Cluster set at subtree whose root is 'Blastocladiomycota'

Click here to see taxon by cluster Data Availability Matrix
Cluster IDParent clusterTaxIDsGIsLminLmaxMAD1Q2Tcfi3Defline of longest sequenceTree4
0-12562580 0.984- 0.000Blastocladiella emersonii isolate AFTOL-ID 302 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence.-
1-11903903 1.000- 0.000Blastocladiella emersonii strain CBS 56170 actin gene, partial cds.-
2-6146551667 0.722- 0.000Blastocladiella emersonii beta-tubulin mRNA, complete cds.
3-12189972346 0.744- 0.000Coelomomyces stegomyiae 18S small subunit ribosomal RNA gene, partial sequence.
4-11525525 1.000- 0.000Blastocladiella emersonii centrin 1 mRNA, complete cds.-
5-11504504 1.000- 0.000Blastocladiella emersonii centrin 3 mRNA, complete cds.-
6-6831333625 0.891- 0.000B.emersonii DNA for 28S ribosomal RNA gene.
7-55429507 0.969- 0.000Catenophlyctis sp. JEL298 isolate AFTOL-ID 36 elongation factor 1-alpha-like protein (EFL) gene, partial cds.
8-1120892089 1.000- 0.000Blastocladiella emersonii heat shock protein Hsp70-3 mRNA, complete cds.-
9-11776776 1.000- 0.000Blastocladiella emersonii heat shock protein Hsp70-2 mRNA, partial cds.-
10-11716716 1.000- 0.000Blastocladiella emersonii heat shock protein Hsp70-4 mRNA, partial cds.-
11-11949949 1.000- 0.000Blastocladiella emersonii heat shock protein Hsp70-5 mRNA, partial cds.-
12-1119441944 1.000- 0.000Blastocladiella emersonii heat shock protein Hsp70-6 mRNA, complete cds.-
13-1117491749 1.000- 0.000Blastocladiella emersonii heat shock protein Hsp70-7 mRNA, partial cds.-
14-11479479 1.000- 0.000Blastocladiella emersonii heat shock protein Hsp70-8 mRNA, partial cds.-
15-1121112111 1.000- 0.000Blastocladiella emersonii heat shock protein Hsp70-9 mRNA, complete cds.-
16-1112311231 1.000- 0.000Blastocladiella emersonii heat shock protein Hsp70-10 mRNA, partial cds.-
17-1115421542 1.000- 0.000Blastocladiella emersonii propionyl coenzyme A carboxylase mRNA, partial cds.-
18-1139333933 1.000- 0.000Blastocladiella emersonii heat shock protein 90 kDa (hsp90) gene, complete cds.-
19-4423043203 0.911- 0.000Allomyces macrogynus RNA polymerase II largest subunit (RPB1) gene, partial cds.
20-1116251625 1.000- 0.000Blastocladiella emersonii elongation factor alpha-like protein mRNA, complete cds.-
21-1114341434 1.000- 0.000Blastocladiella emersonii enolase mRNA, complete cds.-
22-11775775 1.000- 0.000Blastocladiella emersonii methylmalonyl-CoA-epimerase mRNA, partial cds.-
23-11693693 1.000- 0.000Blastocladiella emersonii methylmalonyl-CoA-mutase mRNA, partial cds.-
24-11663663 1.000- 0.000Blastocladiella emersonii cob(I)alamin adenosyltransferase mRNA, partial cds.-
25-11690690 1.000- 0.000Blastocladiella emersonii amidohydrolase domain containing 1 protein mRNA, partial cds.-
26-11764764 1.000- 0.000Blastocladiella emersonii Rbj-like protein mRNA, partial cds.-
27-11707707 1.000- 0.000Blastocladiella emersonii putative urocanate hydratase mRNA, partial cds.-
28-1124402440 1.000- 0.000Blastocladiella emersonii Hsp90B mRNA, complete cds.-
29-1213372299 0.791- 0.000Blastocladiella emersonii cAMP-dependent protein kinase, complete cds.-
30-1131343134 1.000- 0.000Blastocladiella emersonii heat shock protein (hsp70) gene, complete cds.-
31-1215642494 0.814- 0.000Blastocladiella emersonii cAMP-dependent protein kinase regulatory subunit gene, complete cds.-
32-1122352235 1.000- 0.000Blastocladiella emersonii mitochondrial processing peptidase beta subunit 1 (BeMPP1) gene, complete cds.-
33-1122732273 1.000- 0.000Blastocladiella emersonii mitochondrial processing peptidase alpha subunit gene, complete cds.-
34-11206206 1.000- 0.000B.emersonii DNA for 5.8S ribosomal RNA gene.-
35-1237474736 0.896- 0.000Blastocladiella emersonii P-Type cation-transporting ATPase (PAT2) gene, complete cds.-
36-1115081508 1.000- 0.000Blastocladiella emersonii calmodulin (CaM) gene, complete cds.-
37-11955955 1.000- 0.000Blastocladiella emersonii guanylyl cyclase 1 mRNA, partial cds.-
