Cluster set at subtree whose root is 'unclassified eukaryotes'

Click here to see taxon by cluster Data Availability Matrix
Cluster IDParent clusterTaxIDsGIsLminLmaxMAD1Q2Tcfi3Defline of longest sequenceTree4
0-182311401878 0.940- 0.000Unidentified protist 56059 18S ribosomal RNA gene and internal transcribed spacer 1, partial sequence.
1-1114301430 1.000- 0.000Phaeomonas parva ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit (rbcL) gene, partial cds; chloroplast gene for chloroplast product.-
2-4411531318 0.922- 0.000Telonema antarcticum partial tuba gene for alpha-tubulin, exons 1-2.
3-448831314 0.877- 0.000Trimastix marina beta tubulin gene, partial cds.
4-1119491949 1.000- 0.000Trimastix marina cytosolic heat shock protein 90 (HSP90) gene, partial cds.-
5-1120142014 1.000- 0.000Trimastix marina cytosolic heat shock protein 70 (HSP70) gene, partial cds.-
6-1113301330 1.000- 0.000Trimastix pyriformis ATCC50562 guanine deaminase-like protein mRNA, partial cds.-
7-22608804 0.878- 0.000Trimastix pyriformis ribosomal protein L7A mRNA, complete cds.-
8-11515515 1.000- 0.000Populus tremula x Populus tremuloides/Amanita muscaria mixed EST library EST clone 0004.-
9-11530530 1.000- 0.000Populus tremula x P. tremuloides/Amanita muscaria mixed EST library EST, clone ptamabc210001f10.-
10-1114571457 1.000- 0.000Mikrocytos mackini small subunit ribosomal RNA gene, partial sequence.-
11-11951951 1.000- 0.000Mikrocytos roughleyi 18S ribosomal RNA gene, partial sequence.-
12-1118761876 1.000- 0.000Pseudodidymium cryptomastigophorum 18S ribosomal RNA gene, partial sequence.-
13-3317241763 0.985- 0.000Limanda limanda X-cell parasite 18S ribosomal RNA gene, partial sequence.-
14-1127462746 1.000- 0.000Multicilia marina small subunit ribosomal RNA gene, partial sequence.-
18-1111201120 1.000- 0.000Trimastix pyriformis membrane carrier 3 mRNA, partial cds.-
20-1120342034 1.000- 0.000Trimastix pyriformis chaperonin 60 mRNA, complete cds.-
21-1117751775 1.000- 0.000Trimastix pyriformis glycine cleavage system protein P1 mRNA, partial cds.-
23-11609609 1.000- 0.000Trimastix pyriformis glycine cleavage system protein H mRNA, complete cds.-
24-1111941194 1.000- 0.000Trimastix pyriformis lipoyltransferase mRNA, partial cds.-
25-1117061706 1.000- 0.000Trimastix pyriformis processing peptidase alpha subunit mRNA, complete cds.-
26-1152245224 1.000- 0.000Trimastix pyriformis pyruvate:ferredoxin oxidoreductase gene, complete cds.-
28-1110261026 1.000- 0.000Trimastix pyriformis TOM40 mRNA, partial cds.-
29-1213171622 0.906- 0.000Trimastix pyriformis glycine cleavage system L-protein mRNA, complete cds.-
30-1213171435 0.959- 0.000Trimastix pyriformis Fe-hydrogenase 3 mRNA, complete cds.-
31-11982982 1.000- 0.000Trimastix pyriformis Fe-hydrogenase 2 mRNA, complete cds.-
32-1116871687 1.000- 0.000Trimastix pyriformis heat shock protein 90 mRNA, partial cds.-
33-1114031403 1.000- 0.000Trimastix pyriformis heat shock protein 70 mRNA, partial cds.-
34-11665665 1.000- 0.000Trimastix pyriformis Shwachman-Bodian-Diamond protein-like protein mRNA, partial cds.-
35-1112711271 1.000- 0.000Trimastix pyriformis translation elongation factor 1 alpha (EF-1alpha) gene, partial cds.-
36-1122982298 1.000- 0.000Trimastix pyriformis translation elongation factor 2 (EF-2) gene, partial cds.-
