Cluster set at subtree whose root is 'Felinae'

Click here to see taxon by cluster Data Availability Matrix
Cluster IDParent clusterTaxIDsGIsLminLmaxMAD1Q2Tcfi3Defline of longest sequenceTree4
002861288614 0.607- 0.000Herpailurus yaguarondi 16S ribosomal RNA gene, partial sequence; mitochondrial gene for mitochondrial product.
1127165220567 0.808- 0.000Leopardus tigrinus isolate bLti88 NADH dehydrogenase subunit 5 gene, partial cds; mitochondrial.
222836496885 0.972- 0.000Profelis aurata TTR gene, partial sequence.
33312555558 0.999- 0.000Felis chaus isolate FCCh05-5 BaEV endogenous retrovirus pol and env genes, partial sequence.-
4466185188 0.996- 0.000Felis margarita SINE element in Zfy gene, complete sequence.
55204011551181 0.996- 0.000Leopardus tigrinus strain LtiX zinc finger protein Zfx (Zfx) gene, partial cds.
6611588588 1.000- 0.000Felis silvestris CRX protein mRNA, partial cds.-
771211564355 0.621- 0.000Felis silvestris mitochondrial COII gene (partial), atpase8 gene, atpase6 gene (partial) and tRNA-Lys gene, isolate 1.
8816372190810 0.545- 0.000Prionailurus bengalensis mitochondrial DNA, D-loop region, haplotype: FDS2.
9101593100428 0.666- 0.000Prionailurus bengalensis mitochondrial cytb gene for cytochrome b, partial cds, specimen_voucher: Maya(Inokashira Zoo stock).
1020791010381044 0.997- 0.000Lynx canadensis NADH dehydrogenase subunit 2 (ND2) gene, complete cds; mitochondrial.
11914168801274 0.910- 0.000Lynx lynx interphotoreceptor retinoid-binding protein (irbp) gene, partial cds.
121013404741140 0.980- 0.000Prionailurus viverrinus cytochrome b (cytb) gene, complete cds; mitochondrial.
1311212301301 1.000- 0.000Felis silvestris haplotype H8 mitochondrion control region, partial sequence.-
141228287912567 0.387- 0.000Felis libyca Smcy gene, intron 4, complete sequence.
151327279411197 0.808- 0.000Otocolobus manul Ube1y gene, exon 18 and partial cds.
16142829713969 0.809- 0.000Felis silvestris Zfy gene, intron.
171533431435 0.994- 0.000Leopardus pardalis thyroxine-binding globulin (TBG) gene, partial sequence.-
18163032639642 0.997- 0.000Herpailurus yaguarondi APP gene, partial sequence.
19173035299332 0.979- 0.000Lynx canadensis cholinergic receptor nicotinic alpha polypeptide 1 precursor (CHRNA1) gene, partial cds.
2018303013591373 0.997- 0.000Otocolobus manul CLU gene, partial sequence.
21192929515518 1.000- 0.000Oncifelis colocolo CMA1 (CMA1) gene, partial cds.
22202929702715 0.987- 0.000Catopuma badia DGKG2 gene, partial sequence.
23212828381413 0.995- 0.000Felis libyca FES gene, partial sequence.
24222929440445 0.991- 0.000Leopardus wiedii GATA3 gene, partial sequence.
25232929665670 1.000- 0.000Profelis aurata GHR (GHR) gene, partial cds.
26243030622622 1.000- 0.000Leopardus pardalis GNAZ (GNAZ) gene, partial cds.
27253030206357 0.963- 0.000Lynx canadensis HK1 gene, partial sequence.
28263030294296 0.999- 0.000Oncifelis guigna NCL (NCL) gene, partial cds.
29273030290290 1.000- 0.000Leopardus tigrinus PNOC (PNOC) gene, partial cds.
30283033423777 0.618- 0.000Leptailurus serval RAG2 (RAG2) gene, partial cds.
31293030548552 0.998- 0.000Felis nigripes RSA2 gene, partial sequence.
32303030371372 0.998- 0.000Leopardus tigrinus SIL gene, partial sequence.
33312929587601 0.985- 0.000Prionailurus bengalensis TCP1 (TCP1) gene, partial cds.
34323030319513 0.986- 0.000Oncifelis geoffroyi ALAS gene, partial sequence.
35333030670670 1.000- 0.000Leptailurus serval ATP-7A (ATP7A) gene, partial cds.
36343030318319 0.997- 0.000Oreailurus jacobita IL2RG (IL2RG) gene, partial cds.
