Cluster set at subtree whose root is 'Neocallimastigomycota'

Click here to see taxon by cluster Data Availability Matrix
Cluster IDParent clusterTaxIDsGIsLminLmaxMAD1Q2Tcfi3Defline of longest sequenceTree4
3-121149208817 0.638- 0.000Orpinomyces sp. NIANP59 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
6-8234462338 0.490- 0.000N.patriciarum mRNA for xylanase A.
9-5913491925 0.814- 0.000Neocallimastix patriciarum cellobiohydrolase precursor (celA) mRNA, complete cds.
13-7915771783 0.942- 0.000Cyllamyces aberensis isolate AFTOL-ID 846 18S small subunit ribosomal RNA gene, partial sequence.
17-5610865502 0.469- 0.000Piromyces equi mRNA for endoglucanase 5A (cel5A).
28-47495751 0.869- 0.000Neocallimastix sp. YQ1 18S ribosomal RNA gene, partial sequence.

  1 Maximum Alignment Density
  2 "Q" alignment comparison score between default Clustal W and Muscle alignments
  3 Level of resolution (consensus fork index) of the strict consensus tree built from the two bootstrap trees from Clustal W and Muscle alignments.
  4 Trees are unrooted majority rule consensus trees from 'fast bootstrap parsimony' algorithm in PAUP* 4.0 using default ClustalW alignments. Expect performance to deteriorate with low MAD or Q scores, large number of taxa, and high sequence divergence (largely owing to alignment problems). Only trees for (taxon) phylogenetically informative clusters with fewer than 1000 sequences are generated.

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