38-1111851185 1.000- 0.000Blastocladiella emersonii guanylyl cyclase 2 mRNA, partial cds.-
39-11903903 1.000- 0.000Blastocladiella emersonii guanylyl cyclase 3 mRNA, partial cds.-
40-1114551455 1.000- 0.000Blastocladiella emersonii cGMP phosphodiesterase mRNA, complete cds.-
41-11118118 1.000- 0.000Blastocadiella simplex (water mold) 5S ribosomal RNA.-
42-11504504 1.000- 0.000Allomyces macrogynus alcohol dehydrogenase-like protein mRNA, partial cds.-
43-3417522689 0.904- 0.000Allomyces macrogynus RNA polymerase II second largest subunit (RPB2) gene, RPB2-2 allele, partial cds.-
44-2211892707 0.720- 0.000Allomyces macrogynus ATPase complex subunit 6 (atp6) gene, mitochondrial gene encoding mitochondrial protein, complete cds.-
45-1147364736 1.000- 0.000Allomyces macrogynus NADH dehydrogenase subunit 5 (nad5) gene, complete cds; and nad5 gene, partial cds; mitochondrial genes for mitochondrial products.-
46-1117231723 1.000- 0.000Allomyces macrogynus small subunit ribosomal RNA (rns) gene, mitochondrial gene encoding mitochondrial rRNA subunit, complete sequence.-
47-12846857 0.994- 0.000Allomyces arbuscula strain PL113 28S ribosomal RNA gene, partial sequence.-
48-22574601 0.978- 0.000Allomyces arbuscula isolate AFTOL-ID 300 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence.-
49-1141414141 1.000- 0.000Allomyces arbuscula mitochondrial genome, partial sequence.-
50-1214121811 0.890- 0.000Allomyces arbuscula mca II gene for calcium-dependent metacaspase CDP II, strain Burma 1Db.-
51-1110111011 1.000- 0.000Allomyces moniliformis lys2 gene for aminoadipate reductase, partial cds.-
52-11639639 1.000- 0.000Catenaria anguillulae strain JEL194 18S ribosomal RNA gene, partial sequence.-
53-1120982098 1.000- 0.000Coelomomyces stegomyiae isolate AFTOL-ID 18 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence.-
54-1134863486 1.000- 0.000Coelomomyces stegomyiae isolate AFTOL-ID 18 28S ribosomal RNA gene, partial sequence.-
55-1116291629 1.000- 0.000Coelomomyces stegomyiae isolate AFTOL-ID 18 RNA polymerase II largest subunit (RPB1) gene, partial cds.-
56-1225863241 0.899- 0.000Coelomomyces stegomyiae isolate AFTOL-ID 18 RNA polymerase II second largest subunit precursor (RPB2) gene, partial cds.-
57-1134513451 1.000- 0.000Coelomomyces stegomyiae RNA polymerase II largest subunit (RPB1) gene, partial cds.-
58-1110051005 1.000- 0.000Allomyces sp. YT-TT1 RPB1 gene for DNA-dependent RNA polymerase II largest subunit, partial cds.-
59-11692692 1.000- 0.000Physoderma maydis isolate AFTOL-ID 19 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.-
60-1112321232 1.000- 0.000Physoderma maydis isolate AFTOL-ID 19 elongation factor 1-alpha (EF1-alpha) gene, partial cds.-
61-1123622362 1.000- 0.000Physoderma maydis isolate AFTOL-ID 19 RNA polymerase II largest subunit (RPB1) gene, partial cds.-
62-1121042104 1.000- 0.000Physoderma maydis isolate AFTOL-ID 19 RNA polymerase II second largest subunit (RPB2) gene, partial cds.-
63-11635635 1.000- 0.000Catenophlyctis sp. JEL298 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence.-
64-11657657 1.000- 0.000Microallomyces sp. CR74 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence.-
65-1110961096 1.000- 0.000Catenomyces sp. JEL342 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence.-

  1 Maximum Alignment Density
  2 "Q" alignment comparison score between default Clustal W and Muscle alignments
  3 Level of resolution (consensus fork index) of the strict consensus tree built from the two bootstrap trees from Clustal W and Muscle alignments.
  4 Trees are unrooted majority rule consensus trees from 'fast bootstrap parsimony' algorithm in PAUP* 4.0 using default ClustalW alignments. Expect performance to deteriorate with low MAD or Q scores, large number of taxa, and high sequence divergence (largely owing to alignment problems). Only trees for (taxon) phylogenetically informative clusters with fewer than 1000 sequences are generated.


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