37352929898900 0.999- 0.000Catopuma temminckii PLP gene, partial sequence.
38362829823847 0.994- 0.000Felis chaus isolate Fch ZFX gene, intron.
3937282918952792 0.969- 0.000Herpailurus yaguarondi sex-determining region Y protein (SRY) gene, complete cds.
4038345621033 0.886- 0.000Felis silvestris voucher UAM:Mamm:50375 16S ribosomal RNA gene, partial sequence; mitochondrial.-
42401111401140 1.000- 0.000Felis silvestris isolate N51 cytochrome b (cytb) gene, complete cds; mitochondrial.-
434111720720 1.000- 0.000Cat c-myc gene, complete cds.-
444211901901 1.000- 0.000Cat c-myc gene, complete cds.-
45431112601260 1.000- 0.000Cat c-myc gene, complete cds.-
464411633633 1.000- 0.000Felis silvestris aminopeptidase N gene, partial cds.-
47452211251752 0.821- 0.000Cat c-sis oncogene (platelet-derived growth factor) 5' region.-
48461134253425 1.000- 0.000Feline mRNA for c-sis proto-oncogene for PDGF beta PDGF = platelet-derived growth factor.-
494711457457 1.000- 0.000Feline mRNA for preprogastrin.-
50481157325732 1.000- 0.000Cat ECE1 endogenous retroviral element DNA, partial.-
514944188269 0.914- 0.000Felis silvestris bieti microsatellite FBI-5 sequence.
525012269235238 0.999- 0.000Leopardus wiedii MHC class II DR antigen beta subunit (Lewi-DRB) gene, Lewi-DRB*0221 allele, exon 2 and partial cds.
535122724752 0.981- 0.000Felis catus mRNA for interleukin 6, complete cds.-
54521135343534 1.000- 0.000Cat MHC class I protein (FLA-A-psi) pseudogene, 3' end.-
555311879879 1.000- 0.000Lynx lynx H19 RNA gene, partial sequence.-
5654925371382 0.990- 0.000Lynx canadensis voucher Lca7 12S ribosomal RNA gene, partial sequence; mitochondrial.
575566654893 0.821- 0.000Otocolobus manul beta fibrinogen gene, intron 7.
58567813681378 0.995- 0.000Lynx canadensis NADH dehydrogenase subunit 4 (ND4) gene, complete cds; mitochondrial.
595722567567 1.000- 0.000Lynx lynx isolate 3 follicle stimulating hormone receptor (FSHR) mRNA, partial cds.-
60582626813821 0.995- 0.000Profelis aurata CALB gene, partial sequence.
61592626573674 0.976- 0.000Prionailurus rubiginosa GNB1 gene, partial sequence.
62602229552957 1.000- 0.000Lynx lynx steroid 21-hydroxylase gene, complete cds.-
636138579870 0.709- 0.000Lynx lynx isolate 2 apolipoprotein B editing enzyme catalytic polypeptide-like 3C mRNA, complete cds, alternatively spliced.-
6462345821119 0.688- 0.000Lynx lynx apolipoprotein B editing enzyme catalytic polypeptide-like 3H mRNA, complete cds.-
656337663783 0.924- 0.000Lynx lynx voucher PL-IGAB-ZI24 cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial.-
666411843843 1.000- 0.000Lynx lynx tyrosine aminotransferase gene, intron.-
676511684684 1.000- 0.000Lynx lynx tyrosine aminotransferase gene, partial cds.-
686611443443 1.000- 0.000Lynx lynx serine protease inhibitor Kazal-type 5 (SPINK5) gene, partial cds.-
696711845845 1.000- 0.000Lynx lynx SH2 domain protein C1 gene, partial cds.-
706811387387 1.000- 0.000Lynx lynx phosphodiesterase 6B gene, partial cds.-
716911840840 1.000- 0.000Lynx lynx nucleoporin Nup107 gene, partial cds.-
727011794794 1.000- 0.000Lynx lynx natural resistance associated macrophage protein (NRAMP1) gene, partial cds.-
737156446652 0.919- 0.000Lynx canadensis growth hormone receptor (GHR) gene, partial cds.
747211483483 1.000- 0.000Lynx lynx desmin gene, partial cds.-
757311788788 1.000- 0.000Lynx lynx angio-associated migratory cell protein (AAMP) gene, partial sequence.-
767433179179 1.000- 0.000Lynx lynx isolate D27 CD44 gene, exon v3 and partial cds, alternatively spliced.-
77753413141616 0.860- 0.000Lynx lynx apolipoprotein B mRNA editing enzyme catalytic polypeptide 3 mRNA, complete cds.-
7889577721112 0.902- 0.000Prionailurus iriomotensis rag1 gene for recombination activating gene 1, partial cds, specimen_voucher: personal:Hitoshi Suzuki:HS599.
