Cluster set at subtree whose root is 'Parabasalidea'

Click here to see taxon by cluster Data Availability Matrix
Cluster IDParent clusterTaxIDsGIsLminLmaxMAD1Q2Tcfi3Defline of longest sequenceTree4
0-2093222972046 0.736- 0.000Tritrichomonas foetus 18S, 5.8S, and 28S ribosomal RNA genes.
1-16334337 0.999- 0.000Reticulitermes speratus hindgut symbiont 130484 mRNA for family 45 cellulase homologue, clone:9, partial cds.-
2-115710840 0.935- 0.000Reticulitermes speratus hindgut symbiont 130484 mRNA for family 45 cellulase homologue, clone:8-44, complete cds.-
3-2510311096 0.967- 0.000Holomastigotoides mirabile HmEG2 mRNA for endoglucanase 2, partial cds.-
4-5512631265 0.999- 0.000Zootermopsis parabasalian symbiont 30 enolase mRNA, partial cds.
5-2212611263 0.999- 0.000Zootermopsis parabasalian symbiont 22 enolase mRNA, partial cds.-
6-1112861286 1.000- 0.000Zootermopsis parabasalian symbiont 29 enolase mRNA, partial cds.-
7-88176200 0.931- 0.000Monocercomonas sp. 28S ribosomal RNA.
8-557079 0.965- 0.000Pentatrichomonas hominis 28S ribosomal RNA.
9-665961 0.992- 0.000Tritrichomonas foetus 28S ribosomal RNA.
10-23375375 1.000- 0.000H.acosta sod2 gene.-
11-1110271027 1.000- 0.000Hypotrichomonas acosta putative cytosolic malate dehydrogenase (MDH) mRNA, complete cds.-
12-11977977 1.000- 0.000Hypotrichomonas acosta putative lactate dehydrogenase (LDH) mRNA, complete cds.-
13-11949949 1.000- 0.000Hypotrichomonas acosta strain ATCC 30069 glyceraldehyde-3-phosphate dehydrogenase gene, partial cds.-
14-11991991 1.000- 0.000Hypotrichomonas acosta strain ATCC 30069 enolase 1 gene, partial cds.-
15-11985985 1.000- 0.000Hypotrichomonas acosta strain ATCC 30069 enolase 2 gene, partial cds.-
16-183510431492 0.789- 0.000Holomastigotoides mirabile atub mRNA for alpha tubulin, partial cds.
17-122211201731 0.716- 0.000Trichonympha agilis btub1 mRNA for beta-tubulin, complete cds.
18-11354354 1.000- 0.000Hypotrichomonas acosta strain 3 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence.-
19-11375375 1.000- 0.000Monocercomonas sp. sod gene.-
20-11970970 1.000- 0.000Monocercomonas sp. glyceraldehyde-3-phosphate dehydrogenase (gap) gene, partial cds.-
21-11655655 1.000- 0.000Monocercomonas sp. class II fumarase gene, partial cds.-
22-1114251425 1.000- 0.000Monocercomonas sp. chaperonin subunit alpha gene, partial cds.-
23-11630630 1.000- 0.000Monocercomonas sp. glutamate dehydrogenase (gdh) gene, partial cds.-
24-124311385 0.982- 0.000Dientamoeba fragilis strain Bi/PA clone F1 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence.-
25-11634634 1.000- 0.000Monocercomonas ATCC50210 translation initiation factor 2 gamma subunit (eIF-2 gamma) gene, partial cds.-
26-11991991 1.000- 0.000Monocercomonas ATCC50210 enolase 2 gene, partial cds.-
27-11991991 1.000- 0.000Monocercomonas ATCC50210 enolase 1 gene, partial cds.-
28-11942942 1.000- 0.000Monocercomonas ATCC50210 putative cytosolic malate dehydrogenase (MDH) mRNA, partial cds.-
29-11984984 1.000- 0.000Monocercomonas colubrorum putative cytosolic malate dehydrogenase (MDH) mRNA, partial cds.-
30-23292316 0.969- 0.000Monocercomonas colubrorum strain EUMM isolate 2 16S-like ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S-like ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S-like ribosomal RNA gene, partial sequence.-
31-12299348 0.930- 0.000Histomonas meleagridis small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.-
