Cluster set at subtree whose root is 'unclassified Felidae'

Click here to see taxon by cluster Data Availability Matrix
Cluster IDParent clusterTaxIDsGIsLminLmaxMAD1Q2Tcfi3Defline of longest sequenceTree4
023311132132 1.000- 0.00012S rRNA [Smilodon fatalis=saber-toothed cats, Mitochondrial, 132 nt].-
1022270388 0.848- 0.000Smilodon populator isolate ZMA20.041 16S ribosomal RNA gene, partial sequence; mitochondrial.-
2722136143 0.976- 0.000Miracinonyx trumani isolate NTC43093 ATPase 8 (ATP8) gene, partial cds; mitochondrial.-
3122297300 0.995- 0.000Miracinonyx trumani isolate NTC43093 NADH dehydrogenase subunit 5 (ND5) gene, partial cds; mitochondrial.-
45422393394 0.999- 0.000Smilodon populator isolate ZMA20.041 12S ribosomal RNA gene, partial sequence; mitochondrial.-
51033291457 0.758- 0.000Homotherium serum isolate CMN46442 cytochrome b (cytb) gene, partial cds; mitochondrial.-
636311145145 1.000- 0.000Miracinonyx trumani isolate NTC43093 12S ribosomal RNA gene, partial sequence; nuclear copy of mitochondrial sequence.-

  1 Maximum Alignment Density
  2 "Q" alignment comparison score between default Clustal W and Muscle alignments
  3 Level of resolution (consensus fork index) of the strict consensus tree built from the two bootstrap trees from Clustal W and Muscle alignments.
  4 Trees are unrooted majority rule consensus trees from 'fast bootstrap parsimony' algorithm in PAUP* 4.0 using default ClustalW alignments. Expect performance to deteriorate with low MAD or Q scores, large number of taxa, and high sequence divergence (largely owing to alignment problems). Only trees for (taxon) phylogenetically informative clusters with fewer than 1000 sequences are generated.


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