799044938963 0.994- 0.000Prionailurus iriomotensis APOB gene for apolipoprotein B, partial cds, specimen_voucher: personal:Hitoshi Suzuki:HS599.
8091516375221 0.859- 0.000Leopardus tigrinus isolate bLti10 control region, partial sequence; mitochondrial.
8192817187187 1.000- 0.000Oncifelis geoffroyi MHC class I antigen (FLA-Z) gene, FLA-Z*8 allele, exon 2 and partial cds.
8293817218218 1.000- 0.000Leopardus pardalis MHC class I antigen (FLA-Z) gene, FLA-Z*10 allele, exon 3 and partial cds.
839422808817 0.995- 0.000Leopardus pardalis 16S ribosomal RNA gene, partial sequence; mitochondrial gene for mitochondrial product.-
849522321321 1.000- 0.000Leopardus pardalis adenosine A3 receptor (ADORA3) gene, partial cds.-
8596238261536 0.692- 0.000Leopardus pardalis beta-2 adrenergic receptor (ADRB2) gene, partial cds.-
869722675675 1.000- 0.000Leopardus pardalis ATP7A (ATP7A) gene, partial cds.-
879823558744 0.833- 0.000Leopardus pardalis brain-derived neurotrophic factor (BDNF) gene, partial cds.-
889922311311 1.000- 0.000Leopardus pardalis BMI1 (BMI1) gene, 3' UTR.-
89100239901419 0.798- 0.000Leopardus pardalis cannabinoid receptor 1 (CNR1) gene, partial cds.-
9010122405405 1.000- 0.000Leopardus pardalis cAMP responsive element moderator (CREM) gene, partial cds and 3' UTR.-
9110222975975 1.000- 0.000Leopardus pardalis EDG1 (EDG1) gene, partial cds.-
9210322317317 1.000- 0.000Leopardus pardalis phospholipase C beta 4 (PLCB4) gene, 3' UTR.-
9310422285285 1.000- 0.000Leopardus pardalis prepronociceptin (PNOC) gene, partial cds.-
9410525426692 0.831- 0.000Leopardus pardalis tyrosinase (TYR) gene, partial cds.-
9510622204204 1.000- 0.000Leopardus pardalis zinc finger protein ZFX (ZFX) gene, partial cds.-
9654459591024 0.963- 0.000Leopardus pardalis 12S ribosomal RNA gene, partial sequence; and tRNA-Val gene, complete sequence; mitochondrial genes for mitochondrial products.
977833900927 0.982- 0.000Felis margarita Hox8 early enhancer sequence.-
98107136363 1.000- 0.000Leopardus pardalis clone BAB cytochrome b gene, partial cds; mitochondrial.-
998622010381490 0.831- 0.000Leopardus pardalis clone LPAI69K major histocompatibility complex class I antigen (FLA-I) mRNA, partial cds.-
100381110621062 1.000- 0.000Felis pardalis 12S ribosomal RNA gene, partial sequence, tRNA Val gene, complete sequence and 16S ribosomal RNA gene, partial sequence, mitochondrial genes encoding mitochondrial RNAs.-
1011083310431043 1.000- 0.000Prionailurus iriomotensis brca1 gene for breast and ovarian cancer susceptibility protein 1, partial cds, specimen_voucher: personal:Hitoshi Suzuki:HS599.-
1021094511911209 0.989- 0.000Prionailurus bengalensis vwf gene for von Willebrand factor, partial cds, specimen_voucher: personal:Hitoshi Suzuki:HS1021.