37-11216216 1.000- 0.000Trimastix pyriformis alpha amylase-like protein mRNA, partial cds.-
38-11375375 1.000- 0.000Trimastix pyriformis diaminopimelate decarboxylase-like protein mRNA, partial cds.-
39-12537612 0.939- 0.000Trimastix pyriformis beta xylosidase-like protein A mRNA, partial cds.-
40-11696696 1.000- 0.000Trimastix pyriformis glycerate dehydrogenase-like protein mRNA, partial cds.-
41-1113711371 1.000- 0.000Trimastix pyriformis hexokinase mRNA, partial cds.-
42-1116471647 1.000- 0.000Trimastix pyriformis glucose-6-phosphate isomerase (GPI) mRNA, partial cds.-
43-11972972 1.000- 0.000Trimastix pyriformis fructose-1,6-bisphopshate aldolase (FBA) mRNA, complete cds.-
44-11771771 1.000- 0.000Trimastix pyriformis triosephosphate isomerase (TPI) mRNA, complete cds.-
45-1110561056 1.000- 0.000Trimastix pyriformis glyceraldehyde-3-phopshate dehydrogenase (GAPDH3) mRNA, complete cds.-
46-1112061206 1.000- 0.000Trimastix pyriformis phosphoglycerate kinase (PGK) mRNA, complete cds.-
47-1117041704 1.000- 0.000Trimastix pyriformis 2,3-bisphosphoglycerate-independent phosphoglyerate mutase (iPGM) mRNA, complete cds.-
48-1113231323 1.000- 0.000Trimastix pyriformis enolase mRNA, complete cds.-
49-1114821482 1.000- 0.000Trimastix pyriformis pyruvate kinase (PK) mRNA, complete cds.-
50-1126372637 1.000- 0.000Trimastix pyriformis pyruvate phosphate dikinase (PPDK) mRNA, complete cds.-
51-11523523 1.000- 0.000Mikrocytos sp. DFO-2002 18S ribosomal RNA gene, partial sequence.-
52-1158695869 1.000- 0.000Breviata anathema DNA-dependent RNA polymerase II largest subunit (RPB1) gene, partial cds.-
53-11966966 1.000- 0.000Breviata anathema chaperonin mRNA, partial cds.-
54-23796932 0.903- 0.000Breviata anathema actin gene, partial cds.-
55-2216711711 0.988- 0.000Telonema antarcticum partial hsp90 gene for heat shock protein 90.-
56-22186207 0.949- 0.000Unidentified microheliozoan polyubiquitin (pub) gene, partial cds.-
57-1113421342 1.000- 0.000Metromonas simplex strain HFCC68 28S ribosomal RNA gene, partial sequence.-
58-11568568 1.000- 0.000Eukaryote sp. CRIB-09 18S ribosomal RNA gene, partial sequence.-
59-11530530 1.000- 0.000Eukaryote sp. C61 partial 18S rRNA gene, isolate C61.-
60-11482482 1.000- 0.000Soil flagellate WFMR-2007 18S ribosomal RNA gene, partial sequence.-
61-44476567 0.934- 0.000Unicellular eukaryote sp. A17 18S ribosomal RNA gene, partial sequence.
62-11485485 1.000- 0.000Unicellular eukaryote sp. A14 18S ribosomal RNA gene, partial sequence.-
63-33632717 0.942- 0.000Unicellular eukaryote sp. A23 18S ribosomal RNA gene, partial sequence.-

  1 Maximum Alignment Density
  2 "Q" alignment comparison score between default Clustal W and Muscle alignments
  3 Level of resolution (consensus fork index) of the strict consensus tree built from the two bootstrap trees from Clustal W and Muscle alignments.
  4 Trees are unrooted majority rule consensus trees from 'fast bootstrap parsimony' algorithm in PAUP* 4.0 using default ClustalW alignments. Expect performance to deteriorate with low MAD or Q scores, large number of taxa, and high sequence divergence (largely owing to alignment problems). Only trees for (taxon) phylogenetically informative clusters with fewer than 1000 sequences are generated.


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