32-199295 0.979- 0.000Histomonas meleagridis clone 10 internal transcribed spacer 1, complete sequence.-
33-12459510 0.950- 0.000Histomonas meleagridis partial mRNA for hypothetical protein, clone 175/2.-
34-11522522 1.000- 0.000Histomonas meleagridis partial mRNA for hypothetical protein, clone 186a/1.-
35-11462462 1.000- 0.000Histomonas meleagridis partial mRNA for hypothetical protein, clone 152b/1.-
36-11687687 1.000- 0.000Histomonas meleagridis partial mRNA for hypothetical protein, clone 97/1.-
37-1117281728 1.000- 0.000Histomonas meleagridis partial mRNA for hypothetical protein, clone 15a/2.-
38-1119861986 1.000- 0.000Histomonas meleagridis partial mRNA for hypothetical protein, clone 5a/3.-
39-11981981 1.000- 0.000Histomonas meleagridis partial mRNA for putative metallo-beta-lactamase superfamily III protein (TVAG_483060 gene), clone 218/1.-
40-11222222 1.000- 0.000Histomonas meleagridis partial mRNA for putative histone 2A-IV (TVAG_105970 gene), clone 191b/1.-
41-1119831983 1.000- 0.000Histomonas meleagridis partial mRNA for putative AMP-binding enzyme protein (TVAG_059030 gene), clone 15c/1.-
42-11771771 1.000- 0.000Histomonas meleagridis partial mRNA for putative ubiquitin family protein (TVAG_392980 gene), clone 10a/3.-
43-1110141014 1.000- 0.000Histomonas meleagridis partial mRNA for putative guanine nucleotide-binding protein beta subunit (TVAG_429360 gene), clone 23b/2.-
44-11612612 1.000- 0.000Histomonas meleagridis partial mRNA for putative triosephosphate isomerase (TVAG_096350 gene), clone 110c/1.-
45-11582582 1.000- 0.000Histomonas meleagridis partial mRNA for putative sugar isomerase domain containing protein (TVAG_011780 gene), clone 145/2.-
46-1117911791 1.000- 0.000Histomonas meleagridis partial mRNA for putative phosphoglucomutase/phosphomannomutase family protein (TVAG_205910 gene), clone 58c/1.-
47-11558558 1.000- 0.000Histomonas meleagridis partial mRNA for putative DJ-1 family protein (TVAG_240750 gene), clone 76b/1.-
48-11732732 1.000- 0.000Histomonas meleagridis partial mRNA for putative thioredoxin reductase (TVAG_474980 gene), clone 28/1.-
49-11915915 1.000- 0.000Histomonas meleagridis partial mRNA for putative CAMK family protein kinase (TVAG_032510 gene), clone 141/2.-
50-1119411941 1.000- 0.000Histomonas meleagridis partial mRNA for putative C2 domain containing protein (TVAG_485580 gene), clone 37b/1.-
51-11801801 1.000- 0.000Histomonas meleagridis partial mRNA for putative CAMK family protein kinase (TVAG_402790 gene), clone 25a/2.-
52-11609609 1.000- 0.000Histomonas meleagridis partial mRNA for putative pyruvate:ferredoxin oxidoreductase E (TVAG_254890 gene), clone 117a/1.-
53-11750750 1.000- 0.000Histomonas meleagridis partial mRNA for putative cytosolic malate dehydrogenase 2 (MDH2 gene), clone 177/1.-
54-11837837 1.000- 0.000Histomonas meleagridis partial mRNA for putative hydrogenosomal malic enzyme subunit A / AP65-2 adhesin (AP65-2 gene), clone 93a/2.-
55-11555555 1.000- 0.000Histomonas meleagridis partial mRNA for putative hydrogenosomal oxygen reductase (TVAG_036010 gene), clone 11/2.-
58-21411001167 0.948- 0.000Histomonas meleagridis partial mRNA for putative actin (TVAG_149090 gene), clone 73/2.-
59-1118751875 1.000- 0.000Histomonas meleagridis partial mRNA for putative fimbrin (TVAG_351310 gene), clone 48/3.-