10311011318318 1.000- 0.000Prionailurus bengalensis DBY gene for Y-linked DBY, partial cds, specimen_voucher: Palam/Yuuki(Inokashira Zoo stock).-
10411111318318 1.000- 0.000Prionailurus bengalensis iduronate 2-sulfatase gene, partial cds.-
10511222728743 0.990- 0.000Prionailurus viverrinus internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence.-
10611311133133 1.000- 0.000Felis chaus isolate WII/WFC/R-299 cytochrome b gene, partial cds; mitochondrial.-
10711411739739 1.000- 0.000Felis chaus internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence.-
108115229041720 0.763- 0.000Leopardus wiedii UDP-glucuronosyltransferase (UGT1A6) pseudogene, partial sequence.-
10911611127127 1.000- 0.000Lynx canadensis microsatellite Lc106 sequence.-
11011711754754 1.000- 0.000Lynx canadensis microsatellite Lc109 sequence.-
11111811106106 1.000- 0.000Lynx canadensis microsatellite Lc110 sequence.-
11211911165165 1.000- 0.000Lynx canadensis microsatellite Lc111 sequence.-
11312011251251 1.000- 0.000Lynx canadensis microsatellite Lc118 sequence.-
11412111249249 1.000- 0.000Lynx canadensis microsatellite Lc120 sequence.-
11512223199312 0.758- 0.000Lynx canadensis isolate LY12 tooth enamel protein (AMEL) gene, exon 5 and partial cds.-
11612322681681 1.000- 0.000Lynx canadensis ATP synthase F0 subunit 6 (ATP6) gene, complete cds; mitochondrial.-
117635515451545 1.000- 0.000Prionailurus viverrinus isolate FCCOI cytochrome c oxidase subunit I (COX1) gene, complete cds; mitochondrial.
11812455684684 1.000- 0.000Catopuma temminckii isolate AGCCOII cytochrome c oxidase subunit II (COX2) gene, complete cds; mitochondrial.
11912533784784 1.000- 0.000Lynx canadensis cytochrome c oxidase subunit III (COX3) gene, complete cds; mitochondrial.-
12012622957957 1.000- 0.000Lynx canadensis NADH dehydrogenase subunit 1 (ND1) gene, complete cds; mitochondrial.-
12112722347347 1.000- 0.000Lynx canadensis NADH dehydrogenase subunit 3 (ND3) gene, complete cds; mitochondrial.-
12212822297297 1.000- 0.000Lynx canadensis NADH dehydrogenase subunit 4L (ND4L) gene, complete cds; mitochondrial.-
12312911320320 1.000- 0.000Lynx canadensis collagen type X alpha 1 (COL10A1) gene, partial cds.-
12413011434434 1.000- 0.000Lynx canadensis transducin alpha 1 (GNAT1) gene, partial cds.-
12513111683683 1.000- 0.000Lynx canadensis Wilms tumor 1 (WT1) gene, partial cds.-
12613211381381 1.000- 0.000Lynx canadensis feline sarcoma protooncogene (FES) gene, partial cds.-
12713344272272 1.000- 0.000Lynx rufus rhodopsin (RHO1) gene, partial cds.
12879214282429 0.922- 0.000Lynx canadensis isolate Vic control region, partial sequence; mitochondrial.-
1298747642950 0.892- 0.000Lynx rufus prion protein (PRNP) gene, complete cds.
13013411702702 1.000- 0.000Lynx rufus clone bcd1t microsatellite sequence.-
13113511489489 1.000- 0.000Lynx rufus clone bce5t microsatellite sequence.-
13213611413413 1.000- 0.000Lynx rufus clone bcg3d microsatellite sequence.-
13313711495495 1.000- 0.000Lynx rufus clone bcd8t microsatellite sequences.-
13413811425425 1.000- 0.000Lynx rufus clone bcg8t microsatellite sequence.-
13513911796796 1.000- 0.000Lynx rufus clone bch6t microsatellite sequence.-
13614011659659 1.000- 0.000Lynx rufus clone bcb12d microsatellite sequence.-
13714111629629 1.000- 0.000Lynx rufus clone bc1at microsatellite sequence.-
13814211484484 1.000- 0.000Lynx rufus clone bch8t microsatellite sequence.-
13914311609609 1.000- 0.000Lynx rufus clone bch7t microsatellite sequence.-
14014411437437 1.000- 0.000Lynx rufus clone bcg11d microsatellite sequence.-
14114511698698 1.000- 0.000Lynx rufus clone bcg7t microsatellite sequence.-
14214611306306 1.000- 0.000Lynx rufus clone bcg4t microsatellite sequences.-
14314711225225 1.000- 0.000Lynx rufus clone bcf9d microsatellite sequences.-
14414811975975 1.000- 0.000Lynx rufus clone bcf8t microsatellite sequences.-
14514911566566 1.000- 0.000Lynx rufus clone bcf6t microsatellite sequences.-
