Cluster set at subtree whose root is 'Glaucocystophyceae'

Click here to see taxon by cluster Data Availability Matrix
Cluster IDParent clusterTaxIDsGIsLminLmaxMAD1Q2Tcfi3Defline of longest sequenceTree4
0-1112961296 1.000- 0.000Cyanophora paradoxa sigA mRNA for RNA polymerase sigma factor, complete cds.-
1-1112841284 1.000- 0.000Cyanophora paradoxa sigB mRNA for RNA polymerase sigma factor, complete cds.-
2-1115171517 1.000- 0.000Cyanophora paradoxa CpFtsZ-cy mRNA for plastid division protein FtsZ, complete cds.-
3-2418352514 0.876- 0.000Cyanophora paradoxa clone chhsp9042 Hsp90 gene, partial cds, alternatively spliced.-
4-4430503205 0.973- 0.000Gloeochaete wittrockiana strain SAG 46.84 28S ribosomal RNA gene, partial sequence.
5-11579579 1.000- 0.000Cyanophora paradoxa putative mitochondrial division protein (FtsZ) gene, partial cds; nuclear gene for mitochondrial product.-
6-1124582458 1.000- 0.000Cyanophora paradoxa KCBP-like kinesis gene, partial cds.-
7-4517171816 0.980- 0.000G.nostochinearum gene for 16S-like ribosomal RNA.
8-2108381599 0.845- 0.000Cyanophora paradoxa cptua2 alpha-tubulin gene, partial cds.-
9-11655655 1.000- 0.000Cyanophora paradoxa Shwachman-Bodian-Diamond protein-like protein mRNA, partial cds.-
10-1130003000 1.000- 0.000Cyanophora paradoxa strain CCAC 0074 DNA-dependent RNA polymerase II largest subunit (RPB1) mRNA, partial cds.-
11-1119671967 1.000- 0.000Cyanophora paradoxa strain CCAC 0074 DNA-dependent RNA polymerase II largest subunit (RPB1) gene, partial cds.-
12-1114421442 1.000- 0.000Cyanophora paradoxa glyceraldehyde-3-phosphate dehydrogenase subunit A (gapA) mRNA, complete cds.-
13-11558558 1.000- 0.000Cyanophora paradoxa plastid soluble inorganic pyrophosphatase protein precursor (sPPase) mRNA, partial cds; nuclear gene for plastid product.-
14-11942942 1.000- 0.000Cyanophora paradoxa cytosolic glucose-6-phosphate isomerase (GPI) mRNA, partial cds.-
15-1128542854 1.000- 0.000Cyanophora paradoxa cytosolic glucose-6-phosphate isomerase (GPI) gene, partial cds.-
16-11445445 1.000- 0.000Cyanophora paradoxa cytosolic 3-hydroxy-3-methylglutaryl-CoA synthase (HMGS) mRNA, partial cds.-
17-11274274 1.000- 0.000Cyanophora paradoxa cytosolic 3-hydroxy-3-methylglutaryl-CoA reductase (HMGR) mRNA, partial cds.-
18-11256256 1.000- 0.000Cyanophora paradoxa cytosolic mevalonate kinase (MK) mRNA, partial cds.-
19-11301301 1.000- 0.000Cyanophora paradoxa cytosolic mevalonate-5-diphosphate decarboxylase (MDD) mRNA, partial cds.-
20-1117791779 1.000- 0.000Cyanophora paradoxa granule-bound starch synthase mRNA, complete cds.-
21-1116691669 1.000- 0.000Cyanophora paradoxa soluble starch synthase mRNA, partial cds.-
22-1113171317 1.000- 0.000Cyanophora paradoxa starch phosphorylase mRNA, partial cds.-
23-11123123 1.000- 0.000Cyanophora paradoxa chloroplast beta-phycocyanin, 3' coding sequence.-
24-1113361336 1.000- 0.000C.parodoxa cyanelle allophycocyanin (AP) alpha and beta subunit apoprotein genes.-
25-11961961 1.000- 0.000Cyanophora paradoxa 16S ribosomal RNA gene, partial sequence; tRNA-Ile and tRNA-Ala genes, complete sequence; and 23S ribosomal RNA gene, partial sequence; cyanelle genes for cyanelle products.-
26-11667667 1.000- 0.000Cyanophora paradoxa Glu- and Leu-tRNA genes.-
