Cluster set at subtree whose root is 'Pantherinae'

Click here to see taxon by cluster Data Availability Matrix
Cluster IDParent clusterTaxIDsGIsLminLmaxMAD1Q2Tcfi3Defline of longest sequenceTree4
097128321274 0.935- 0.000Panthera pardus interphotoreceptor retinoid-binding protein (irbp) gene, partial cds.
189467741095 0.948- 0.000Panthera tigris RAG1 gene, partial cds, isolate: HS1201.
29045957963 0.999- 0.000Panthera tigris APOB gene for apolipoprotein B, partial cds, isolate: HS1201.
301027361532 0.757- 0.000Panthera pardus 16S ribosomal RNA gene, partial sequence; mitochondrial.
411156220611 0.827- 0.000Panthera pardus isolate NIM1 NADH dehydrogenase subunit 5 (NADH5) gene, partial cds; mitochondrial gene for mitochondrial product.
52713785885 0.967- 0.000Uncia uncia TTR gene, partial sequence.
610172631651760 0.443- 0.000Panthera leo isolate P88017 from Morocco cytochrome b gene, complete cds; tRNA-Thr and tRNA-Pro genes, complete sequence; and control region, partial sequence; mitochondrial.
7551011781181 0.999- 0.000Neofelis nebulosa strain nnex zinc finger protein Zfx (Zfx) gene, partial cds.
108246929979 0.987- 0.000Uncia uncia G protein-coupled receptor 33 (GPR33) gene, GPR33-B allele, partial sequence.
111377940958 0.997- 0.000Neofelis nebulosa Ube1y gene, exon 18 and partial cds.
121499724755 0.969- 0.000Panthera pardus orientalis Zfy gene, intron sequence, specimen_voucher: PPA68 (National Cancer Center USA stock).
131277791841 0.982- 0.000Uncia uncia Smcy gene, intron 4, complete sequence.
145555654654 1.000- 0.000Neofelis nebulosa beta fibrinogen gene, intron 7.
15566713681375 0.996- 0.000Panthera pardus NADH dehydrogenase subunit 4 (ND4) gene, partial cds; mitochondrial.
1657711567567 1.000- 0.000Panthera tigris altaica isolate 1 follicle stimulating hormone receptor (FSHR) mRNA, partial cds.
178344339358 0.987- 0.000Uncia uncia EPM2B gene repeat region, partial sequence.
2117810235332 0.954- 0.000Panthera leo cholinergic receptor nicotinic alpha polypeptide 1 precursor (CHRNA1) gene, partial cds.
271667638643 0.998- 0.000Panthera onca amyloid beta precursor protein (APP) gene, partial cds.
285877815817 1.000- 0.000Panthera tigris CALB gene, partial sequence.
29187713681369 1.000- 0.000Panthera pardus CLU gene, partial sequence.
301977517518 1.000- 0.000Uncia uncia CMA1 (CMA1) gene, partial cds.
312077705708 0.997- 0.000Panthera onca DGKG2 gene, partial sequence.
322177243412 0.941- 0.000Pardofelis marmorata FES gene, partial sequence.
332277441457 0.970- 0.000Panthera tigris GATA3 gene, partial sequence.
342377669670 1.000- 0.000Neofelis nebulosa GHR (GHR) gene, partial cds.
352477622622 1.000- 0.000Panthera onca GNAZ (GNAZ) gene, partial cds.
365977576674 0.979- 0.000Neofelis nebulosa GNB1 gene, partial sequence.
372577345349 0.998- 0.000Neofelis nebulosa HK1 gene, partial sequence.
382677294296 0.999- 0.000Neofelis nebulosa NCL (NCL) gene, partial cds.
392777290290 1.000- 0.000Neofelis nebulosa PNOC (PNOC) gene, partial cds.
402878430473 0.989- 0.000Pardofelis marmorata RAG2 (RAG2) gene, partial cds.
412977551551 1.000- 0.000Neofelis nebulosa RSA2 gene, partial sequence.
423077371371 1.000- 0.000Panthera onca SIL gene, partial sequence.
433177585595 0.994- 0.000Uncia uncia TCP1 (TCP1) gene, partial cds.
443277508513 0.999- 0.000Neofelis nebulosa ALAS gene, partial sequence.
453377670670 1.000- 0.000Uncia uncia ATP-7A (ATP7A) gene, partial cds.
463477318318 1.000- 0.000Panthera onca IL2RG (IL2RG) gene, partial cds.
473577766900 0.957- 0.000Pardofelis marmorata PLP gene, partial sequence.
4836911841845 0.999- 0.000Neofelis nebulosa isolate Nne27 ZFX gene, intron.
49377726592730 0.988- 0.000Pardofelis marmorata sex-determining region Y protein (SRY) gene, complete cds.
5291445109210 0.803- 0.000Panthera leo haplotype T control region, partial sequence; mitochondrial.
5371255139187 0.791- 0.000Pardofelis marmorata voucher Pma5 ATPase 8 (ATP8) gene, partial cds; mitochondrial.
565410443421025 0.495- 0.000Panthera onca 12S ribosomal RNA gene, partial sequence; and tRNA-Val gene, complete sequence; mitochondrial genes for mitochondrial products.
624977272287 0.969- 0.000Panthera tigris amoyensis microsatellite PTA sequence.
6350529237237 1.000- 0.000Panthera pardus MHC class II antigen (Papa-DRB) gene, Papa-DRB*301 allele, exon 2 and partial cds.
667455178179 0.999- 0.000Panthera onca isolate D29 CD44 gene, exon v3 and partial cds, alternatively spliced.
671084410431043 1.000- 0.000Panthera onca brca1 gene for breast and ovarian cancer susceptibility protein 1, partial cds, specimen_voucher: personal:Hitoshi Suzuki:HS1200.
681094411911191 1.000- 0.000Panthera onca vwf gene for von Willebrand factor, partial cds, specimen_voucher: personal:Hitoshi Suzuki:HS1200.
7179660185527 0.883- 0.000Panthera onca isolate Pon43 mitochondrial control region, partial sequence.
894048609610 1.000- 0.000Panthera tigris amoyensis specimen-voucher Pta01 cytochrome b (cytb) gene, partial cds; mitochondrial.
9020047336337 0.997- 0.000Panthera pardus specimen-voucher Jinqianbao control region, partial sequence; mitochondrial.
9377461255916990 0.913- 0.000Panthera tigris mitochondrion, complete genome.
1012077353841044 0.538- 0.000Panthera tigris altaica clone DBH0902 NADH dehydrogenase subunit 2 (NADH2) gene, complete cds; mitochondrial.
1308419409554 0.904- 0.000Panthera tigris tigris specimen-voucher Menghu1 control region, partial sequence; mitochondrial.

  1 Maximum Alignment Density
  2 "Q" alignment comparison score between default Clustal W and Muscle alignments
  3 Level of resolution (consensus fork index) of the strict consensus tree built from the two bootstrap trees from Clustal W and Muscle alignments.
  4 Trees are unrooted majority rule consensus trees from 'fast bootstrap parsimony' algorithm in PAUP* 4.0 using default ClustalW alignments. Expect performance to deteriorate with low MAD or Q scores, large number of taxa, and high sequence divergence (largely owing to alignment problems). Only trees for (taxon) phylogenetically informative clusters with fewer than 1000 sequences are generated.


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