60-1216291839 0.943- 0.000Histomonas meleagridis mRNA for putative alpha-actinin (TVAG_190450 gene), clone 9a/3.-
61-11792792 1.000- 0.000Histomonas meleagridis partial mRNA for putative ribosomal protein L8 (TVAG_371270 gene), clone 195a/2.-
62-11516516 1.000- 0.000Histomonas meleagridis partial mRNA for putative ribosomal protein L18 (TVAG_098450 gene), clone 183c/2.-
63-11825825 1.000- 0.000Histomonas meleagridis partial mRNA for putative ribosomal protein conserved domain L4/L1 family (TVAG_476810 gene), clone 110a/1.-
64-3311851368 0.939- 0.000Histomonas meleagridis partial mRNA for putative elongation factor 1-alpha (tef1 gene), clone 79a/1.-
65-11123123 1.000- 0.000Histomonas meleagridis partial mRNA for putative 60S acidic ribosomal protein P1 (TVAG_067970 gene), clone 29b/1.-
66-11969969 1.000- 0.000Histomonas meleagridis partial mRNA for putative ribosomal protein L10 (TVAG_006370 gene), clone 32a/1.-
67-1122952295 1.000- 0.000Histomonas meleagridis partial mRNA for putative glutaminyl tRNA synthetase family protein (TVAG_258380 gene), clone 7/1.-
68-11267267 1.000- 0.000Histomonas meleagridis partial mRNA for putative ribosomal protein S3 (TVAG_106800 gene), clone 3/1.-
69-223437457 0.960- 0.000Histomonas meleagridis strain 1297 clone 2 beta-tubulin gene, partial cds.-
70-1113881388 1.000- 0.000Histomonas meleagridis iron hydrogenase (HYD) gene, partial cds.-
71-1117441744 1.000- 0.000Histomonas meleagridis malic enzyme (ME) gene, complete cds.-
72-259411060 0.945- 0.000Histomonas meleagridis alpha-succinyl coenzyme A synthetase (alphaSCS) gene, complete cds.-
73-16279421079 0.934- 0.000Stephanonympha sp. Nk3 gap3 mRNA for glyceraldehyde-3-phosphate dehydrogenase, partial cds.
74-1112681268 1.000- 0.000Zootermopsis parabasalian symbiont 31 enolase mRNA, partial cds.-
76-1114271427 1.000- 0.000Reticulitermes flavipes gut symbiont cell-3 exoglucanase-type cellulase mRNA, complete cds.-
77-1112401240 1.000- 0.000Reticulitermes flavipes gut symbiont cell-4 exoglucanase-type cellulase mRNA, complete cds.-
78-1212801281 1.000- 0.000Stephanonympha sp. Nk3 eno1 mRNA for enolase, partial cds.-
79-1116921692 1.000- 0.000Parabasalian symbiont from Zootermopsis angusticollis pyruvate phosphate dikinase (ppdk) mRNA, partial cds.-
80-1115621562 1.000- 0.000Calonympha sp. WIO-2007 partial 18S rRNA gene.-
81-449701246 0.844- 0.000Trichomonas tenax putative cytosolic malate dehydrogenase (MDH) mRNA, partial cds.
82-3510141449 0.803- 0.000Trichomonas tenax lactate dehydrogenase (LDH) mRNA, partial cds.-
83-1222832286 0.999- 0.000Trichomonas tenax gene for elongation factor 2, partial cds, clone:Tef2-2.-
84-11307307 1.000- 0.000Trichomonas tenax 5S ribosomal RNA type A gene, complete sequence; and 5S ribosomal RNA intergenic spacer, partial sequence.-
85-11316316 1.000- 0.000Trichomonas tenax 5S ribosomal RNA type B gene, complete sequence; and 5S ribosomal RNA intergenic spacer, partial sequence.-
86-2411091848 0.700- 0.000Trichomonas gallinae [Fe]-hydrogenase gene, partial cds.-
87-22917951 0.982- 0.000Trichomonas gallinae hydrogenosomal carrier protein (Hmp31) gene, partial cds.-
88-356651044 0.870- 0.000Trichomonas sp. RWG-2007-1 isolate M9 alpha-tubulin gene, partial cds.-
89-11149149 1.000- 0.000Trichomonas gallinae 18S ribosomal RNA gene, partial sequence.-
90-46153214445 0.782- 0.000Tetratrichomonas prowazeki strain SL small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence.
