Cluster set at subtree whose root is 'Neocallimastigomycota'

Click here to see taxon by cluster Data Availability Matrix
Cluster IDParent clusterTaxIDsGIsLminLmaxMAD1Q2Tcfi3Defline of longest sequenceTree4
0-26547696 0.909- 0.000Neocallimastix frontalis mRNA for hydrogenosomal adenylate kinase hdgAKL2.2, partial.-
1-2313372467 0.752- 0.000Neocallimastix frontalis hydrogenase (HydL2) mRNA, complete cds.-
2-249741115 0.931- 0.000Neocallimastix patriciarum ADP/ATP carrier (AAC) mRNA, complete cds; nuclear gene for hydrogenosomal product.-
3-121149208817 0.638- 0.000Orpinomyces sp. NIANP59 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
4-11778778 1.000- 0.000Neocallimastix frontalis heat shock protein 60 (HSP60.1) mRNA, partial cds.-
5-337782071 0.674- 0.000Neocallimastix patriciarum heat shock protein 60 precursor (Hsp60) mRNA, complete cds.-
6-8234462338 0.490- 0.000N.patriciarum mRNA for xylanase A.
7-2212001278 0.969- 0.000Neocallimastix patriciarum succinyl-CoA synthetase, alpha subunit (scsA) mRNA, complete cds.-
8-1118881888 1.000- 0.000Neocallimastix patriciarum strain J11 CelA (celA) mRNA, complete cds.-
9-5913491925 0.814- 0.000Neocallimastix patriciarum cellobiohydrolase precursor (celA) mRNA, complete cds.
10-2227342803 0.988- 0.000Neocallimastix frontalis pyruvate formate lyase mRNA, partial cds.-
11-1112161216 1.000- 0.000Neocallimastix frontalis pyruvate formate lyase activating enzyme mRNA, complete cds.-
12-1111531153 1.000- 0.000Neocallimastix frontalis mitochondrial ornithine carbamoyltransferase mRNA, complete cds; nuclear gene for mitochondrial product.-
13-7915771783 0.942- 0.000Cyllamyces aberensis isolate AFTOL-ID 846 18S small subunit ribosomal RNA gene, partial sequence.
14-2224403962 0.808- 0.000Neocallimastix frontalis RNA polymerase II largest subunit (RPB1) gene, partial cds.-
15-1233023386 0.988- 0.000Neocallimastix frontalis RNA polymerase II second largest subunit (RPB2) gene, RPB2-2 allele, partial cds.-
16-1120522052 1.000- 0.000N.frontalis phosphoenolpyruvate carboxykinase (pepck) mRNA, complete cds.-
17-5610865502 0.469- 0.000Piromyces equi mRNA for endoglucanase 5A (cel5A).
18-1123442344 1.000- 0.000Neocallimastix frontalis malic enzyme precursor mRNA, complete cds.-
19-1119681968 1.000- 0.000N.frontalis enolase gene.-
20-1118381838 1.000- 0.000N.frontalis enolase gene, promotor region.-
21-22675969 0.848- 0.000N.frontalis mRNA for endoxylanase.-
22-2214491555 0.966- 0.000Neocallimastix patriciarum succinyl-CoA synthetase, beta subunit (scsB) mRNA, complete cds.-
23-11886886 1.000- 0.000Neocallimastix frontalis iron hydrogenase precursor (hyd) mRNA, partial cds; nuclear gene for hydrogenosomal product.-
24-22957957 1.000- 0.000Neocallimastix frontalis acetylxylan esterase (estsk1-6) gene, partial cds.-
25-11342342 1.000- 0.000Neocallimastix frontalis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, complete sequence; and 5.8S ribosomal RNA gene, partial sequence.-
26-11360360 1.000- 0.000Neocallimastix frontalis strain YAK11 internal transcribed spacer 1 and 5.8S ribosomal RNA gene, partial sequence.-
27-11398398 1.000- 0.000Neocallimastix frontalis strain YAK11 internal transcribed spacer 1, partial sequence.-
28-47495751 0.869- 0.000Neocallimastix sp. YQ1 18S ribosomal RNA gene, partial sequence.
