Cluster set at subtree whose root is 'Felinae'

Click here to see taxon by cluster Data Availability Matrix
Cluster IDParent clusterTaxIDsGIsLminLmaxMAD1Q2Tcfi3Defline of longest sequenceTree4
002861288614 0.607- 0.000Herpailurus yaguarondi 16S ribosomal RNA gene, partial sequence; mitochondrial gene for mitochondrial product.
1127165220567 0.808- 0.000Leopardus tigrinus isolate bLti88 NADH dehydrogenase subunit 5 gene, partial cds; mitochondrial.
222836496885 0.972- 0.000Profelis aurata TTR gene, partial sequence.
4466185188 0.996- 0.000Felis margarita SINE element in Zfy gene, complete sequence.
55204011551181 0.996- 0.000Leopardus tigrinus strain LtiX zinc finger protein Zfx (Zfx) gene, partial cds.
771211564355 0.621- 0.000Felis silvestris mitochondrial COII gene (partial), atpase8 gene, atpase6 gene (partial) and tRNA-Lys gene, isolate 1.
8816372190810 0.545- 0.000Prionailurus bengalensis mitochondrial DNA, D-loop region, haplotype: FDS2.
9101593100428 0.666- 0.000Prionailurus bengalensis mitochondrial cytb gene for cytochrome b, partial cds, specimen_voucher: Maya(Inokashira Zoo stock).
1020791010381044 0.997- 0.000Lynx canadensis NADH dehydrogenase subunit 2 (ND2) gene, complete cds; mitochondrial.
11914168801274 0.910- 0.000Lynx lynx interphotoreceptor retinoid-binding protein (irbp) gene, partial cds.
121013404741140 0.980- 0.000Prionailurus viverrinus cytochrome b (cytb) gene, complete cds; mitochondrial.
141228287912567 0.387- 0.000Felis libyca Smcy gene, intron 4, complete sequence.
151327279411197 0.808- 0.000Otocolobus manul Ube1y gene, exon 18 and partial cds.
16142829713969 0.809- 0.000Felis silvestris Zfy gene, intron.
18163032639642 0.997- 0.000Herpailurus yaguarondi APP gene, partial sequence.
19173035299332 0.979- 0.000Lynx canadensis cholinergic receptor nicotinic alpha polypeptide 1 precursor (CHRNA1) gene, partial cds.
2018303013591373 0.997- 0.000Otocolobus manul CLU gene, partial sequence.
21192929515518 1.000- 0.000Oncifelis colocolo CMA1 (CMA1) gene, partial cds.
22202929702715 0.987- 0.000Catopuma badia DGKG2 gene, partial sequence.
23212828381413 0.995- 0.000Felis libyca FES gene, partial sequence.
24222929440445 0.991- 0.000Leopardus wiedii GATA3 gene, partial sequence.
25232929665670 1.000- 0.000Profelis aurata GHR (GHR) gene, partial cds.
26243030622622 1.000- 0.000Leopardus pardalis GNAZ (GNAZ) gene, partial cds.
27253030206357 0.963- 0.000Lynx canadensis HK1 gene, partial sequence.
28263030294296 0.999- 0.000Oncifelis guigna NCL (NCL) gene, partial cds.
29273030290290 1.000- 0.000Leopardus tigrinus PNOC (PNOC) gene, partial cds.
30283033423777 0.618- 0.000Leptailurus serval RAG2 (RAG2) gene, partial cds.
31293030548552 0.998- 0.000Felis nigripes RSA2 gene, partial sequence.
32303030371372 0.998- 0.000Leopardus tigrinus SIL gene, partial sequence.
33312929587601 0.985- 0.000Prionailurus bengalensis TCP1 (TCP1) gene, partial cds.
34323030319513 0.986- 0.000Oncifelis geoffroyi ALAS gene, partial sequence.
35333030670670 1.000- 0.000Leptailurus serval ATP-7A (ATP7A) gene, partial cds.
36343030318319 0.997- 0.000Oreailurus jacobita IL2RG (IL2RG) gene, partial cds.
37352929898900 0.999- 0.000Catopuma temminckii PLP gene, partial sequence.
38362829823847 0.994- 0.000Felis chaus isolate Fch ZFX gene, intron.
3937282918952792 0.969- 0.000Herpailurus yaguarondi sex-determining region Y protein (SRY) gene, complete cds.
514944188269 0.914- 0.000Felis silvestris bieti microsatellite FBI-5 sequence.
525012269235238 0.999- 0.000Leopardus wiedii MHC class II DR antigen beta subunit (Lewi-DRB) gene, Lewi-DRB*0221 allele, exon 2 and partial cds.
5654925371382 0.990- 0.000Lynx canadensis voucher Lca7 12S ribosomal RNA gene, partial sequence; mitochondrial.
575566654893 0.821- 0.000Otocolobus manul beta fibrinogen gene, intron 7.
58567813681378 0.995- 0.000Lynx canadensis NADH dehydrogenase subunit 4 (ND4) gene, complete cds; mitochondrial.
60582626813821 0.995- 0.000Profelis aurata CALB gene, partial sequence.
61592626573674 0.976- 0.000Prionailurus rubiginosa GNB1 gene, partial sequence.
737156446652 0.919- 0.000Lynx canadensis growth hormone receptor (GHR) gene, partial cds.
7889577721112 0.902- 0.000Prionailurus iriomotensis rag1 gene for recombination activating gene 1, partial cds, specimen_voucher: personal:Hitoshi Suzuki:HS599.
799044938963 0.994- 0.000Prionailurus iriomotensis APOB gene for apolipoprotein B, partial cds, specimen_voucher: personal:Hitoshi Suzuki:HS599.
8091516375221 0.859- 0.000Leopardus tigrinus isolate bLti10 control region, partial sequence; mitochondrial.
8192817187187 1.000- 0.000Oncifelis geoffroyi MHC class I antigen (FLA-Z) gene, FLA-Z*8 allele, exon 2 and partial cds.
8293817218218 1.000- 0.000Leopardus pardalis MHC class I antigen (FLA-Z) gene, FLA-Z*10 allele, exon 3 and partial cds.
9654459591024 0.963- 0.000Leopardus pardalis 12S ribosomal RNA gene, partial sequence; and tRNA-Val gene, complete sequence; mitochondrial genes for mitochondrial products.
1021094511911209 0.989- 0.000Prionailurus bengalensis vwf gene for von Willebrand factor, partial cds, specimen_voucher: personal:Hitoshi Suzuki:HS1021.
117635515451545 1.000- 0.000Prionailurus viverrinus isolate FCCOI cytochrome c oxidase subunit I (COX1) gene, complete cds; mitochondrial.
11812455684684 1.000- 0.000Catopuma temminckii isolate AGCCOII cytochrome c oxidase subunit II (COX2) gene, complete cds; mitochondrial.
12713344272272 1.000- 0.000Lynx rufus rhodopsin (RHO1) gene, partial cds.
1298747642950 0.892- 0.000Lynx rufus prion protein (PRNP) gene, complete cds.

  1 Maximum Alignment Density
  2 "Q" alignment comparison score between default Clustal W and Muscle alignments
  3 Level of resolution (consensus fork index) of the strict consensus tree built from the two bootstrap trees from Clustal W and Muscle alignments.
  4 Trees are unrooted majority rule consensus trees from 'fast bootstrap parsimony' algorithm in PAUP* 4.0 using default ClustalW alignments. Expect performance to deteriorate with low MAD or Q scores, large number of taxa, and high sequence divergence (largely owing to alignment problems). Only trees for (taxon) phylogenetically informative clusters with fewer than 1000 sequences are generated.


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