribosomal RNA gene, partial sequence.
522-163113082888 0.606- 0.000Phytophthora megasperma ATP synthase subunit 9 (atp9), NADH dehydrogenase, and cytochrome b (cob) genes, complete cds; and unknown gene; mitochondrial genes for mitochondrial products.
550-55350851902337 0.346- 0.000Plasmopara viticola internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence.-
551-1425209251 0.903- 0.00018S rRNA, 5.8S rRNA {ITS I, internal transcribed spacer regions between 18S and 5.8S rRNA} [Phytophthora megakarya, Genomic, 251 nt].
578-4419742061 0.982- 0.000Hyaloperonospora parasitica MAP kinase gene, complete cds.
594-1826388388 1.000- 0.000Phytophthora syringae strain PDR115773A NADH dehydrogenase subunit 5 (nad5) gene, partial cds; mitochondrial.
595-23138212599 0.664- 0.000Phytophthora fragariae var. fragariae clone PFF309b acidic elicitin (AE2) mRNA, complete cds.
597-2730387459 0.907- 0.000Phytophthora nemorosa strain P-13 cytochrome oxidase subunit II (CoxII) gene, partial cds; CoxII-CoxI intergenic spacer, complete sequence; and cytochrome oxidase subunit I (CoxI) gene, partial cds; mitochondrial.
598-1818322414 0.828- 0.000Mitochondrion P.parasitica (Dastur 1896) DNA for autonomous replication in yeast.
599-2424250290 0.919- 0.000Phytophthora katsurae strain SCRP388 tRNA-Gly (trnG) gene, partial sequence; tRNA-Gly (trnG) gene, complete sequence; and tRNA-Tyr (trnY) gene, partial sequence; mitochondrial.
600-2424382442 0.951- 0.000Phytophthora inundata strain IMI389751 intergenic spacer region 2, partial sequence.
602-1424246372 0.907- 0.000Phytophthora citricola strain SCRP130 clone I9-10(P6) SSR marker sequence.
603-1212328499 0.881- 0.000Phytophthora cambivora strain IMI296831 S29-30(P3) SSR marker sequence.
606-109225475496 1.000- 0.000Pythium vexans isolate PD_00391(P3980) ribosomal protein L10 gene, partial cds.
607-971967531515 0.767- 0.000Phytophthora palmivora enolase gene, partial cds.
608-971488002448 0.651- 0.000Phytophthora sp. ohioensis isolate ST18-37 triosephosphate isomerase/glyceraldehyde-3-phosphate dehydrogenase gene, partial cds.
651-2867294377 0.974- 0.000Phytophthora cactorum strain 1235 clone 2 gypsy-like retrotransposon, partial sequence.
658-1523295559 0.724- 0.000Phytophthora quercina strain SCRP547 tRNA-Tyr (trnY) and small subunit ribosomal RNA (rns) genes, partial sequence; mitochondrial.
659-59289508 0.806- 0.000Phytophthora cryptogea ras-like protein gene, partial cds.
665-55515688 0.854- 0.000Phytophthora brassicae elicitin-like protein (Bra5) mRNA, complete cds.
676-411168221 0.863- 0.000Phytophthora citricola clone 2 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, complete sequence; and 5.8S ribosomal RNA gene, partial sequence.
678-616495679 0.906- 0.000Phytophthora citricola strain BR519 elicitin-like protein 6 precursor (cit6) mRNA, partial cds.
724-711227229 0.998- 0.000Phytophthora citricola isolate p33 ras-related protein Ypt1 (ypt1) gene, intron 1.
742-42116882334 0.766- 0.000Phytophthora erythroseptica clone MO52 glucose-6-phosphate isomerase (GPI) gene, complete cds.
746-719760881 0.897- 0.000Pythium undulatum 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
747-639394411 0.984- 0.000Phytophthora alni subsp. uniformis isolate PAU89 clone d10 anti-silencing factor gene, partial sequence.
748-626294295 0.999- 0.000Phytophthora alni subsp. alni isolate PAA162 clone d1 G-protein alpha subunit (GPA1) gene, partial cds.
749-32106314664 0.736- 0.000Phytophthora alni subsp. uniformis isolate CLM19 Ras-related protein gene, partial sequence.
750-1053538807 0.953- 0.000Phytophthora lateralis isolate PL-0X-001 indole-3-glycerol-phosphate synthase N-5'-phosphoribosyl anthranilate isomerase (trp1) gene, partial sequence.
751-1111427564 0.940- 0.000Phytophthora quercina strain SCRP541 clone I13-14(P26) SSR marker sequence.
753-59529716 0.927- 0.000Phytophthora quercina strain SCRP541 clone S23-25(P26) SSR marker sequence.