29-1114181418 1.000- 0.000Neocallimastix patriciarum endo-1,4-beta-xylanase (xynS20) mRNA, complete cds.-
30-11961961 1.000- 0.000Neocallimastix patriciarum endo-1,3-1,4-beta-glucanase (lic6) mRNA, complete cds.-
31-1128192819 1.000- 0.000xynB=Xylanase B [Neocallimastix patriciarum, mRNA, 2819 nt].-
32-1115411541 1.000- 0.000Neocallimastix patriciarum acetylxylan esterase (bnaI) mRNA, complete cds.-
33-1111781178 1.000- 0.000Neocallimastix patriciarum acetylxylan esterase (bnaII) mRNA, partial cds.-
34-1113751375 1.000- 0.000Neocallimastix patriciarum acetylxylan esterase (bnaIII) mRNA, complete cds.-
35-3415321966 0.900- 0.000Orpinomyces joyonii cellulase (celB29) mRNA, complete cds.-
36-1120562056 1.000- 0.000Neocallimastix patriciarum endo-1,4-beta-xylanase (xynC) gene, complete cds.-
37-1123212321 1.000- 0.000Neocallimastix patriciarum heat shock protein 70 precursor (Hsp70) mRNA, complete cds.-
38-1124212421 1.000- 0.000Neocallimastix patriciarum endo-1,4-beta-xylanase (xynS20E) mRNA, complete cds.-
39-33934988 0.976- 0.000Anaeromyces sp. W-98 lichenase (licB) mRNA, licB-B allele, complete cds.-
40-1318622336 0.887- 0.000Piromyces sp. mRNA for mannanase A.-
41-1125382538 1.000- 0.000Piromyces sp. mRNA for xylanase A.-
42-2415581722 0.953- 0.000Piromyces rhizinflata exocellobiohydrolase precursor Cbh6 (cbh6) mRNA, complete cds.-
43-1111421142 1.000- 0.000Piromyces rhizinflatus 1,4-beta-D-glucan-cellobiohydrolase (cbhYW23-4) mRNA, partial cds.-
44-1115941594 1.000- 0.000Piromyces rhizinflata exocellobiohydrolase precursor (chb29) mRNA, complete cds.-
45-1115041504 1.000- 0.000Piromyces rhizinflata exocellobiohydrolase Cbh120 (cbh120) mRNA, complete cds.-
46-11272272 1.000- 0.000Neocallimastix LM-2 DNA AT-rich region.-
47-3512101920 0.887- 0.000Piromyces sp. E2 exoglucanase Cel6A (cel6A) gene, complete cds.-
48-11295295 1.000- 0.000Piromyces sp. E2 cellulosomal glycoside hydrolase family 6 exoglucanase Cel6E (cel6E) gene, partial cds.-
49-1127372737 1.000- 0.000Piromyces sp. E2 beta-glucosidase precursor (cel3A) mRNA, complete cds.-
50-1130243024 1.000- 0.000Piromyces sp. E2 aldehyde/alcohol dehydrogenase (adhE) mRNA, complete cds.-
51-1116271627 1.000- 0.000Piromyces sp. E2 cellulosomal serpin precursor (celpin) mRNA, complete cds.-
52-1115951595 1.000- 0.000Piromyces sp. E2 cellulosomal serpin precursor (celpin) gene, partial cds.-
53-12600604 0.997- 0.000Piromyces sp. E2 mRNA for formate C-acetyltransferase, clone pd6.-
54-12139166 0.919- 0.000Piromyces sp. E2 mRNA for formate C-acetyltransferase, clone pPFLh104.-
55-12522534 0.989- 0.000Piromyces sp. E2 mRNA for formate C-acetyltransferase, clone pc7.-
56-11351351 1.000- 0.000Piromyces sp. E2 mRNA for formate C-acetyltransferase, clone pPFLh114.-
57-1113231323 1.000- 0.000Piromyces sp. E2 mRNA for ketol-acid reductoisomerase.-
58-11359359 1.000- 0.000Piromyces sp. E2 mRNA for formate C-acetyltransferase, clone pPFLh112.-
59-1126502650 1.000- 0.000Piromyces sp. E2 mRNA for aconitate hydratase.-
60-1112301230 1.000- 0.000Piromyces sp. E2 mRNA for malate dehydrogenase.-
61-11344344 1.000- 0.000Piromyces sp. E2 mRNA for formate C-acetyltransferase, clone pPFLh140.-
62-11862862 1.000- 0.000Piromyces sp. E2 mRNA for isocitrate dehydrogenase (NADP+).-