27-1164686468 1.000- 0.000Cyanophora paradoxa ribosomal protein l22 (rpl22) gene, partial cds; ribosomal protein s3 (rps3), ribosomal protein l16 (rpl16), ribosomal protein l7 (rpl7), ribosomal protein l14 (rpl14), ribosomal protein l5 (rpl5), ribosomal protein s8 (rps8), ribosomal protein l6 (rpl6), ribosomal protein l18 (rpl18), ribosomal protein s5 (rps5), and ribosomal protein secY (secY) genes, complete cds; and ORF gene, partial cds.-
28-12119119 1.000- 0.000C.paradoxa cellular 5S ribosomal RNA.-
29-12118118 1.000- 0.000C.paradoxa cyanellar 5S ribosomal RNA.-
30-1110761076 1.000- 0.000C.paradoxa cyanelle cytochrome b-559 (psbE, psbF, psbI, and psbJ) genes, complete cds.-
31-1211111277 0.935- 0.000C.paradoxa cyanelle ferredoxin (petF) and ribosomal protein S10 (rps10; rpsJ) genes, complete cds, and elongation factor Tu (tufA) gene, 5' end.-
32-11528528 1.000- 0.000Cyanophora paradoxa ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit gene, partial cds; and ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit gene, complete cds; cyanelle genes for cyanelle products.-
33-1127362736 1.000- 0.000Cyanophora paradoxa prephytoene pyrophosphate dehydrogenase (crtE) gene, complete cds; tRNA-Ser (tRNA-Ser) gene, complete sequence; and quinolinate synthetase (nadA) gene, complete cds; cyanelle.-
34-1121532153 1.000- 0.000Cyanophora paradoxa cyanelle transfer RNA-Asn (trnN) gene, 3' end; transfer RNA-Leu (trnL) gene; FA/FB (psaC) gene, complete cds; ORF243, complete cds; ORF162, 3' end.-
35-2312031524 0.860- 0.000Cyanophora paradoxa actin gene, partial cds.-
36-11282282 1.000- 0.000Cyanophora paradoxa chloroplast beta-phycocyanin gene (pcyB) 5'-region.-
37-11126126 1.000- 0.000Cyanophora paradoxa chloroplast alpha-phycocyanin gene (pcyA) 5'-region.-
38-11229229 1.000- 0.000Chloroplast Cyanophora paradoxa 5'region alpha-allophycocyanin gene (apcA).-
39-118787 1.000- 0.000Cyanophora paradoxa chloroplast beta-allophycocyanin gene (apcB) 5'-region.-
40-11234234 1.000- 0.000Cyanophora paradoxa plastid gene for transfer RNA-Ser (GGA).-
41-11217217 1.000- 0.000Cyanophora paradoxa plastid gene for transfer RNA-Gly (GCC).-
42-229321450 0.821- 0.000Cyanophora paradoxa cyanelle psbA gene.-
43-1111481148 1.000- 0.000Cyanophora paradoxa cyanelle genes rpl5, rps8 and rpl6 for ribosomal protein L5, ribosomal protein S8 and ribosomal protein L6.-
44-11478478 1.000- 0.000Cyanophora paradoxa cyanelle petG gene for subunit V of the plastoquinol-plastocyanin (cytochrome b6/f) oxidoreductase.-
45-11295295 1.000- 0.000Cyanophora paradoxa cyanelle psbK gene for Photosystem II component.-
46-11890890 1.000- 0.000Cyanophora paradoxa cyanelle DNA for ribosomal protein L35 and ribosomal protein L20.-
47-1131203120 1.000- 0.000Cyanophora paradoxa rps18, rps19, rpl2, rpl3, rpl33 genes and rpl22 (partial) and ORF102.-
48-11821821 1.000- 0.000Cyanophora paradoxa cyanelle DNA for tRNA Ser and tRNA Gly and ORF65.-
49-11783783 1.000- 0.000Cyanophora paradoxa cyanelle apcC gene for gamma-allophycocyanin (allop. 2A).-
50-1123872387 1.000- 0.000Cyanophora paradoxa cyanelle rps12, rps7 and tufA genes for ribosomal proteins S12, S7 and elongation factor Tu.-
51-1115271527 1.000- 0.000C. paradoxa rbcL gene for ribulose 1,5-bisphosphate carboxylase/oxygenase (EC 4.1.1.39).-
52-1112951295 1.000- 0.000C.paradoxa mRNA for ferredoxin-NADH+ oxidoreductase precursor.-
53-3315141527 0.997- 0.000G.nostochinearum plastid 16S rRNA gene.-