754-46456516 0.909- 0.000Phytophthora cambivora strain IMI296831 S21-22(P3) SSR marker sequence.
755-613225515 0.720- 0.000Phytophthora alni subsp. alni microsatellite S44-45 sequence.
757-99520587 0.959- 0.000Phytophthora ilicis strain SCRP377 clone S4-5(P29) SSR marker sequence.
758-55705809 0.952- 0.000Phytophthora lateralis strain IMI040503 R16-17(P16) SSR marker sequence.
759-55291633 0.826- 0.000Phytophthora europaea strain SCRP622 clone R10-11(P11) SSR marker sequence.
761-44332385 0.916- 0.000Phytophthora rubi microsatellite S58-59 sequence.
764-44308371 0.934- 0.000Phytophthora rubi microsatellite P76-77 sequence.
765-55248305 0.901- 0.000Phytophthora europaea microsatellite P72-73 sequence.
766-44201260 0.890- 0.000Phytophthora rubi microsatellite P70-71 sequence.
767-55266450 0.877- 0.000Phytophthora europaea microsatellite S68-69 sequence.
768-44490531 0.954- 0.000Phytophthora rubi microsatellite S64-65 sequence.
769-55217292 0.869- 0.000Phytophthora rubi microsatellite S38-39 sequence.
810-761454841 0.892- 0.000Pythium helicoides internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence.
813-1038213246 0.961- 0.000Phytophthora vignae f. sp. adzukicola genes for ITS1, 5.8S rRNA, complete and partial sequence, isolate: Pv-ngn2.
814-48428451 0.986- 0.000Phytophthora gonapodyides isolate UASWS0191 SCAR marker F4-1050 genomic sequence.
815-55243264 0.967- 0.000Phytophthora nemorosa strain SCRP910 clone I11-12(P19) SSR marker sequence.
816-44365386 0.969- 0.000Phytophthora psychrophila strain SCRP630 clone S31-28(P25) SSR marker sequence.
817-55799842 0.977- 0.000Phytophthora inundata strain IMI389751 S1-3(P14) SSR marker sequence.
818-55682876 0.894- 0.000Phytophthora ilicis strain SCRP377 clone R4-5(P29) SSR marker sequence.
819-77491612 0.903- 0.000Phytophthora rubi strain IMI355974 R13-14(P31) SSR marker sequence.
824-810609859 0.925- 0.000Phytophthora psychrophila strain SCRP630 clone I5-6(P25) SSR marker sequence.
825-44361364 0.996- 0.000Phytophthora pseudosyringae strain IMI390500 S23-37(P24) SSR marker sequence.
827-44620656 0.978- 0.000Phytophthora psychrophila strain SCRP630 clone R7-9(P25) SSR marker sequence.
848-428384387 1.000- 0.000Phytophthora foliorum isolate P-04-001 putative effector protein Avh120 gene, complete cds.
850-436637745 0.917- 0.000Phytophthora lateralis isolate PL-0X-001 gwEuk.30.30.1 gene, partial sequence; and microsatellite Pr9C3 sequence.
851-7259351167 0.900- 0.000Phytophthora ipomoeae isolate Pic99165 ATP synthase F1 subunit alpha gene, partial cds; tRNA-Glu gene, complete sequence; and NADH dehydrogenase subunit 4 gene, partial cds; mitochondrial.
852-26216224289 0.800- 0.000Phytophthora andina culture-collection CIP:EC3561 ras-related protein (ypt) gene, exon 2 and partial cds.
857-44558663 0.887- 0.000Phytophthora alni subsp. alni strain SCRP2 clone S19-20(P1) SSR marker sequence.
919-818595687 0.931- 0.000Haliphthoros milfordensis genes for 18S rRNA, ITS1, 5.8S rRNA, ITS2, 28S rRNA, partial and complete sequence, strain: ATCC MY-3264 (= NJM 0131).
922-2737121250 0.793- 0.000Pythium catenulatum isolate 17F1 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, complete sequence; and 5.8S ribosomal RNA gene, partial sequence.
930-841522818 0.962- 0.000Pythium sp. 66 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
931-1925824965 0.923- 0.000Pythium sp. F-1550.7 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
937-44645813 0.845- 0.000Pythium aphanidermatum 25 kDa protein elicitor (SD21-1) mRNA, complete cds.
963-414964993 0.987- 0.000Pythium rostratifingens strain PPRI8600 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence.
968-55272284 0.982- 0.000Pythium ornacarpum 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, complete sequence; and 5.8S ribosomal RNA gene, partial sequence.
999-61410401096 0.975- 0.000Pythium jasmonium CBS 101876 small ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and large ribosomal RNA gene, partial sequence.