63-11355355 1.000- 0.000Piromyces sp. E2 mRNA for glyceraldehyde 3-phosphate dehydrogenase (GAPDH), partial.-
64-11318318 1.000- 0.000Piromyces sp. E2 mRNA for BGP-independent phosphoglyceromutase, partial.-
65-11328328 1.000- 0.000Piromyces sp. E2 mRNA for hexokinase, partial.-
66-11306306 1.000- 0.000Piromyces sp. E2 mRNA for 6-phosphofructokinase, partial.-
67-11260260 1.000- 0.000Piromyces sp. E2 mRNA for phosphoglycerate kinase, partial.-
68-1124382438 1.000- 0.000Piromyces sp. E2 heat shock protein 60 (E2HSP60.1) mRNA, complete cds.-
69-2226662742 0.986- 0.000Piromyces sp. E2 cellulase Cel48A precursor (cel48A) mRNA, complete cds.-
70-1227462804 0.990- 0.000Piromyces sp. E2 cellulase Cel9A precursor (cel9A) mRNA, complete cds.-
71-2423063242 0.794- 0.000Piromyces sp. E2 clone lambda11 beta-glucosidase Cel1C gene, complete cds.-
72-1112181218 1.000- 0.000Piromyces sp. E2 clone lambda11 beta-glucosidase Cel1D gene, partial cds.-
73-1117081708 1.000- 0.000Piromyces sp. E2 clone 64 mannanase ManA and mannanase ManB genes, partial cds.-
74-11860860 1.000- 0.000Piromyces sp. E2 clone 25 cel6B-cel6C non-coding intergenic region.-
75-1117481748 1.000- 0.000Piromyces sp. E2 clone 25 cellobiohydrolase Cel6C gene, partial cds.-
76-11420420 1.000- 0.000Piromyces sp. E2 clone 31 feruloyl esterase FaeA gene, partial cds.-
77-1116771677 1.000- 0.000Piromyces sp. E2 clone 29 beta-glucosidase family 3 protein Cel3A gene, partial cds.-
78-1125852585 1.000- 0.000Piromyces sp. E2 cellulosomal glycoside hydrolase family 9 endoglucanase Cel9B gene, partial cds.-
79-11400400 1.000- 0.000Piromyces sp. E2 clone 31 feruloyl esterase FaeA gene, 3' UTR and non-coding intergenic region.-
80-11328328 1.000- 0.000Piromyces sp. E2 mRNA for putative alcohol dehydrogenase/acetaldehyde dehydrogenase, partial 328 BP.-
81-11285285 1.000- 0.000Piromyces sp. E2 mRNA for putative alcohol dehydrogenase/acetaldehyde dehydrogenase, partial 285 BP.-
82-1110451045 1.000- 0.000Piromyces sp. E2 hsp70.1 gene for putative heat shock protein 70, partial.-
83-1110481048 1.000- 0.000Piromyces sp. E2 hsp70.2 gene for putative heat shock protein 70, partial.-
84-2213141669 0.894- 0.000Piromyces sp. E2 mRNA for xylose isomerase (xylA gene).-
85-1120412041 1.000- 0.000Piromyces sp. E2 mRNA for D-xylulokinase (xylB gene).-
86-1116461646 1.000- 0.000Piromyces equi non-catalytic protein 1 (ncp1) mRNA, complete cds.-
87-1120402040 1.000- 0.000Piromyces equi cinnamoyl ester hydrolase EstA (estA) mRNA, complete cds.-
88-1114181418 1.000- 0.000Piromyces equi mRNA for endoglucanase 45A (cel45A).-
89-2215971610 0.996- 0.000Piromyces sp. BTrP1 1,4-beta-glucanase (Cel6G) mRNA, partial cds.-
90-3332304868 0.779- 0.000Orpinomyces sp. OUS1 partial 18S rRNA gene, ITS1, 5.8S rRNA gene, ITS2 and partial 28S rRNA, clone V5-1.-
91-1111781178 1.000- 0.000Neocallimastix sp. GE13 isolate AFTOL-ID 638 elongation factor 1-alpha (EF1-alpha) gene, partial cds.-
92-11431431 1.000- 0.000Neocallimastix sp. CF 17 18S ribosomal RNA gene, partial sequence.-
93-22334463 0.861- 0.000Caecomyces sp. AF-CTS-EMCe1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, region.-
94-11691691 1.000- 0.000Caecomyces communis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.-
95-1133753375 1.000- 0.000Orpinomyces joyonii endoglucanase precursor (CelA) gene, complete cds.-
