Cluster set at subtree whose root is 'Plasmodium (Vinckeia)'

Click here to see taxon by cluster Data Availability Matrix
Cluster IDParent clusterTaxIDsGIsLminLmaxMAD1Q2Tcfi3Defline of longest sequenceTree4
1457607614 0.992- 0.000Plasmodium chabaudi haplotype R16 cytochrome b gene, partial cds; mitochondrial.
21014248951005 0.979- 0.000Plasmodium yoelii yoelii strain 17X cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial.
10111426499641 0.825- 0.000Plasmodium chabaudi caseinolytic protease C (clpC) gene, partial cds; apicoplast.
111255186206 0.979- 0.000Plasmodium vinckei strain R8 adenylosuccinate lyase (asl) gene, partial cds.
1861525234410 0.803- 0.000Plasmodium yoelii merozoite surface protein-1 gene, partial cds.
196251352986409 0.855- 0.000P.chabaudi major merozoite surface antigen mRNA, complete cds.
216445546585 0.963- 0.000Plasmodium yoelii yoelii dihydrofolate reductase (DHFR) gene, partial cds.
2265449751009 0.990- 0.000Plasmodium vinckei vinckei (clones pRV(25,30)) cell division cycle protein (cdc2) gene, intron.
34551259485961 0.998- 0.000Plasmodium yoelii cytochrome c oxidase subunit 1 (cox1) gene, complete cds; and cytochrome b (cob) gene, complete cds.
3879558881054 0.969- 0.000Plasmodium vinckei fructose 1,6-bisphosphate aldolase gene, partial cds.
44414229961655 0.639- 0.000Plasmodium chabaudi adami strain 408XZ cytochrome b (cytb) gene, partial cds; mitochondrial.
5090449801097 0.932- 0.000Plasmodium yoelii yoelii GTP cyclohydrolase I (gtp-ch) gene, complete cds.
513478392067 0.800- 0.000Plasmodium chabaudi 18S ribosomal RNA gene, complete sequence.
54938136421260 0.572- 0.000Plasmodium yoelii mRNA for 21 kDa ookinete surface protein, complete cds.
57961320602987 0.652- 0.000Plasmodium vinckei lentum strain 194ZZ cysteine protease gene, partial cds.
58971319518518 1.000- 0.000Plasmodium yoelii nigeriensis strain N67 dihydrofolate reductase gene, partial cds.
59141218650674 0.992- 0.000Plasmodium yoelii strain EL TufA gene, partial cds; apicoplast.
60981319549649 0.978- 0.000Plasmodium yoelii killicki isolate 193L ORF470 gene, partial cds; apicoplast.
652195512721395 0.945- 0.000Plasmodium vinckei lentum circumsporozoite protein (CS) gene, complete cds.
67221712489815 0.633- 0.000Plasmodium yoelii nigeriensis isolate N67 RNA polymerase II (Rbp1) gene, partial cds.
96250515619765 0.851- 0.000Plasmodium yoelii merozoite surface protein 4/5 (MSP4/5) gene, complete cds.
15931251218102926 0.795- 0.000Plasmodium yoelii yoelii pyebl gene for erythrocyte-binding-like protein, partial cds, strain: 33X(Pr3).

  1 Maximum Alignment Density
  2 "Q" alignment comparison score between default Clustal W and Muscle alignments
  3 Level of resolution (consensus fork index) of the strict consensus tree built from the two bootstrap trees from Clustal W and Muscle alignments.
  4 Trees are unrooted majority rule consensus trees from 'fast bootstrap parsimony' algorithm in PAUP* 4.0 using default ClustalW alignments. Expect performance to deteriorate with low MAD or Q scores, large number of taxa, and high sequence divergence (largely owing to alignment problems). Only trees for (taxon) phylogenetically informative clusters with fewer than 1000 sequences are generated.


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