Cluster set at subtree whose root is 'Rhizaria'

Click here to see taxon by cluster Data Availability Matrix
Cluster IDParent clusterTaxIDsGIsLminLmaxMAD1Q2Tcfi3Defline of longest sequenceTree4
0-19388241043 0.852- 0.000Borelis schlumbergeri partial 18S rRNA gene, isolate 365, clone 16.
1-415315932744 0.726- 0.000Borelis schlumbergeri 18S rRNA gene, isolate 191.
2-83155490545 0.951- 0.000Amphisorus hemprichii partial 18S rRNA gene, isolate EL61_1329j.
3-631586191497 0.657- 0.000Allogromia sp. A clone Alo159_5 actin type 2 gene, partial cds.
4-34691561108 0.355- 0.000Cercomonas ATCC50316 isolate pub4 polyubiquitin gene, partial cds.
9-11473981059 0.773- 0.000G.siphonifera SSU rRNA gene (partial).
12-3333426453 0.973- 0.000Orbulina sp. SSU rRNA gene, partial (isolate A495).
14-9149851788 0.685- 0.000R.filosa mRNA for beta-tubulin, clone b472.
17-2288503673785 0.313- 0.000Nonionella labradorica isolate 3600 small subunit ribosomal RNA gene, complete sequence.
23-7710791554 0.855- 0.000Bulimina marginata RNA polymerase II largest subunit (RPB1) gene, partial cds.
35-8464061499 0.451- 0.000G.mediterranensis gene for 28S ribosomal RNA.
46-914393495 0.909- 0.000Heterostegina depressa partial 28S rRNA gene, isolate 282.
47-9148681439 0.869- 0.000Chlorarachnion CCMP240 16S ribosomal RNA gene, chloroplast gene for chloroplast RNA, complete sequence.
50-233811031410 0.864- 0.000Nonionella labradorica isolate 4836 small subunit ribosomal RNA gene, partial sequence.
51-4171364635 0.643- 0.000A.beccarii LSU rRNA gene (clone DEB5).
53-4179561050 0.965- 0.000Ammonia tepida clone Z14 5 small subunit ribosomal RNA gene, partial sequence.
64-644923994 0.955- 0.000Bulimina sp. BMK002 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
67-4249581033 0.963- 0.000Chilostomella ovoidea clone J59-16 small subunit ribosomal RNA gene, partial sequence.
77-2829267288 0.969- 0.000Psammosphaera sp. 1090 partial 18S rRNA gene, isolate 1090.
80-2628440712 0.793- 0.000Margaritella sp. 28S rRNA gene.
85-91311041616 0.785- 0.000R.filosa mRNA for alpha-tubulin, clone a111.
95-1414314361 0.904- 0.000Hippocrepinella sp. A335 partial 18S rRNA gene, isolate A335.
103-44323326 0.995- 0.000Hemisphaerammina sp. 1084 partial 18S rRNA gene, isolate 1084.
117-4045666853026 0.539- 0.000Plasmodiophora brassicae small subunit ribosomal RNA gene.
125-66247304 0.962- 0.000Bonamia sp. Ca Base 22 121504B.22 small subunit ribosomal RNA gene, partial sequence.
126-563340715 0.709- 0.000Bonamia sp. ex Ostrea stentina clone C small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence.
147-242618413618 0.876- 0.000Cercozoa sp. YPF501 gene for nuclear large subunit ribosomal RNA, partial sequence.
259-8138411302 0.805- 0.000Cercomonas ATCC50316 beta-tubulin (btub) gene, partial cds.
308-532258887 0.631- 0.000P.graminis partial 18S rRNA gene, 5.8S rRNA gene and two internal transcribed spacers, strain F51.
334-39159306412 0.909- 0.000Marteilia refringens clone G_Oy20.2 internal transcribed spacer 1, partial sequence.
343-2121577696 0.907- 0.000Cercomonas kiaerdammane strain NY12 5.8S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
345-252611951334 0.963- 0.000Bodomorpha sp. HFCC92 28S ribosomal RNA gene, partial sequence.
346-44524550 0.981- 0.000Cercomonas gigantica strain NY1 5.8S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
350-739576661 0.987- 0.000Massisteria sp. diva strain HFCC385 18S ribosomal RNA gene and internal transcribed spacer 1, partial sequence.
351-1717195369 0.882- 0.000Eocercomonas sp. PT208-20 18S ribosomal RNA gene and internal transcribed spacer 1, partial sequence.
354-99537567 0.970- 0.000Paracercomonas compacta strain xt198 5.8S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
355-66196203 0.975- 0.000Paracercomonas sp. P111 internal transcribed spacer 1, partial sequence.
356-1616645667 0.980- 0.000Paracercomonas sp. DB-1002-6 18S ribosomal RNA gene and internal transcribed spacer 1, partial sequence.
360-55609662 0.941- 0.000Eocercomonas uvella strain 11-7E 5.8S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
368-1818683731 0.963- 0.000Cercozoa sp. WA60ap124at20LS 5.8S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.

  1 Maximum Alignment Density
  2 "Q" alignment comparison score between default Clustal W and Muscle alignments
  3 Level of resolution (consensus fork index) of the strict consensus tree built from the two bootstrap trees from Clustal W and Muscle alignments.
  4 Trees are unrooted majority rule consensus trees from 'fast bootstrap parsimony' algorithm in PAUP* 4.0 using default ClustalW alignments. Expect performance to deteriorate with low MAD or Q scores, large number of taxa, and high sequence divergence (largely owing to alignment problems). Only trees for (taxon) phylogenetically informative clusters with fewer than 1000 sequences are generated.


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