96-127081031 0.843- 0.000Orpinomyces sp. PC-2 cyclophilin B precursor (CyPB) gene, complete cds.-
97-1115851585 1.000- 0.000Orpinomyces sp. PC-2 1,4-beta-D-glucan-cellobiohydrolase (celD) mRNA, complete cds.-
98-11765765 1.000- 0.000Orpinomyces sp. PC-2 1,4-beta-D-glucan-cellobiohydrolase (celG) mRNA, partial cds.-
99-1110671067 1.000- 0.000Orpinomyces sp. PC-2 acetyl xylan esterase A (AxeA) mRNA, complete cds.-
100-1116451645 1.000- 0.000Orpinomyces sp. PC-2 feruloyl esterase A (faeA) mRNA, partial cds.-
101-1119241924 1.000- 0.000Orpinomyces sp. PC-2 mannanase ManA (manA) mRNA, complete cds.-
102-11853853 1.000- 0.000Orpinomyces sp. PC-2 endo-glucanase CelJ (celJ) mRNA, complete cds.-
103-11248248 1.000- 0.000Orpinomyces sp. OUS1 partial dyn1 gene for putative dynein heavy chain.-
104-11240240 1.000- 0.000Orpinomyces sp. OUS1 partial pfl1 gene for putative formate acetyltransferase.-
105-11466466 1.000- 0.000Orpinomyces sp. OUS1 partial xynY gene for putative endo-1,4-beta-xylanase Y precursor.-
106-11376376 1.000- 0.000Orpinomyces sp. OUS1 partial gpt1 gene for putative UDP-glucose:glycoprotein glucosyltransferase 2 precursor, exons 1-2.-
107-11143143 1.000- 0.000Orpinomyces sp. OUS1 partial mnn2 gene for putative UDP-N-acetylglucosamine transporter, exon 1.-
108-1120252025 1.000- 0.000Orpinomyces sp. OUS1 partial mdh1 gene for putative malate dehydrogenase, exons 1-5.-
109-11575575 1.000- 0.000Orpinomyces sp. OUS1 partial nic96 gene for putative nuclear pore protein.-
110-11128128 1.000- 0.000Orpinomyces sp. OUS1 partial abcT3 gene for putative ABC transporter proteins.-
111-1116711671 1.000- 0.000Orpinomyces sp. OUS1 partial pepD2 gene for putative aminoacyl-histidine dipeptidase.-
112-1111411141 1.000- 0.000Orpinomyces sp. OUS1 partial azr1 gene for putative 5-azacytidine resistance protein.-
113-11609609 1.000- 0.000Orpinomyces sp. OUS1 partial xynB gene for putative xylanase B.-
114-14588609 0.987- 0.000Orpinomyces sp. OUS1 partial IGS and partial 18S rRNA gene, clone E2-31 (T7).-
115-11210210 1.000- 0.000Orpinomyces sp. OUS1 partial 18S rRNA gene, clone E2-31 (SP6).-
116-159741070 0.981- 0.000Orpinomyces sp. OUS1 partial 18S rRNA gene and partial IGS, clone V4-1.-
117-1135263526 1.000- 0.000Orpinomyces sp. OUS1 partial ORF for hypothetical protein, clone E2-53.-
118-11277277 1.000- 0.000Orpinomyces sp. OUS1 partial ORF for hypothetical protein, clone E2-16.-
119-11233233 1.000- 0.000Orpinomyces sp. OUS1 partial ORF for hypothetical protein, clone E2-21.-
120-11534534 1.000- 0.000Orpinomyces sp. OUS1 partial ORF for hypothetical protein, clone E4-17.-
121-11488488 1.000- 0.000Orpinomyces sp. OUS1 partial ORF for hypothetical protein, clone E3-1, 5' end.-
122-11476476 1.000- 0.000Orpinomyces sp. OUS1 partial ORF for hypothetical protein, clone E3-1, 3' end.-
123-11259259 1.000- 0.000Orpinomyces sp. OUS1 partial ORF for hypothetical protein, clone E2-77.-
124-11315315 1.000- 0.000Orpinomyces sp. OUS1 partial ORF for hypothetical protein, clone E2-39.-
125-11163163 1.000- 0.000Orpinomyces sp. OUS1 partial ORF for hypothetical protein, clone E2-37.-
126-11180180 1.000- 0.000Orpinomyces sp. OUS1 partial ORF for hypothetical protein, clone V1-10.-
127-11353353 1.000- 0.000Orpinomyces sp. OUS1 partial ORF for hypothetical protein, clone V3-40, 5' end.-