54-11717717 1.000- 0.000C.paradoxa DNA for rnpB, trnR and trnH genes.-
55-1114001400 1.000- 0.000C.paradoxa mRNA for HSP70 protein.-
56-11710710 1.000- 0.000C.paradoxa mRNA for ribosomal protein L13a.-
57-11624624 1.000- 0.000C.paradoxa cyanelle DNA fragment for polymerase rpoC1 subunit.-
58-11486486 1.000- 0.000Cyanophora paradoxa ribosomal protein L21E (rpl21) mRNA, complete cds.-
59-1115501550 1.000- 0.000Cyanophora paradoxa elongation translation factor 1 alpha mRNA, complete cds.-
60-1115131513 1.000- 0.000Cyanophora paradoxa beta 1 tubulin (tubB1) mRNA, complete cds.-
61-11846846 1.000- 0.000Cyanophora paradoxa vacuolar ATP synthase subunit B (vatB) gene, partial cds.-
62-11474474 1.000- 0.000Cyanophora paradoxa motor protein mRNA, partial cds.-
63-11626626 1.000- 0.000Cyanophora paradoxa partial mRNA for 40S ribosomal protein S11.-
64-11540540 1.000- 0.000Cyanophora paradoxa mRNA for ribosomal protein L31.-
65-11519519 1.000- 0.000Cyanophora paradoxa partial mRNA for putative 60S ribosomal protein L17.-
66-11386386 1.000- 0.000Cyanophora paradoxa mRNA for hypothetical protein, partial.-
67-11806806 1.000- 0.000Cyanophora paradoxa mRNA for 60S ribosomal protein L6 (YL 16 like).-
68-11564564 1.000- 0.000Cyanophora paradoxa mRNA for 60S acidic ribosomal protein P2.-
69-11560560 1.000- 0.000Cyanophora paradoxa mRNA for 40s ribosomal protein S12.-
70-11332332 1.000- 0.000Cyanophora paradoxa mRNA for 40S ribosomal protein S21.-
71-11958958 1.000- 0.000Cyanophora paradoxa mRNA for photosystem I reaction centre subunit II precursor.-
72-1114181418 1.000- 0.000Cyanophora paradoxa partial cbbA gene for fructose-1,6-bisphosphat aldolase.-
73-1138863886 1.000- 0.000Cyanophora paradoxa acly gene, exons 1-12.-
74-1120882088 1.000- 0.000Cyanophora paradoxa mRNA for ATP citrate lyase (acly gene).-
75-11402402 1.000- 0.000Cyanophora paradoxa mRNA for 40S ribosomal protein S19.-
76-11306306 1.000- 0.000Cyanophora paradoxa partial mRNA for 40S ribosomal protein S9.-
77-11447447 1.000- 0.000Cyanophora paradoxa partial mRNA for 60S ribosomal protein L7.-
78-1125952595 1.000- 0.000Cyanophora paradoxa mRNA for putative transketolase precursor (tktC gene).-
79-11836836 1.000- 0.000Cyanophora paradoxa partial mRNA for ubiquinol-cytochrome C reductase iron-sulfur subunit precursor (risp gene).-
80-11552552 1.000- 0.000Cyanophora paradoxa mRNA for cytochrome c6 (petJ gene).-
81-1113981398 1.000- 0.000Cyanophora paradoxa mRNA for ALA dehydratase (hemB gene).-
82-11939939 1.000- 0.000Cyanophora paradoxa partial mRNA for NAD-dependent glyderaldehyde-3-phosphate dehydrogenase (GAPDH) (gapC gene).-
83-11515515 1.000- 0.000Cyanophora paradoxa mRNA for core linker Lc7.8 (apcC gene).-
84-11702702 1.000- 0.000Cyanophora paradoxa mRNA for photosystem II 12 kDa extrinsic protein precursor (psbU gene).-
85-11701701 1.000- 0.000Cyanophora paradoxa partial mRNA for ATP synthase A chain precursor (atpI-1 gene).-
86-11372372 1.000- 0.000Cyanophora paradoxa partial mRNA for ATP synthase A chain precursor (atpI-2 gene).-
87-12864874 0.994- 0.000Cyanophora paradoxa mRNA for Rieske iron-sulphur protein (petC-2 gene).-
88-1113381338 1.000- 0.000Cyanophora paradoxa mRNA for oxygen-evolving enhancer protein 1 (psbO gene).-
89-1111201120 1.000- 0.000Cyanophora paradoxa clone cperf2-16 eukaryotic translation elongation factor 2 (EEF2) gene, partial cds.-
