Cluster set at subtree whose root is 'Euglenozoa'

Click here to see taxon by cluster Data Availability Matrix
Cluster IDParent clusterTaxIDsGIsLminLmaxMAD1Q2Tcfi3Defline of longest sequenceTree4
0-4431203298 0.967- 0.000Euglena longa mRNA for photoactivated adenylyl cyclase alpha subunit, complete cds.
1-4427312818 0.990- 0.000Colacium sideropus mRNA for putative beta subunit of photoactivated adenylyl cyclase, complete cds, CsPAC2.
8-14027013962775 0.788- 0.000Lepocinclis fusca small subunit ribosomal RNA gene, complete sequence.
16-951289052148 0.662- 0.000Euglena cantabrica strain SAG 1224-25 16S small subunit ribosomal RNA gene, partial sequence; chloroplast.
18-8510016942893 0.616- 0.000Phacus hamelii strain ACOI1088 large subunit ribosomal RNA gene, partial sequence; plastid.
19-111110331310 0.923- 0.000Euglena stellata ribulose 1,5-bisphosphate carboxylase/oxygenase large subunit (rbcL) mRNA, chloroplast gene encoding chloroplast protein, partial cds.
24-505331244059 0.846- 0.000Lepocinclis fusiformis strain ACOI 1025 large subunit ribosomal RNA gene, partial sequence.
35-8811361707 0.780- 0.000Euglena mutabilis elongation factor TU (tufA) gene, partial cds; chloroplast gene for chloroplast product.
56-44805805 1.000- 0.000Lepocinclis ovata paraxial rod component PAR 2 mRNA, partial cds.
57-89570927 0.827- 0.000Crithidia oncopelti paraflagellar rod protein (PFR1) mRNA, partial cds.
73-131726992907 0.953- 0.000Menoidium gibbum strain SAG B 233.80 small subunit ribosomal RNA gene, partial sequence.
98-4436213848 0.971- 0.000Euglena sp. MI32 large subunit ribosomal RNA gene, partial sequence.
126-4413761605 0.905- 0.000Trachelomonas strain T502 large subunit ribosomal RNA gene, partial sequence.
155-91312661456 0.914- 0.000Strombomonas eurystoma strain S600 large subunit ribosomal RNA gene, partial sequence.
161-1101645403629 0.256- 0.000Leptomonas podlipaevi isolate 4-5 glycosomal glyceraldehyde-3-phosphate dehydrogenase (GAPDH) gene, complete cds.
162-3129023413452 0.453- 0.000Trypanosoma evansi DNA for 18S rRNA, 5.8S rRNA, complete sequence, 28S rRNA, partial sequence.
163-49659665 0.996- 0.000Crithidia deanei mini-exon gene repeat.
166-29375501254 0.819- 0.000Procryptobia sorokini HFCC16 28S ribosomal RNA gene, partial sequence.
173-1112116276 0.552- 0.000Leptomonas sp. P 5S ribosomal RNA gene and intergenic region, partial sequence.
174-1313502524 0.961- 0.000Trypanosomatidae sp. G755 isolate G755_PROF1_RPO2R RNA polymerase II large subunit gene, partial cds.
177-1343120139 0.962- 0.000Leishmania guyanensis Lgu2 7SL RNA gene, partial sequence.
191-5814244273 0.504- 0.000Crithidia deanei paraflagellar rod protein (PFR1) mRNA, complete cds.
207-122211351837 0.743- 0.000Trypanosoma danilewskyi alpha-tubulin mRNA, complete cds.
209-172610622190 0.650- 0.000Trypanosoma danilewskyi beta-tubulin mRNA, complete cds.
213-21765942959 0.430- 0.000Trypanosoma rangeli strain San Agustin clone 3 elongation factor 1-alpha (EF-1alpha) gene, complete cds.
229-1239279829 0.402- 0.000Trypanosoma rangeli kinetoplastid membrane protein 11 gene cluster, partial sequence.
234-4440264690 0.929- 0.000Leishmania enriettii multidrug resistant protein (mdr1) gene, complete cds.