1014-618855855 1.000- 0.000Pythium sp. UASWS STEU6208 NADH dehydrogenase subunit 1 gene, partial cds; mitochondrial.
1020-573799850 0.984- 0.000Albugo candida voucher VPRI 41228 internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
1033-5511101135 0.990- 0.000Nannochloropsis salina strain MBIC10063 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
1046-23152412613 0.902- 0.000Blastocystis sp. OSU25 18S small subunit ribosomal RNA gene, partial sequence.
1077-1136493578 0.948- 0.000Synura petersenii strain CCMP 863 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and 26S ribosomal RNA gene, partial sequence.
1084-6812421821 0.936- 0.000Pirsonia guinardiae partial 18S rRNA gene, isolate P844.
1139-650530665 0.928- 0.000Chattonella marina var. ovata genes for 18S rRNA, ITS1, 5.8S rRNA, ITS2, 28S rRNA, partial and complete sequence, country: Japan:Bisan Seto.
1174-66558638 0.969- 0.000Heterosigma akashiwo strain CCMP 452 16S ribosomal RNA gene, partial sequence; chloroplast.
1206-424939939 1.000- 0.000Chattonella marina var. antiqua mitochondrial cox2, cox1 genes for cytochrome c oxidase subunit 2, cytochrome c oxidase subunit 1, partial cds, strain: NIES558.
1208-42228285665 0.717- 0.000Chattonella marina mitochondrial cox1 gene for cytochrome c oxidase subunit 1, partial cds, strain: KA-11-m-1.
1235-69195229 0.929- 0.000Opalina sp. Rs1 gene for 18S ribosomal RNA, partial sequence.
1262-44210219 0.979- 0.000Tribonema aequale tRNA-Leu (trnL) gene, intron; chloroplast.
1291-89315276792 0.676- 0.000Cutleria cylindrica mitochondrial cox3 gene for cytochrome oxidase subunit 3 and hypothetical protein gene, partial cds, haplotype: H.
1292-3033498753 0.933- 0.000Dilophus fastigiatus voucher D96 NADH dehydrogenase subunit 1 (nad1) gene, partial cds; mitochondrial.
1294-717417703 0.658- 0.000Ectocarpus sp. Ec714 mitochondrial partial rps14 gene for ribosomal protein S14, strain Ec714.
1303-5915961611 0.996- 0.000Ectocarpus fasciculatus mitochondrial cox2 gene (partial) for cytochrome oxidase 2 and nad4 gene (partial) for NADH dehydrogenase subunit 4, strain EcfasRos2631G124_f.
1304-1216423798 0.925- 0.000Ectocarpus fasciculatus mitochondrial partial cox2 gene for cytochrome oxidase 2, strain Ec541.
1305-1313118118 1.000- 0.000Colpomenia bullosa chloroplast rbcS gene, partial cds.
1306-222504361919 0.508- 0.000Ectocarpus crouaniorum 18S rRNA gene (partial), ITS1, 5.8S rRNA gene, ITS2 and 25S rRNA gene (partial), strain Ec496.
1308-596179342 0.735- 0.000Petalonia fascia isolate B009 5.8S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
1324-12517651170 0.805- 0.000Chordaria chordaeformis genes for ITS1, 5.8S rRNA, ITS2, partial and comlete sequence, strain:Spitsbergen_6.
1325-2424138228 0.837- 0.000Bachelotia antillarum partial small subunit rRNA gene.
1326-242478201 0.779- 0.000Chordaria flagelliformis partial small subunit rRNA gene.
1329-56288329 0.947- 0.000Gononema pectinatum ITS2 DNA.
1333-5134711226 0.538- 0.000Laminariocolax tomentosoides 5.8S rRNA gene and ITS1 and ITS2 DNA.
1338-44768770 0.998- 0.000Chordaria sp. Kamchatka_4 DNA, 26S rRNA, IGS, 5S rRNA, partial and complete sequence.
1344-58210387 0.776- 0.000Microspongium alariae ITS1, and partial 5.8S rRNA gene, 387BP.
1384-39539361113 0.972- 0.000Pelagophycus porra NADH dehydrogenase subunit 6 gene, complete cds; mitochondrial.
1385-918140195 0.964- 0.000Alaria esculenta isolate Ae1 ribosomal protein S3 (rps3) and ribosomal protein S19 (rps19) genes, partial cds; mitochondrial.
1386-1265119245 0.725- 0.000Macrocystis pyrifera Mp1 ATPase subunit 8 (atp8) gene, partial cds; atp8-trnS intergenic spacer, complete sequence; and tRNA-Ser (trnS) gene, partial sequence; mitochondrial.