14615011406406 1.000- 0.000Lynx rufus clone bcf2d microsatellite sequence.-
14715111438438 1.000- 0.000Lynx rufus clone bce9d microsatellite sequence.-
14815212545554 0.992- 0.000Lynx rufus clone bce3d microsatellite sequence.-
14915311256256 1.000- 0.000Lynx rufus clone bce1d microsatellite sequences.-
15015411359359 1.000- 0.000Lynx rufus clone bcd9d microsatellite sequence.-
15115512411505 0.907- 0.000Lynx rufus clone bcc7t microsatellite sequences.-
15215611705705 1.000- 0.000Lynx rufus clone bcd5t microsatellite sequence.-
15315711567567 1.000- 0.000Lynx rufus clone bcd4t microsatellite sequence.-
15415811391391 1.000- 0.000Lynx rufus clone bcd1d microsatellite sequences.-
15515911410410 1.000- 0.000Lynx rufus clone bcc10d microsatellite sequences.-
15616011428428 1.000- 0.000Lynx rufus clone bcc4t microsatellite sequence.-
15716111706706 1.000- 0.000Lynx rufus clone bcb10d microsatellite sequence.-
15816211430430 1.000- 0.000Lynx rufus clone bcb9d microsatellite sequence.-
15916311420420 1.000- 0.000Lynx rufus clone bca12d microsatellite sequence.-
16016411441441 1.000- 0.000Lynx rufus clone bc8bd microsatellite sequence.-
16116511389389 1.000- 0.000Lynx rufus clone bc8a microsatellite sequence.-
16216611440440 1.000- 0.000Lynx rufus clone bc2at microsatellite sequence.-
16316722738824 0.948- 0.000Lynx rufus thiopurine S-methyltransferase mRNA, complete cds.-
164168138463464 0.998- 0.000Lynx rufus isolate WY132 control region, partial sequence; mitochondrial.-
1658322327356 0.959- 0.000Caracal caracal EPM2B gene repeat region, partial sequence.-
16616927881954 0.986- 0.000Herpailurus yaguarondi melanocortin-1 receptor (MC1R) gene, complete cds.-
16717011229229 1.000- 0.000Leptailurus serval GTP-binding protein (RAB1A) mRNA, 3' untranslated region.-
1681711110511051 1.000- 0.000Felis sp. NG192 DNA, INT292 locus sequence.-
1691721115181518 1.000- 0.000Felis sp. NG192 DNA, INT1193 locus sequence.-
17017311829829 1.000- 0.000Felis sp. NG192 DNA, INT1095 locus sequence.-
17117411820820 1.000- 0.000Felis sp. NG192 ATP6AP2 gene, INT0964 locus sequence.-
1721751111001100 1.000- 0.000Felis sp. NG192 FLJ21616 gene, INT1067 locus sequence.-
17317611631631 1.000- 0.000Felis sp. NG192 SCUBE3 gene, INT1075 locus sequence.-
17417711531531 1.000- 0.000Felis sp. NG192 MAEL gene, INT1111 locus sequence.-
17517811250250 1.000- 0.000Felis sp. NG192 EPC1 gene, INT1124 locus sequence.-
1761791110261026 1.000- 0.000Felis sp. NG192 COL3A1 gene, INT1167 locus sequence.-
1771801112561256 1.000- 0.000Felis sp. NG192 EPB41L4A gene, INT1189 locus sequence.-
17818111416416 1.000- 0.000Felis sp. NG192 KIF2 gene, INT1068 locus sequence.-
1791821110941094 1.000- 0.000Felis sp. NG192 LTBP1 gene, INT1098 locus sequence.-
18018311722722 1.000- 0.000Felis sp. NG192 DDX42 gene, INT1122 locus sequence.-
18118411787787 1.000- 0.000Felis sp. NG192 WDR44 gene, INT1233 locus sequence.-
18218511718718 1.000- 0.000Felis sp. NG192 NNT gene, INT276 locus sequence.-
18318611696696 1.000- 0.000Felis sp. NG192 ACSL5 gene, INT391 locus sequence.-
18418711221221 1.000- 0.000Felis silvestris silvestris voucher FSI880 interphotoreceptor retinoid-binding protein (IRBP) gene, exon 1 and partial cds.-

  1 Maximum Alignment Density
  2 "Q" alignment comparison score between default Clustal W and Muscle alignments
  3 Level of resolution (consensus fork index) of the strict consensus tree built from the two bootstrap trees from Clustal W and Muscle alignments.
  4 Trees are unrooted majority rule consensus trees from 'fast bootstrap parsimony' algorithm in PAUP* 4.0 using default ClustalW alignments. Expect performance to deteriorate with low MAD or Q scores, large number of taxa, and high sequence divergence (largely owing to alignment problems). Only trees for (taxon) phylogenetically informative clusters with fewer than 1000 sequences are generated.


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