128-11330330 1.000- 0.000Orpinomyces sp. OUS1 partial ORF for hypothetical protein, clone V3-40, 3' end.-
129-12546586 0.966- 0.000Orpinomyces sp. OUS1 partial ORF for hypothetical protein, clone E1-10, 5' end.-
130-12589608 0.984- 0.000Orpinomyces sp. OUS1 partial ORF for hypothetical protein, clone E1-10, 3' end.-
131-11399399 1.000- 0.000Orpinomyces sp. OUS1 partial ORF for hypothetical protein, clone E2-31-2.-
132-11934934 1.000- 0.000Orpinomyces sp. OUS1 partial ORF for hypothetical protein, clone V3-7.-
133-11159159 1.000- 0.000Orpinomyces sp. OUS1 partial ORF for hypothetical protein, clone E3-27-4.-
134-11197197 1.000- 0.000Orpinomyces sp. OUS1 partial ORF for hypothetical protein, clone E3-27-5.-
135-11145145 1.000- 0.000Orpinomyces sp. OUS1 partial ORF for hypothetical protein, clone E3-27-6.-
136-11239239 1.000- 0.000Orpinomyces sp. OUS1 partial ORF for hypothetical protein, clone E3-27-1.-
137-1115371537 1.000- 0.000Orpinomyces sp. OUS1 partial putative corrupted gypsy-like retrotransposon, exons 1-6, clone E2-58.-
138-11309309 1.000- 0.000Orpinomyces sp. OUS1 partial putative gypsy-like retrotransposon, clone V1-22.-
139-1124062406 1.000- 0.000Orpinomyces sp. OUS1 partial putative gypsy-like retrotransposon, clone E2-13.-
140-12281281 1.000- 0.000Orpinomyces sp. OUS1 partial putative gypsy-like retrotransposon, clone E1-2.-
141-12575605 0.975- 0.000Orpinomyces sp. OUS1 partial putative gypsy-like retrotransposon, exon 1, clone V2-9.-
142-11473473 1.000- 0.000Orpinomyces sp. OUS1 partial putative gypsy-like retrotransposon, exon 1, clone E4-2.-
143-128931094 0.908- 0.000Orpinomyces sp. OUS1 partial putative gypsy-like retrotransposon, exon 1, clone E2-50.-
144-1113311331 1.000- 0.000Orpinomyces sp. OUS1 partial putative gypsy-like retrotransposon, exon 1, clone E2-101.-
145-11666666 1.000- 0.000Orpinomyces sp. GMLF19 18S ribosomal RNA gene, partial sequence.-
146-22287427 0.836- 0.000Piromyces sp. AF-CTS-BBP1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, region.-
147-22297319 0.966- 0.000Anaeromyces sp. GA-01-CIRG 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, complete sequence; and 5.8S ribosomal RNA gene, partial sequence.-
148-1117951795 1.000- 0.000Anaeromyces sp. W-98 cellulase (celA) mRNA, complete cds.-
149-11277277 1.000- 0.000Orpinomyces sp. GO 02 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, complete sequence; and 5.8S ribosomal RNA gene, partial sequence.-
150-11456456 1.000- 0.000Orpinomyces sp. FCT 2 1,4-beta-D-glucan-4-glucanohydrolase (celE) mRNA, partial cds.-

  1 Maximum Alignment Density
  2 "Q" alignment comparison score between default Clustal W and Muscle alignments
  3 Level of resolution (consensus fork index) of the strict consensus tree built from the two bootstrap trees from Clustal W and Muscle alignments.
  4 Trees are unrooted majority rule consensus trees from 'fast bootstrap parsimony' algorithm in PAUP* 4.0 using default ClustalW alignments. Expect performance to deteriorate with low MAD or Q scores, large number of taxa, and high sequence divergence (largely owing to alignment problems). Only trees for (taxon) phylogenetically informative clusters with fewer than 1000 sequences are generated.


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