90-1112781278 1.000- 0.000Cyanophora paradoxa clone cpeef2-19 eukaryotic translation elongation factor 2 (EEF2) gene, partial cds.-
91-1113211321 1.000- 0.000Cyanophora paradoxa gnd mRNA for 6-phosphogluconate dehydrogenase, partial cds, strain: NIES-547.-
92-1110001000 1.000- 0.000Cyanophora paradoxa partial mRNA for putative ATP/ADP translocase (ntt1 gene).-
93-2211731177 0.998- 0.000Glaucocystis nostochinearum hsp70-E mRNA for luminal binding protein BiP, partial cds.-
94-1112721272 1.000- 0.000Cyanophora paradoxa opsin (OPS1) gene, partial cds.-
95-1210431175 0.944- 0.000Cyanophora paradoxa opsin 2 (OPS2) gene, complete cds.-
96-1113951395 1.000- 0.000Gloeochaete wittrockiana psbO mRNA for 33kDa oxygen evolving protein of photosystem II, complete cds.-
97-1113221322 1.000- 0.000Gloeochaete wittrockiana gnd mRNA for 6-phosphogluconate dehydrogenase, partial cds, strain: SAG 46.84.-
98-2230654586 0.834- 0.000Cyanoptyche gloeocystis cyanelle 16S rRNA gene (partial), 23S rRNA gene (partial), tRNA-Ile gene, tRNA-Ala gene and ITS1, strain SAG 34.90.-
99-11235235 1.000- 0.000Glaucocystis nostochinearum tRNA-Leu (trnL) gene, intron; chloroplast.-
100-1113951395 1.000- 0.000Glaucocystis nostochinearum strain UTEX B1929 photosystem I P700 chlorophyll a apoprotein A1 (psaA) gene, partial cds; chloroplast.-
101-1112661266 1.000- 0.000Glaucocystis nostochinearum strain UTEX B1929 photosystem I P700 chlorophyll a apoprotein A2 (psaB) gene, partial cds; chloroplast.-
102-1110021002 1.000- 0.000Glaucocystis nostochinearum strain UTEX B1929 photosystem II CP43 chlorophyll apoprotein (psbC) gene, partial cds; chloroplast.-
103-11887887 1.000- 0.000Glaucocystis nostochinearum strain UTEX B1929 photosystem II protein D2 (psbD) gene, partial cds; chloroplast.-
104-1116651665 1.000- 0.000Glaucocystis nostochinearum RNA polymerase IV largest subunit (RPB1) mRNA, partial cds.-
105-1199369936 1.000- 0.000Glaucocystis nostochinearum strain UTEX-B 1929 DNA-dependent RNA polymerase II largest subunit (RPB1) gene, complete cds.-
106-11486486 1.000- 0.000Glaucocystis nostochinearum diaminopimelate decarboxylase-like protein mRNA, partial cds.-
107-148381450 0.859- 0.000Glaucocystis nostochinearum clone gntub2 beta tubulin gene, partial cds.-
108-1111861186 1.000- 0.000Glaucocystis nostochinearum hsp70-C mRNA for heat shock protein Hsp70, partial cds.-
109-11241241 1.000- 0.000Cyanoptyche gloeocystis tRNA-Leu (trnL) gene, intron; chloroplast.-
110-1113341334 1.000- 0.000Cyanoptyche gloeocystis gnd mRNA for 6-phosphogluconate dehydrogenase, partial cds, strain: SAG 34.90.-

  1 Maximum Alignment Density
  2 "Q" alignment comparison score between default Clustal W and Muscle alignments
  3 Level of resolution (consensus fork index) of the strict consensus tree built from the two bootstrap trees from Clustal W and Muscle alignments.
  4 Trees are unrooted majority rule consensus trees from 'fast bootstrap parsimony' algorithm in PAUP* 4.0 using default ClustalW alignments. Expect performance to deteriorate with low MAD or Q scores, large number of taxa, and high sequence divergence (largely owing to alignment problems). Only trees for (taxon) phylogenetically informative clusters with fewer than 1000 sequences are generated.


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