250-27825291288 0.588- 0.000Leishmania enriettii RNA polymerase II large subunit gene, partial cds.
251-2425859939 0.974- 0.000Endotrypanum monterogei DNA polymerase alpha gene, partial cds.
252-191138221580 0.811- 0.000Leishmania sp. strain MHOM/PE/91/LC1408 6-phosphogluconate dehydrogenase (6pgd) gene, complete cds.
261-924567635 0.914- 0.000Leishmania turanica isolate RHO/CN/97/KMA2 putative ferrochelatase gene, partial cds.
262-112913211352 0.984- 0.000Leishmania enriettii isolate CAV/BR/45 N-acetylglucosamine-1-phosphate transferase gene, partial cds.
263-361614161104 0.613- 0.000Leishmania donovani chagasi kinetoplast pre-edited version of Cytb gene for cytochrome b.
264-452760760 1.000- 0.000Leishmania aethiopica strain LEM144 locus 2.061 genomic sequence.
265-553752960 0.787- 0.000Leishmania aethiopica strain LEM144 locus 03.0980 genomic sequence.
266-755436903 0.765- 0.000Leishmania gerbilli strain LEM452 locus 04.0580 genomic sequence.
267-452711711 1.000- 0.000Leishmania aethiopica strain LEM144 locus 10.0560 genomic sequence.
268-452803803 1.000- 0.000Leishmania aethiopica strain LEM144 locus 12.0010 genomic sequence.
269-7987811225 0.743- 0.000Leishmania gerbilli partial np2 gene for nucleoside hydrolase-like protein, strain MRHO/CN/1960/Gerbilli.
270-452812812 1.000- 0.000Leishmania aethiopica strain LEM144 locus 31.0280 genomic sequence.
271-452795795 1.000- 0.000Leishmania aethiopica strain LEM144 locus 31.1340 genomic sequence.
272-452728740 0.992- 0.000Leishmania aethiopica strain LEM144 locus 31.2130 genomic sequence.
273-1134186218 0.976- 0.000Leishmania archibaldi DNA repeat region.
276-723292447 0.858- 0.000Leishmania mexicana venezuelensis strain MHOM/VE/74/PM-H3 mini-exon repeat.
286-111605361141 0.874- 0.000Leishmania mexicana venezuelensis internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence.
287-6611191119 1.000- 0.000Leishmania aethiopica mkk gene for putative mitogen-activated protein (MAP) kinase kinase.
288-77705705 1.000- 0.000Leishmania aethiopica partial mpk1 gene for putative mitogen-activated protein kinase.
289-14757843229 0.519- 0.000Leishmania panamensis clone Lp63c1 major surface glycoprotein (gp63) pseudogene, complete sequence.
290-96011081287 0.960- 0.000Leishmania aethiopica asat gene for aspartate aminotransferase, strain MHOM/ET/1972/L100.
291-47256258 0.999- 0.000Leishmania killicki stage-specific S antigen-like protein (A2) gene, A2-type I allele, complete cds.
292-8376073372 0.349- 0.000Leishmania pifanoi cysteine proteinase (cys2) gene, complete cds.
293-579842431 0.561- 0.000Leishmania pifanoi cysteine proteinase gene, complete cds.
294-816555830 0.751- 0.000Leishmania chagasi peroxidoxin 3 (Pxn3) gene, complete cds.
295-49276524 0.834- 0.000Leishmania aethiopica isolate MHOM/ET/72/L100 cysteine proteinase (cpb) gene, partial cds.
296-101018461875 0.995- 0.000Leishmania donovani archibaldi strain MHOM:ET/72/GEBRE1 strand switch region, genomic sequence.
297-662221568 0.559- 0.000Leishmania turanica isolate IRN530 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence.
298-1216385387 0.997- 0.000Leishmania guyanensis strain WHI/BR/78/M5313 7SL RNA gene, partial sequence.
299-256512343758 0.473- 0.000Trypanosoma rangeli isolate Tre 70 kDa heat shock protein (hsp70) gene, complete cds.