91-11991991 1.000- 0.000Devescovina sp. Nk9 eno mRNA for enolase, partial cds.-
92-15270339 0.931- 0.000Pentatrichomonas hominis putative rRNA small subunit gene, partial sequence, putative internal transcribed spacer 1, putative 5.8S rRNA gene, and putative internal transcribed spacer 2, complete sequence, and putative rRNA large subunit gene, partial sequence. sequences.-
93-22291341 0.927- 0.000Pentatrichomonas hominis 28S ribosomal RNA.-
94-11975975 1.000- 0.000Pentatrichomonas hominis putative lactate dehydrogenase (LDH) mRNA, partial cds.-
95-24375375 1.000- 0.000T.gallinarum sod gene.-
96-349671053 0.942- 0.000Tetratrichomonas gallinarum glyceraldehyde-3-phosphate dehydrogenase (gap) gene, partial cds.-
97-22637637 1.000- 0.000Tetratrichomonas gallinarum class II fumarase gene, partial cds.-
98-11991991 1.000- 0.000Tetratrichomonas gallinarum strain A6 enolase gene, partial cds.-
99-836299507 0.696- 0.000Tritrichomonas sp. AUTf isolate AUTf-5 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
100-11948948 1.000- 0.000Tritrichomonas foetus extracellular cysteine protease 8 mRNA, complete cds.-
101-11962962 1.000- 0.000Tritrichomonas foetus hypoxanthine-guanine-xanthine phosphoribosyltransferase (hpt) gene, complete cds.-
102-1119941994 1.000- 0.000Tritrichomonas foetus inosine monophosphate dehydrogenase gene, complete cds.-
103-129481183 0.901- 0.000Tritrichomonas foetus D1 putative cysteine proteinase (TFCP1) gene, complete cds.-
104-11884884 1.000- 0.000Tritrichomonas foetus D1 putative cysteine proteinase (TFCP2) gene, partial cds.-
105-1126962696 1.000- 0.000Tritrichomonas foetus putative serine/threonine protein kinase gene, complete cds.-
106-1130373037 1.000- 0.000Tritrichomonas foetus putative 4-nitrophenylphosphatase and putative CDC20 genes, complete cds.-
107-1123872387 1.000- 0.000Tritrichomonas foetus putative protein tyrosine phosphatase, complete cds, and putative serine/threonine protein kinase genes, partial cds.-
108-1164746474 1.000- 0.000Tritrichomonas foetus putative fructofuranosidase genes, complete cds, and putative nucleoporin gene, partial cds.-
109-1125902590 1.000- 0.000Tritrichomonas foetus putative glyceraldehyde-3-phosphate dehydrogenase gene, complete cds, and putative serine/threonine protein kinase gene, partial cds.-
110-1138443844 1.000- 0.000Tritrichomonas foetus putative superoxide dismutase 1 (SOD1) gene, complete cds.-
111-1140894089 1.000- 0.000Tritrichomonas foetus putative superoxide dismutase 2 (SOD2) gene, complete cds.-
112-11194194 1.000- 0.000Tritrichomonas foetus translation initiation factor eIF-4A gene, partial cds.-
113-11312312 1.000- 0.000Tritrichomonas foetus dynein heavy chain gene, partial cds.-
114-11204204 1.000- 0.000Tritrichomonas foetus beta-hexosaminidase gene, partial cds.-
115-1112501250 1.000- 0.000Tritrichomonas foetus unknown protein gene, partial cds.-
116-11471471 1.000- 0.000T.foetus CP3 gene.-
117-11458458 1.000- 0.000T.foetus CP4 gene.-
118-11465465 1.000- 0.000T.foetus CP5 gene.-
119-11456456 1.000- 0.000T.foetus CP6 gene.-
120-12456456 1.000- 0.000T.foetus CP7 gene.-
121-11456456 1.000- 0.000T.foetus CP9 gene.-
122-33286288 0.997- 0.000Tritrichomonas augusta 28S ribosomal RNA.-
123-12375375 1.000- 0.000T.foetus sod1 gene.-
124-11970970 1.000- 0.000Tritrichomonas foetus glyceraldehyde-3-phosphate dehydrogenase (gap2) gene, partial cds.-
125-12998998 1.000- 0.000Tritrichomonas foetus cytosolic malate dehydrogenase 1 (MDH1) mRNA, partial cds.-
126-1111321132 1.000- 0.000Tritrichomonas foetus class II fumarase 1 gene, partial cds.-
127-11655655 1.000- 0.000Tritrichomonas foetus class II fumarase 2 gene, partial cds.-