1387-1126234350 0.895- 0.000Alaria esculenta Ae2 ribosomal protein L31 (rpl31) gene, partial cds; rpl31-rns intergenic spacer, complete sequence; and 16S ribosomal RNA (rns) gene, partial sequence; mitochondrial.
1388-1020143206 0.942- 0.000Laminaria ochroleuca Lo2 tRNA-Pro (trnP) gene, partial sequence; trnP-rnl intergenic spacer, complete sequence; and 23S ribosomal RNA (rnl) gene, partial sequence; mitochondrial.
1389-1260155438 0.743- 0.000Undaria pinnatifida mitochondrial tatC gene, tRNA-Trp, tRNA-Ile, tRNA-Gln, partial cds, haplotype: 11, 33.
1390-683586041014 0.758- 0.000Macrocystis sp. 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 26S ribosomal RNA gene, partial sequence.
1395-31143231456 0.627- 0.000Macrocystis pyrifera internal transcribed spacer 1, complete sequence, and 18S and 5.8S ribosomal RNA genes, partial sequences.
1423-2384228350 0.785- 0.000Undaria pinnatifida genes for 5.8S rRNA, ITS2, 26S rRNA, partial and complete sequence, clone: CDP3b.
1485-450372384 0.985- 0.000Macrocystis pyrifera clone TasmaniaA internal transcribed spacer 2, complete sequence.
1503-1582111254 0.919- 0.000Laminaria religiosa DNA, 5S rRNA intergenic spacer, partial sequence, country: Japan: Hokkaido, Otobe, Genna, isolate: Sample No.1.
1562-55337424 0.881- 0.000Silvetia babingtonii DNA, ITS2 region.
1572-10125336624 0.798- 0.000Fucus distichus haplotype 2 23S ribosomal RNA gene and 23S ribosomal RNA-tRNA-Val intergenic spacer, partial sequence; mitochondrial.
1573-711373373 1.000- 0.000Fucus spiralis haplotype 1 23S ribosomal RNA gene, partial sequence; mitochondrial.
1574-171456871230 0.854- 0.000Hesperophycus californicus isolate 3 clone 2 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 26S ribosomal RNA gene, partial sequence.
1607-742433371542 0.412- 0.000Sargassum hemiphyllum internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence.
1615-48203265 0.967- 0.000Fucus ceranoides Fc2 tRNA-Trp (trnW) gene, partial sequence; trnW-tnrI intergenic spacer, complete sequence; and tRNA-Ile (trnI) gene, partial sequence; mitochondrial.
1627-410678678 1.000- 0.000Fucus ceranoides haplotype h2 orf501 gene, partial cds; and petA-psaJ intergenic spacer, partial sequence; chloroplast.
1628-422733744 0.991- 0.000Fucus serratus haplotype S1 putative disulfide isomerase gene, partial cds.
1703-713239242 0.991- 0.000Turbinaria turbinata isolate Tt tRNA-Trp gene, partial sequence; trnW-trnI intergenic spacer, complete sequence; and tRNA-Ile gene, partial sequence; mitochondrial.
1705-63112431258 0.994- 0.000Cystoseira osmundacea f. hipolito biotype San Hipolito Bay 2, Baja California South 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1 and 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence.
1720-49135195 0.881- 0.000Stypocaulon scoparium chloroplast rbcL gene, spacer sequence, SGAD-130 (94-1).
1724-67190190 1.000- 0.000Sphacelaria nana chloroplast partial rbcL gene for ribulose 1,5-bisphosphate carboxylase/oxygenase large subunit, SGAD-169 (67-82-2).
1734-1729197276 0.901- 0.000Sphacelaria californica chloroplast rbcL gene, spacer sequence, SGAD-101 (93-6-2).
1742-2232179283 0.818- 0.000A.villosa internal transcribed spacer 1 DNA.
1743-2232299358 0.914- 0.000D.anceps internal transcribed spacer 2 DNA.
1744-66193232 0.891- 0.000Desmarestia aculeata chloroplast rbcL gene, spacer sequence.

  1 Maximum Alignment Density
  2 "Q" alignment comparison score between default Clustal W and Muscle alignments
  3 Level of resolution (consensus fork index) of the strict consensus tree built from the two bootstrap trees from Clustal W and Muscle alignments.
  4 Trees are unrooted majority rule consensus trees from 'fast bootstrap parsimony' algorithm in PAUP* 4.0 using default ClustalW alignments. Expect performance to deteriorate with low MAD or Q scores, large number of taxa, and high sequence divergence (largely owing to alignment problems). Only trees for (taxon) phylogenetically informative clusters with fewer than 1000 sequences are generated.


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