Cluster set at subtree whose root is 'Amoebozoa'

Click here to see taxon by cluster Data Availability Matrix
Cluster IDParent clusterTaxIDsGIsLminLmaxMAD1Q2Tcfi3Defline of longest sequenceTree4
9-8751497873583 0.301- 0.000Acanthamoeba sp. KA/MSG23 18S ribosomal RNA gene, complete sequence.-
10-42448421431 0.754- 0.000Nolandella sp. ATCC PRA-27 alpha-tubulin gene, partial cds.
25-4118231036 0.893- 0.000Dictyostelium mucoroides 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
52-70804351890 0.547- 0.000Ceratiomyxa fruticulosa isolate CH3 elongation factor 1A (EF1A) gene, partial cds.
70-435212443773 0.551- 0.000Didymium iridis partial IGS, 18S rRNA gene, I-DirI gene and partial ITS1, isolate Pan2-16.
75-51111001858 0.844- 0.000Stemonitis flavogenita cytochrome c oxidase subunit 1 (COI) mRNA, complete cds; mitochondrial gene for mitochondrial product.
78-55387404 0.990- 0.000Hemitrichia clavata 12S ribosomal RNA gene, partial sequence.
86-922164181236 0.370- 0.000Craterium leucocephalum var. scyphoides gene for small subunit ribosomal RNA, partial sequence, specimen_voucher: TNS-M-Y-14796 (TNS).
182-27366341754 0.574- 0.000Thecamoeba similis actin mRNA, complete cds.
186-873494495 0.998- 0.000Cochliopodium minutoidum strain Cm1 clone Cochlmin2 cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial.
199-88448511 0.965- 0.000Vannella sp. strain S98M8/I internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence.
200-4416651696 0.991- 0.000Platyamoeba sp. strain CAZ7/I 18S small subunit ribosomal RNA gene, partial sequence.
213-71423722524 0.982- 0.000Sappinia pedata strain AUK06-2-1 small subunit ribosomal RNA gene, partial sequence.
335-193610362431 0.828- 0.000Entamoeba nuttalli genes for 18S rRNA, ITS1, 5.8S rRNA, ITS2, complete sequence, strain: NASA6.
344-4518572704 0.928- 0.000Entamoeba invadens adhE gene for alcohol dehydrogenase E.
382-4193991131 0.607- 0.000Entamoeba dispar mRNA for peroxiredoxin, complete cds.
419-5810722832 0.553- 0.000Entamoeba nuttalli cpn60 gene for chaperonin 60, complete cds, strain: P19-061405, allele: cpn60-2.
572-287815001559 0.975- 0.000Acanthamoeba tubiashi strain OC15C 16S small subunit ribosomal RNA gene, partial sequence; mitochondrial gene for mitochondrial product.
573-4238083 0.965- 0.000Acanthamoeba sp. from Pakistan 26S ribosomal RNA gene, partial sequence.
589-2426229310 0.759- 0.000Acanthamoeba sp. ICL-17/T11 isolate ICL-17 18S ribosomal RNA gene, partial sequence.
593-912559847 0.849- 0.000Acanthamoeba sp. ATCC 50496 tRNA-Ile (trnI2), tRNA-Ala (trnA), tRNA-Pro (trnP), tRNA-Asp (trnD), and tRNA-Met (trnM) genes, complete sequence; mitochondrial.
602-1111384438 0.943- 0.000Acanthamoeba sp. Hold internal transcribed spacer 1, complete sequence.
716-88119151 0.949- 0.000Acanthamoeba sp. A6 DEA-2009 18S ribosomal RNA gene, partial sequence.
717-88116116 1.000- 0.000Acanthamoeba sp. HK-S19 gene for 18S rRNA, partial sequence.

  1 Maximum Alignment Density
  2 "Q" alignment comparison score between default Clustal W and Muscle alignments
  3 Level of resolution (consensus fork index) of the strict consensus tree built from the two bootstrap trees from Clustal W and Muscle alignments.
  4 Trees are unrooted majority rule consensus trees from 'fast bootstrap parsimony' algorithm in PAUP* 4.0 using default ClustalW alignments. Expect performance to deteriorate with low MAD or Q scores, large number of taxa, and high sequence divergence (largely owing to alignment problems). Only trees for (taxon) phylogenetically informative clusters with fewer than 1000 sequences are generated.


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