Cluster set at subtree whose root is 'Jakobida'

Click here to see taxon by cluster Data Availability Matrix
Cluster IDParent clusterTaxIDsGIsLminLmaxMAD1Q2Tcfi3Defline of longest sequenceTree4
0-11114114 1.000- 0.000Reclinomonas americana 5S ribosomal RNA (rrn5) gene, mitochondrial gene encoding mitochondrial rRNA.-
1-5917521863 0.978- 0.000Reclinomonas americana small subunit ribosomal RNA gene, complete sequence.
2-4511531237 0.949- 0.000Reclinomonas americana alpha-tubulin gene, partial cds.
3-4711621319 0.930- 0.000Jakoba libera clone 3 beta-tubulin gene, partial cds.
4-1218801888 0.998- 0.000Reclinomonas americana strain 50394 chaperonin subunit alpha gene, partial cds.-
5-12843845 0.999- 0.000Reclinomonas americana ATP synthase F0 subunit b (atp4) gene, complete cds; mitochondrial gene for mitochondrial product.-
6-1223862440 0.989- 0.000Reclinomonas americana vacuolar protein sorting protein 35-2 (VPS35-2) gene, partial cds.-
7-11618618 1.000- 0.000Reclinomonas americana Rpl7A mRNA, partial cds.-
8-1113571357 1.000- 0.000Reclinomonas americana Rpl7A gene, partial cds.-
9-11799799 1.000- 0.000Reclinomonas americana Shwachman-Bodian-Diamond protein-like protein mRNA, partial cds.-
10-1125802580 1.000- 0.000Reclinomonas americana cytosolic heat shock protein 90 (HSP90) gene, partial cds.-
11-1114461446 1.000- 0.000Reclinomonas americana cytosolic heat shock protein 70 (HSP70) gene, partial cds.-
12-1124182418 1.000- 0.000Reclinomonas americana translation elongation factor 2 (EF-2) gene, partial cds.-
13-5712491860 0.827- 0.000Seculamonas ecuadoriensis elongation factor 1 alpha mRNA, complete cds.
14-11915915 1.000- 0.000Jakoba libera ATP synthase F0 subunit b (atp4) gene, complete cds; mitochondrial gene for mitochondrial product.-
15-11750750 1.000- 0.000Jakoba libera Rpl7A mRNA, partial cds.-
16-11922922 1.000- 0.000Jakoba libera Rpl7A gene, partial cds.-
17-12534574 0.965- 0.000Jakoba libera glycosyl hydrolase mRNA, partial cds.-
18-11249249 1.000- 0.000Jakoba libera sphingosine phosphate lyase-like protein mRNA, partial cds.-
19-11567567 1.000- 0.000Jakoba libera NADPH:quinone reductase-like protein mRNA, partial cds.-
20-1113791379 1.000- 0.000Jakoba libera actin pseudogene, partial sequence.-
21-11667667 1.000- 0.000Jakoba bahamiensis ATP synthase F0 subunit b (atp4) gene, complete cds; mitochondrial gene for mitochondrial product.-
22-11783783 1.000- 0.000Seculamonas ecuadoriensis ATP synthase F0 subunit b (atp4) gene, complete cds; mitochondrial gene for mitochondrial product.-
23-11653653 1.000- 0.000Seculamonas ecuadoriensis Rpl7A mRNA, partial cds.-
24-1110921092 1.000- 0.000Seculamonas ecuadoriensis Rpl7A gene, partial cds.-
25-11558558 1.000- 0.000Seculamonas ecuadoriensis aminopeptidase-like protein mRNA, partial cds.-
26-11846846 1.000- 0.000Andalucia incarcerata isolate MB1 actin gene, partial cds.-
27-1112041204 1.000- 0.000Andalucia incarcerata isolate MB1 translation elongation factor 1 alpha gene, partial cds.-
28-1122812281 1.000- 0.000Andalucia incarcerata isolate MB1 translation elongation factor 2 gene, partial cds.-
29-1117601760 1.000- 0.000Andalucia incarcerata isolate MB1 cytosolic heat shock protein 90 gene, partial cds.-
30-11846846 1.000- 0.000Andalucia godoyi isolate AND28 actin gene, partial cds.-
31-1112041204 1.000- 0.000Andalucia godoyi isolate AND28 translation elongation factor 1 alpha gene, partial cds.-
32-1122822282 1.000- 0.000Andalucia godoyi isolate AND28 translation elongation factor 2 gene, partial cds.-
33-1113871387 1.000- 0.000Andalucia godoyi isolate AND28 cytosolic heat shock protein 70 gene, partial cds.-
34-1119301930 1.000- 0.000Andalucia godoyi isolate AND28 cytosolic heat shock protein 90 gene, partial cds.-

  1 Maximum Alignment Density
  2 "Q" alignment comparison score between default Clustal W and Muscle alignments
  3 Level of resolution (consensus fork index) of the strict consensus tree built from the two bootstrap trees from Clustal W and Muscle alignments.
  4 Trees are unrooted majority rule consensus trees from 'fast bootstrap parsimony' algorithm in PAUP* 4.0 using default ClustalW alignments. Expect performance to deteriorate with low MAD or Q scores, large number of taxa, and high sequence divergence (largely owing to alignment problems). Only trees for (taxon) phylogenetically informative clusters with fewer than 1000 sequences are generated.


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