Cluster set at subtree whose root is 'Chytridiomycota'

Click here to see taxon by cluster Data Availability Matrix
Cluster IDParent clusterTaxIDsGIsLminLmaxMAD1Q2Tcfi3Defline of longest sequenceTree4
1-202298519995 0.803- 0.000Phlyctochytrium planicorne strain JEL47 28S ribosomal RNA gene, partial sequence.
2-1521807562620 0.486- 0.000Spizellomyces punctatus isolate AFTOL-ID 182 18S small subunit ribosomal RNA gene, partial sequence.
3-464721404693 0.679- 0.000Karlingiomyces sp. JEL93 isolate AFTOL-ID 629 28S ribosomal RNA gene, partial sequence.
10-3739380929 0.611- 0.000Spizellomyces kniepii strain UGA-F 18S ribosomal RNA gene, partial sequence.
13-9119941458 0.866- 0.000Powellomyces variabilis alpha-tubulin (atub) gene, partial cds.
17-12176951837 0.773- 0.000Harpochytrium sp. JEL94 beta-tubulin 1 (btub1) gene, partial cds.
18-14147011603 0.767- 0.000Monoblepharella sp. M15 isolate AFTOL-ID 25 elongation factor 1-alpha (EF1-alpha) gene, partial cds.
39-55571633 0.934- 0.000Powellomyces sp. JEL95 isolate AFTOL-ID 32 elongation factor 1-alpha-like protein (EFL) gene, partial cds.
140-77490588 0.920- 0.000Rhizophydium sp. BR1 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence.
145-1919636884 0.851- 0.000Rhizophydium sp. PL-149A internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence.
149-57761795 0.971- 0.000Rhizophydium pollinis-pini isolate ARG069 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence.
152-67607681 0.945- 0.000Rhizophydiales sp. ARG010 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence.
153-4547562613 0.930- 0.000Boothiomyces sp. ARG040 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence.
154-66675716 0.984- 0.000Rhizophydiales sp. ARG070 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence.
165-77566856 0.742- 0.000Kappamyces sp. PL-118 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence.

  1 Maximum Alignment Density
  2 "Q" alignment comparison score between default Clustal W and Muscle alignments
  3 Level of resolution (consensus fork index) of the strict consensus tree built from the two bootstrap trees from Clustal W and Muscle alignments.
  4 Trees are unrooted majority rule consensus trees from 'fast bootstrap parsimony' algorithm in PAUP* 4.0 using default ClustalW alignments. Expect performance to deteriorate with low MAD or Q scores, large number of taxa, and high sequence divergence (largely owing to alignment problems). Only trees for (taxon) phylogenetically informative clusters with fewer than 1000 sequences are generated.


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