300-147911313777 0.348- 0.000Leishmania guyanensis isolate 140 clone 1 actin gene, complete cds.
301-124716842916 0.600- 0.000Leishmania guyanensis strain MHOM/BR/1975/M4147 glucose-6-phosphate dehydrogenase (G6PD) mRNA, complete cds.
302-115013811971 0.943- 0.000Leishmania mexicana mexicana pgi gene for glucose-6-phosphate isomerase, strain NHOM/B2/84/BEL46.
303-735843954 0.997- 0.000Leishmania peruviana strain MHOM/PE/91/LEH0521 malate dehydrogenase (mdh) gene, complete cds.
304-137511631290 0.987- 0.000Leishmania peruviana strain MHOM/PE/90/HB44 mannose phosphate isomerase gene, complete cds.
305-610224328 0.727- 0.000L.lainsoni mini-exon gene for medRNA.
306-446671316 0.679- 0.000Leishmania panamensis subtelomeric tandem repeat sequence.
313-66438655 0.809- 0.000Leishmania guyanensis partial cpb gene for cysteine proteinase b.
317-820360630 0.698- 0.000Leishmania panamensis isolate WR 50158 glucosephosphate isomerase gene, partial sequence.
320-77615615 1.000- 0.000Leishmania naiffi strain MDAS/BR/79/M5533 RNA polymerase II large subunit gene, partial cds.
321-121412691347 0.979- 0.000Leishmania chagasi metacaspase (MCA5) gene, complete cds.
329-48263390 0.908- 0.000Leishmania gymnodactyli isolate LV 247 locus MINA trans-spliced leader sequence SL gene, complete sequence.
347-449991070 0.969- 0.000Leishmania panamensis strain MHOM/PA/1971/LS94 glucose-6-phosphate dehydrogenase (G6PD) mRNA, partial cds.
359-46536764 0.858- 0.000Leishmania panamensis ATPase 6 gene; kinetoplast gene for kinetoplast product.
360-9209361620 0.628- 0.000Leishmania panamensis activated protein kinase C receptor LACK-like mRNA, complete sequence.
370-1012394427 0.981- 0.000Leishmania equatorensis DNA, trans-spliced leader RNA sequence, strain:Lsp-1.
379-4103826899 0.154- 0.000L.chagasi (MHOM/Brazil/82/BA3) mini-exon.
385-467643816 0.931- 0.000Leishmania chagasi strain MHOM/PA/79/WR317 kinetoplast minicircle DNA, complete sequence.
398-6158191496 0.638- 0.000Leishmania turanica isolate RHO/CN/92/Wusu prostaglandin f2-alpha synthase gene, partial cds.
400-53313081308 1.000- 0.000Leishmania donovani archibaldi strain MHOM/SD/1997/LEM3463 mitochondrial isocitrate dehydrogenase (icd) gene, complete cds; nuclear gene for mitochondrial product.
401-54016441644 1.000- 0.000Leishmania donovani archibaldi strain MHOM/SD/1997/LEM3429 cytosolic NADP-malic enzyme (me) gene, partial cds.
402-913936936 1.000- 0.000Leishmania turanica isolate RHO/CN/92/Qi Dai zeta-crystallin/NADPH-oxidoreductase-like protein gene, partial cds.
431-4412281820 0.845- 0.000Leishmania donovani chagasi 18S ribosomal RNA gene.
432-1010217338 0.740- 0.000Blastocrithidia sp. ex Triatoma guasayana 24S alpha ribosomal RNA gene, partial sequence.
439-416115119 0.976- 0.000Leishmania chagasi kinetoplast minicircle DNA.
440-5536934500 0.889- 0.000Leishmania chagasi DNA topoisomerase II (TOP2) gene, complete cds.
445-4410231232 0.873- 0.000Leishmania donovani chagasi cathepsin B cysteine protease gene, complete cds.
448-5715632760 0.666- 0.000Leishmania donovani chagasi dhfr-ts gene, complete cds.
451-7606081106 0.905- 0.000Leishmania donovani chagasi strain MHOM/PA/78/WR285 nonspecific nucleoside hydrolase (nsnh) gene, partial cds.
