Cluster set at subtree whose root is 'Podospora'

Click here to see taxon by cluster Data Availability Matrix
Cluster IDParent clusterTaxIDsGIsLminLmaxMAD1Q2Tcfi3Defline of longest sequenceTree4
0012138341336 0.735- 0.000Podospora fibrinocaudata strain TRTC48343 28S large subunit ribosomal RNA gene, partial sequence.
114989459608 0.896- 0.000Podospora fimiseda 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
2277437504 0.954- 0.000Podospora appendiculata strain IFO 8549 beta-tubulin gene, partial sequence.
332220222157 0.969- 0.000P.curvicolla EF1-alpha gene.-
4411206206 1.000- 0.000P.curvicolla mitochondrial cox1 gene (intron 1; partial).-
5511415415 1.000- 0.000P.curvicolla mitochondrial cytb gene (intron 2).-
6611249249 1.000- 0.000P.curvicolla mitochondrial small subunit rRNA gene (partial).-
7711140140 1.000- 0.000P.curvicolla mitochondrial LSU rRNA gene.-
881130743074 1.000- 0.000P.curvicolla mitochondrial partial nad5 gene.-
9911884884 1.000- 0.000P.curvicolla mitochondrial tRNA-[Leu,Gln,His,Met] genes.-
101011628628 1.000- 0.000P.curvicolla mitochondrial tRNA-Asn and partial nd1 genes.-
11111210121881 0.769- 0.000Podospora curvicolla mitochondrial partial cytb gene for cytochrome b and intronic sequence encoding I-PcI endonuclease and hypothetical protein.-
12121110441044 1.000- 0.000Podospora curvicolla strain NRRL 25778 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.-
13131116051605 1.000- 0.000P.comata mitochondrial DNA for ND1 gene (strain T).-
14141126832683 1.000- 0.000P.comata mitochondrial DNA for ND1 gene (strain ATCC36713).-
15152325393361 0.887- 0.000P.comata mitochondrial cox1 gene.-
16161414463488 0.977- 0.000Podospora communis glyceraldehyde 3-phosphate dehydrogenase (gpd) gene, partial cds.
171788484563 0.950- 0.000Podospora sp. XSD-39 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
1818449691043 0.968- 0.000Podospora fimiseda strain CBS 990.96 beta-tubulin gene, partial cds.
19192217451787 0.988- 0.000Podospora fimiseda strain CBS 990.96 RNA polymerase II subunit (RPB2) gene, partial cds.-
20191112031203 1.000- 0.000Podospora decipiens strain CBS 258.64 RNA polymerase II subunit (RPB2) gene, partial cds.-
21191112001200 1.000- 0.000Podospora fibrinocaudata strain TRTC48343 RNA polymerase II subunit (RPB2) gene, partial cds.-
222011320320 1.000- 0.000Podospora sp. P047 internal transcribed spacer 1 and 5.8S ribosomal RNA gene, partial sequence.-

  1 Maximum Alignment Density
  2 "Q" alignment comparison score between default Clustal W and Muscle alignments
  3 Level of resolution (consensus fork index) of the strict consensus tree built from the two bootstrap trees from Clustal W and Muscle alignments.
  4 Trees are unrooted majority rule consensus trees from 'fast bootstrap parsimony' algorithm in PAUP* 4.0 using default ClustalW alignments. Expect performance to deteriorate with low MAD or Q scores, large number of taxa, and high sequence divergence (largely owing to alignment problems). Only trees for (taxon) phylogenetically informative clusters with fewer than 1000 sequences are generated.


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