Cluster set at subtree whose root is 'Caesalpinioideae'

Click here to see taxon by cluster Data Availability Matrix
Cluster IDParent clusterTaxIDsGIsLminLmaxMAD1Q2Tcfi3Defline of longest sequenceTree4
003203645992377 0.578- 0.000Cercidium andicola voucher R. Fortunato 7638 (BAB, BH) tRNA-Lys (trnK) gene, intron; and maturase K-like (matK) gene, complete sequence; chloroplast.
111471893481495 0.813- 0.000Dialium sp. McKey C91-11 ribulose 1,5-bisphosphate carboxylase-oxygenase large subunit (rbcL) gene, choloroplast gene encoding chloroplast protein, partial cds.
446611141737 0.828- 0.000Bauhinia sp. Doyle s.n. 18S ribosomal RNA gene, partial sequence.
52558210073391103 0.680- 0.000Moullava spicata chloroplast tRNA-Leu (trnL) gene, partial sequence; trnL-trnF intergenic spacer region, complete sequence; and tRNA-Phe (trnF) gene, partial sequence.-
252433824491225 0.584- 0.000Brownea ariza clone A4 FLO/LFY-like protein-like gene, partial sequence.
2626145161693908 0.950- 0.000Senna obtusifolia chloroplast rpS16 gene, partial intron.
292941123289530 0.767- 0.000Caesalpinia pannosa isolate PANNCarter2124 psbA gene and psbA-trnH intergenic spacer, partial sequence; plastid.
30301015379475 0.969- 0.000Bauhinia siqueiraei voucher SM26583 RNA polymerase beta subunit (rpoB) gene, partial cds; chloroplast.
31311433469714 0.799- 0.000Senna reticulata voucher LDV3116 RNA polymerase beta subunit (rpoC1) gene, partial cds; chloroplast.
34235110191481934 0.798- 0.000Aphanocalyx microphyllus subsp. compactus 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
35351380609720 0.922- 0.000Caesalpinia eriostachys acetyl-CoA carboxylase carboxyltransferase beta subunit-like (accD) gene, partial sequence; accD-psaI intergenic spacer, complete sequence; and psaI protein (psaI) gene, partial cds; plastid.
37379397701962 0.908- 0.000Gleditsia triacanthos chloroplast rpL16 gene, partial intron.
38384876580695 0.909- 0.000Caesalpinia sappan isolate C4 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 26S ribosomal RNA gene, partial sequence.
43431013170261 0.925- 0.000Schizolobium sp. ACTZ-2009 cytochrome c heme attachment protein gene, partial cds; chloroplast.
4545131720952101 0.999- 0.000Gymnocladus chinensis NADH dehydrogenase-like protein (ndhF) gene, chloroplast gene encoding chloroplast protein, partial cds.
4646131912051295 0.958- 0.000Gleditsia triacanthos ribosomal protein 16 large subunit (rpl16) gene, chloroplast gene encoding chloroplast protein, partial cds.
50506612691362 0.971- 0.000Delonix regia retrotransposon Ty1/copia-like, partial sequence.
646399612752 0.910- 0.000Cassia javanica subsp. nodosa voucher PS1365MT01 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
65642020796837 0.966- 0.000Bauhinia pentandra voucher EAC 34765 tRNA-Glu (trnE) gene, partial sequence; trnE-trnT intergenic spacer, complete sequence; and tRNA-Thr (trnT) gene, partial sequence; chloroplast.
71701819633867 0.865- 0.000Chamaecrista absus var. absus isolate FS7417 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence.
72713437385825 0.780- 0.000Chamaecrista brachystachya isolate FS1615 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence.
848356592662 0.915- 0.000Bauhinia acuminata 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, complete sequence; and 5.8S ribosomal RNA gene, partial sequence.
858466932982 0.984- 0.000Bauhinia variegata atpB-rbcL intergenic spacer region, complete sequence and ribulose 1,5-bisphosphate carboxylase/oxygenase large subunit (rbcL) gene, partial cds; chloroplast gene for chloroplast product.
87865470503854 0.723- 0.000Bauhinia guianensis voucher NL110013 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1 and 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence.
1111104416921807 0.969- 0.000Julbernardia globiflora voucher 4961 maturase (matR) gene, partial cds; mitochondrial.
1421411014687752 0.970- 0.000Cercis chingii NADH dehydrogenase subunit F (ndhF) gene, partial cds; chloroplast gene for chloroplast product.
184181152711131353 0.883- 0.000Berlinia confusa clone B20 FLO/LFY-like protein gene, partial cds.
1981955462289500 0.881- 0.000Prioria copaifera voucher STRI:BCI 240923 photosystem II protein D1 (psbA) gene, partial cds; psbA-trnH intergenic spacer, complete sequence; and tRNA-His gene, partial sequence; chloroplast.

  1 Maximum Alignment Density
  2 "Q" alignment comparison score between default Clustal W and Muscle alignments
  3 Level of resolution (consensus fork index) of the strict consensus tree built from the two bootstrap trees from Clustal W and Muscle alignments.
  4 Trees are unrooted majority rule consensus trees from 'fast bootstrap parsimony' algorithm in PAUP* 4.0 using default ClustalW alignments. Expect performance to deteriorate with low MAD or Q scores, large number of taxa, and high sequence divergence (largely owing to alignment problems). Only trees for (taxon) phylogenetically informative clusters with fewer than 1000 sequences are generated.


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