463-5719052805 0.811- 0.000Trypanosoma congolense MTP70 mRNA for mitochondrial HSP70, complete cds.
472-4614281771 0.877- 0.000Leishmania donovani donovani tr gene for trypanothione reductase.
473-4413691688 0.901- 0.000Leishmania donovani donovani mRNA for cdc2-related kinase 3 (crk3 gene).
483-4414401443 0.999- 0.000Leishmania donovani donovani isolate MHOMISD/OO/lS-2D lanosterol 14-alpha demethylase (CYP51) gene, complete cds.
487-43317071707 1.000- 0.000Leishmania donovani archibaldi strain MHOM/SD/1997/LEM3429 fumarate hydratase (fh) gene, complete cds.
494-55322700 0.693- 0.000Leptomonas seymouri strain ATCC30220 cytochrome oxidase subunit II (COII) and MURF2 genes, partial sequence; kinetoplast.
539-410874877 0.997- 0.000Wallaceina inconstans isolate 1 trans-spliced leader sequence SL (trans-spliced leader sequence SL) gene, complete sequence.
540-443946 0.951- 0.000Leptomonas sp. Cfm spliced leader RNA gene, partial sequence.
543-668597 0.974- 0.000Leptomonas sp. F5 spliced leader RNA gene, complete sequence.
544-66392403 0.977- 0.000Leptomonas sp. C4 5S ribosomal RNA gene and intergenic region, partial sequence.
545-6981100 0.887- 0.000Blastocrithidia leptocoridis spliced leader RNA gene, complete sequence.
547-66551552 1.000- 0.000Endotrypanum schaudinni partial ppa gene for putative proton-translocating inorganic pyrophosphatase.
549-787101080 0.947- 0.000Trypanosomatidae sp. 80MV-E trans-spliced leader sequence, complete sequence.
564-44506627 0.855- 0.000Leishmania sp. IMT208 hypoxanthine-guanine phosphoribosyltransferase (HGPRT) gene, partial cds.
569-78301352 0.959- 0.000Leishmania sp. siamensis internal transcribed spacer 1 and 5.8S ribosomal RNA gene, partial sequence.
570-41085139 0.830- 0.000Leishmania sp. IRN580 internal transcribed spacer 2, partial sequence; and microsatellite ITS2 sequence.
600-46552552 1.000- 0.000Trypanosoma evansi strain ILRAD2374 glycerol kinase gene, partial cds.
602-4106338342 0.999- 0.000Trypanosoma evansi Tev-42 ESAG6 gene for transferrin receptor, partial cds.
604-68015962162 0.768- 0.000Trypanosoma evansi strain RoTat 1.2 clone CB8 ISG75 mRNA, complete cds.
609-51311901507 0.923- 0.000Trypanosoma equiperdum strain STIB 841 serum resistance-associated basic copy (SRAbc) pseudogene, partial sequence.
610-67453495 0.962- 0.000Trypanosoma brucei gambiense isolate TB26 cathepsin L-like protein gene, partial cds.
613-55210704004 0.338- 0.000Trypanosoma brucei rhodesiense transferrin-binding protein (ESAG 6-d) mRNA, complete cds.
614-442497641 0.985- 0.000Trypanosoma brucei gambiense clone TAR 2.2-37 BES type 2 promoter region.
623-5109901147 0.904- 0.000Trypanosoma evansi aox mRNA for alternative oxidase, complete cds, strain:IL3927.
629-44507653 0.836- 0.000Trypanosoma brucei rhodesiense transposon RIME, partial sequence.
631-4718005137 0.457- 0.000Trypanosoma evansi paraflagellar rod protein 2 mRNA, complete cds.
670-449901854 0.659- 0.000Trypanosoma evansi cyclic nucleotide phosphodiesterase (PDE2) gene, partial cds.
732-5612202070 0.663- 0.000Trypanosoma brucei rhodesiense strain 058CI.A3 glucose-6-phosphate isomerase (Gpi) gene, partial cds.
