Cluster set at subtree whose root is 'Apusozoa'

Click here to see taxon by cluster Data Availability Matrix
Cluster IDParent clusterTaxIDsGIsLminLmaxMAD1Q2Tcfi3Defline of longest sequenceTree4
0-257761453 0.705- 0.000Apusomonas proboscidea clone apactin1g actin gene, partial cds.-
1-2216761906 0.940- 0.000Apusomonas proboscidea clone aphsp90 Hsp90 mRNA, partial cds.-
2-3330603250 0.962- 0.000Apusomonas proboscidea clone aplsu large subunit ribosomal RNA gene, partial sequence.-
3-248911811 0.764- 0.000Apusomonas proboscidea clone aptub13 beta tubulin gene, partial cds.-
4-2311201153 0.990- 0.000Apusomonas proboscidea clone aptuab alpha tubulin mRNA, partial cds.-
5-92216611870 0.945- 0.000Amastigomonas sp. Millport 18S ribosomal RNA gene, partial sequence.
6-11671671 1.000- 0.000Apusomonas proboscidea strain CCAP 1905/1 elongation factor 1 alpha (ef1a) gene, partial cds.-
7-1111821182 1.000- 0.000Apusomonas proboscidea HFCC47 28S ribosomal RNA gene, partial sequence.-
8-11552552 1.000- 0.000Planomonas micra strain ATCC 50267 elongation factor 1 alpha (ef1a) gene, partial cds.-
9-22153192 0.898- 0.000Planomonas micra strain ATCC 50267 polyubiquitin (pub) gene, partial cds.-
10-25476568 0.937- 0.000Ancyromonas sigmoides strain HFCC62 28S ribosomal RNA gene, partial sequence.-
11-11776776 1.000- 0.000Amastigomonas debruynei bifunctional dihydrofolate reductase-thymidylate synthase (DHFR-TS) gene, partial cds.-

  1 Maximum Alignment Density
  2 "Q" alignment comparison score between default Clustal W and Muscle alignments
  3 Level of resolution (consensus fork index) of the strict consensus tree built from the two bootstrap trees from Clustal W and Muscle alignments.
  4 Trees are unrooted majority rule consensus trees from 'fast bootstrap parsimony' algorithm in PAUP* 4.0 using default ClustalW alignments. Expect performance to deteriorate with low MAD or Q scores, large number of taxa, and high sequence divergence (largely owing to alignment problems). Only trees for (taxon) phylogenetically informative clusters with fewer than 1000 sequences are generated.


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