Cluster set at subtree whose root is 'Acinonychinae'

Click here to see taxon by cluster Data Availability Matrix
Cluster IDParent clusterTaxIDsGIsLminLmaxMAD1Q2Tcfi3Defline of longest sequenceTree4
0761132013201 1.000- 0.000Acinonyx jubatus Saa1 gene for serum amyloid A 1, complete cds.-
1012374382 0.990- 0.000Acinonyx jubatus 16S ribosomal RNA gene, partial sequence; mitochondrial gene for mitochondrial product.-
2112318318 1.000- 0.000Acinonyx jubatus NADH dehydrogenase 5 gene, partial cds; mitochondrial gene for mitochondrial product.-
3711191191 1.000- 0.000Acinonyx jubatus ATPase 8 gene, partial cds; mitochondrial gene for mitochondrial product.-
451211781181 0.999- 0.000Acinonyx jubatus strain ajuX zinc finger protein Zfx (Zfx) gene, partial cds.-
577121701117047 0.999- 0.000Acinonyx jubatus mitochondrion, complete genome.-
68120525525 1.000- 0.000Acinonyx jubatus clone Aju-29 mitochondrial control region, complete sequence.-
77812902906 0.998- 0.000Acinonyx jubatus Hox8 early enhancer sequence.-
81211845845 1.000- 0.000Acinonyx jubatus Smcy gene, intron 4, complete sequence.-
95015235238 0.997- 0.000Acinonyx jubatus MHC class II antigen (FLA-DRB1) gene, FLA-DRB1*gd01 allele, exon 2 and partial cds.-
107913441441 1.000- 0.000Acinonyx jubatus isolate 1976 control region, partial sequence; mitochondrial.-
118011261261 1.000- 0.000Acinonyx jubatus isolate AJ 1976 NADH dehydrogenase subunit 5 gene, partial cds; mitochondrial.-
128111310310 1.000- 0.000Acinonyx jubatus isolate AJ S1571 NADH dehydrogenase subunit 4L and NADH dehydrogenase subunit 4 genes, partial cds; mitochondrial.-
138211712712 1.000- 0.000Acinonyx jubatus G protein-coupled receptor 33 (GPR33) gene, partial sequence.-
141311958958 1.000- 0.000Acinonyx jubatus Ube1y gene, exon 18 and partial cds.-
151411726726 1.000- 0.000Acinonyx jubatus Zfy gene, intron.-
165711567567 1.000- 0.000Acinonyx jubatus isolate 5 follicle stimulating hormone receptor (FSHR) mRNA, partial cds.-
178311361361 1.000- 0.000Acinonyx jubatus EPM2B gene repeat region, partial sequence.-
18212836885 0.972- 0.000Acinonyx jubatus TTR gene, partial sequence.-
191611640640 1.000- 0.000Acinonyx jubatus APP gene, partial sequence.-
205811817817 1.000- 0.000Acinonyx jubatus CALB gene, partial sequence.-
211711326326 1.000- 0.000Acinonyx jubatus CHRNA1 gene, partial sequence.-
22181113691369 1.000- 0.000Acinonyx jubatus CLU gene, partial sequence.-
231911518518 1.000- 0.000Acinonyx jubatus CMA1 (CMA1) gene, partial cds.-
242011713713 1.000- 0.000Acinonyx jubatus DGKG2 gene, partial sequence.-
252111412412 1.000- 0.000Acinonyx jubatus FES gene, partial sequence.-
262211441441 1.000- 0.000Acinonyx jubatus GATA3 gene, partial sequence.-
272311670670 1.000- 0.000Acinonyx jubatus GHR (GHR) gene, partial cds.-
282411622622 1.000- 0.000Acinonyx jubatus GNAZ (GNAZ) gene, partial cds.-
295911673673 1.000- 0.000Acinonyx jubatus GNB1 gene, partial sequence.-
302511349349 1.000- 0.000Acinonyx jubatus HK1 gene, partial sequence.-
312611296296 1.000- 0.000Acinonyx jubatus NCL (NCL) gene, partial cds.-
322711290290 1.000- 0.000Acinonyx jubatus PNOC (PNOC) gene, partial cds.-
332811473473 1.000- 0.000Acinonyx jubatus RAG2 (RAG2) gene, partial cds.-
342911551551 1.000- 0.000Acinonyx jubatus RSA2 gene, partial sequence.-
353011371371 1.000- 0.000Acinonyx jubatus SIL gene, partial sequence.-
363111590590 1.000- 0.000Acinonyx jubatus TCP1 (TCP1) gene, partial cds.-
373211513513 1.000- 0.000Acinonyx jubatus ALAS gene, partial sequence.-
383311670670 1.000- 0.000Acinonyx jubatus ATP-7A (ATP7A) gene, partial cds.-
393411318318 1.000- 0.000Acinonyx jubatus IL2RG (IL2RG) gene, partial cds.-
403611844844 1.000- 0.000Acinonyx jubatus isolate Aju72 ZFX gene, intron.-
41371127862786 1.000- 0.000Acinonyx jubatus sex-determining region Y protein (SRY) gene, complete cds.-
423811561561 1.000- 0.000Acinonyx jubatus 16S ribosomal RNA gene, partial sequence; mitochondrial.-
4384119191 1.000- 0.000Acinonyx jubatus 16S ribosomal RNA gene, partial sequence; mitochondrial.-
448511338338 1.000- 0.000Acinonyx jubatus amelogenin (AMELX) gene, exon 6 and partial cds.-
45861212921337 0.983- 0.000Acinonyx jubatus jubatus clone AJUI3 major histocompatibility complex class I antigen (FLA-I) mRNA, partial cds.-
467411179179 1.000- 0.000Acinonyx jubatus isolate D26 CD44 gene, exon v3 and partial cds, alternatively spliced.-
478711921921 1.000- 0.000Acinonyx jubatus prion protein (PRNP) gene, complete cds.-
488812546547 0.999- 0.000Acinonyx jubatus isolate cheetah 1 clone 1 interferon-gamma (IFNG) mRNA, complete cds.-

  1 Maximum Alignment Density
  2 "Q" alignment comparison score between default Clustal W and Muscle alignments
  3 Level of resolution (consensus fork index) of the strict consensus tree built from the two bootstrap trees from Clustal W and Muscle alignments.
  4 Trees are unrooted majority rule consensus trees from 'fast bootstrap parsimony' algorithm in PAUP* 4.0 using default ClustalW alignments. Expect performance to deteriorate with low MAD or Q scores, large number of taxa, and high sequence divergence (largely owing to alignment problems). Only trees for (taxon) phylogenetically informative clusters with fewer than 1000 sequences are generated.


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