818-20207751200 0.707- 0.000Crithidia oncopelti kinetoplast 12S ribosomal RNA.
827-1314240781 0.382- 0.000Trypanosomatidae sp. 136YS trans-spliced leader sequence, complete sequence.
828-46198458 0.527- 0.000Trypanosomatidae sp. 82AL-A trans-spliced leader sequence, complete sequence.
842-81446458482 0.841- 0.000Trypanosoma grosi genes for IGS, 18S rRNA, 5.8S rRNA, 28S rRNA and ITS1-7, isolate: HANTO.
880-4520412544 0.928- 0.000T.congolense P69 antigen gene.
924-474741232 0.578- 0.000Trypanosoma carassii ubiquitin-fusion protein mRNA, complete cds.
1021-4536464243 0.935- 0.000Trypanosoma cyclops beta tubulin gene, partial cds; alpha tubulin gene, complete cds; and beta tubulin gene, partial cds.
1052-678671012 0.966- 0.000Herpetomonas muscarum kinetoplast cytochrome oxidase subunit III (COIII) mRNA, complete cds.
1054-44547550 0.997- 0.000Herpetomonas samuelpessoai kinetoplast 9S rRNA gene.
1114-1519711784 0.956- 0.000Trypanosomatidae sp. 7VL-B1 trans-spliced leader sequence and 5S ribosomal RNA gene, complete sequence.
1119-1111201201 1.000- 0.000Phytomonas sp. EhyGu minicircle conserved region; kinetoplast.
1129-99575711 0.839- 0.000Trypanosomatidae sp. 111YS trans-spliced leader sequence and 5S ribosomal RNA gene, complete sequence.
1130-2139749832 0.944- 0.000Trypanosomatidae sp. 113YS-C trans-spliced leader sequence and 5S ribosomal RNA gene, complete sequence.
1131-66760808 0.978- 0.000Trypanosomatidae sp. 115YS trans-spliced leader sequence and 5S ribosomal RNA gene, complete sequence.
1136-44713725 0.991- 0.000Trypanosomatidae sp. 71CN-D trans-spliced leader sequence and 5S ribosomal RNA gene, complete sequence.
1139-89695745 0.962- 0.000Trypanosomatidae sp. Ch2 clone 231JI3_B4 trans-spliced leader sequence SL, complete sequence.
1141-44269271 0.995- 0.000Trypanosomatidae sp. 21EC-B trans-spliced leader sequence, complete sequence.
1142-66475478 0.996- 0.000Trypanosomatidae sp. 4VL-A trans-spliced leader sequence and 5S ribosomal RNA gene, complete sequence.
1143-58292385 0.914- 0.000Trypanosomatidae sp. Ch13 clone 332JI2_A trans-spliced leader sequence SL, complete sequence.
1179-141618642572 0.763- 0.000Diplonema papillatum strain ATCC 50162 heat shock protein 90 (HSP-90) gene, partial cds.
1228-415615753053 0.568- 0.000Ichthyobodo necator 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
1229-44676677 1.000- 0.000Perkinsiella-like sp. PLO/SEDMH1/I trans-spliced leader sequence SL gene, complete sequence.
1244-99459463 0.992- 0.000Perkinsiella-like sp. PLO/NETH2T3/I trans-spliced leader sequence SL gene, complete sequence.
1258-101319752148 0.944- 0.000Diplonema sp. ATCC 50232 18S ribosomal RNA gene, partial sequence.

  1 Maximum Alignment Density
  2 "Q" alignment comparison score between default Clustal W and Muscle alignments
  3 Level of resolution (consensus fork index) of the strict consensus tree built from the two bootstrap trees from Clustal W and Muscle alignments.
  4 Trees are unrooted majority rule consensus trees from 'fast bootstrap parsimony' algorithm in PAUP* 4.0 using default ClustalW alignments. Expect performance to deteriorate with low MAD or Q scores, large number of taxa, and high sequence divergence (largely owing to alignment problems). Only trees for (taxon) phylogenetically informative clusters with fewer than 1000 sequences are generated.


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