128-11140140 1.000- 0.000Tritrichomonas foetus succinyl CoA synthetase alpha subunit mRNA, partial cds; nuclear gene for hydrogenosomal protein.-
129-11211211 1.000- 0.000Tritrichomonas foetus ATP/ADP carrier mRNA, partial sequence; nuclear gene for hydrogenosomal protein.-
130-11114114 1.000- 0.000Tritrichomonas foetus succinyl CoA synthetase beta subunit; nuclear gene for hydrogenosomal protein.-
131-11799799 1.000- 0.000Tritrichomonas foetus hydrogenase mRNA, complete cds; nuclear gene for hydrogenosomal protein.-
132-119090 1.000- 0.000Tritrichomonas foetus malic enzyme mRNA, partial cds; nuclear gene for hydrogenosomal protein.-
133-11756756 1.000- 0.000Tritrichomonas foetus pyruvate:ferredoxin oxidoreductase, partial sequence; nuclear gene for hydrogenosomal protein.-
134-12284327 0.934- 0.000Tritrichomonas foetus ferredoxin gene, complete cds; nuclear gene for hydrogenosomal product.-
135-33502502 1.000- 0.000Tritrichomonas foetus strain UT TR7/TR8 PCR-amplified variable-length repeat sequence.-
136-1146444644 1.000- 0.000Tritrichomonas foetus hybrid histidine kinase (hHK) gene, complete cds.-
137-1112361236 1.000- 0.000Tritrichomonas foetus putative cysteine desulphurase gene, complete cds.-
138-1133563356 1.000- 0.000Tritrichomonas foetus strain KV1 glycogen phosphorylase gene, complete cds.-
139-11991991 1.000- 0.000Tritrichomonas foetus strain ATCC 30924 enolase gene, partial cds.-
140-11170170 1.000- 0.000Tritrichomonas foetus microsatellite TfRE sequence.-
141-128621367 0.815- 0.000Tritrichomonas foetus 5S ribosomal RNA type B gene, complete sequence.-
142-11973973 1.000- 0.000Trichomitus batrachorum glyceraldehyde-3-phosphate dehydrogenase (gap1) gene, partial cds.-
143-11970970 1.000- 0.000Trichomitus batrachorum glyceraldehyde-3-phosphate dehydrogenase (gap2) gene, partial cds.-
144-11988988 1.000- 0.000Trichomitus batrachorum enolase 2 gene, partial cds.-
145-11991991 1.000- 0.000Trichomitus batrachorum enolase 1 gene, partial cds.-
146-11655655 1.000- 0.000Trichomitus batrachorum class II fumarase gene, partial cds.-
147-12934938 0.998- 0.000Trichomitus batrachorum cytosolic malate dehydrogenase 1 mRNA, partial cds.-
148-12352387 0.955- 0.000Trichomitus batrachorum strain G43 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence.-
149-11285285 1.000- 0.000Ditrichomonas honigbergii strain DR internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence.-
150-1117341734 1.000- 0.000Tritrichomonas suis mRNA for calreticulin-like protein.-
151-1211201121 1.000- 0.000Tritrichomonas suis mRNA for 45 kDa protein containing 6 EF hand motifs, partial, clone Tf 2.2.2.-
152-4510001128 0.963- 0.000Trichonympha agilis gapdh mRNA for glyceraldehyde-3-phosphate dehydrogenase, complete cds.
153-1115271527 1.000- 0.000Trichonympha agilis eno mRNA for enolase, complete cds.-
154-13510510 1.000- 0.000Trichonympha agilis RsSmRab7_5 mRNA for Small G Protein RAB, partial cds.-
155-11871871 1.000- 0.000Trichonympha agilis elongation factor 1 alpha (EF-1a) mRNA, partial cds.-
156-23300300 1.000- 0.000Honigbergiella ruminantium strain HER5 isolate 3 16S-like ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S-like ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S-like ribosomal RNA gene, partial sequence.-
157-11349349 1.000- 0.000Trichomonadida sp. mockingbird/California/2008 5.8S ribosomal RNA, partial sequence.-
158-12513513 1.000- 0.000Parahistomonas wenrichi isolate AL411F6 clone 3 small subunit ribosomal RNA gene, partial sequence.-
159-1109891027 0.967- 0.000Pseudotrichonympha grassii PgEG1a mRNA for endoglucanase 1, complete cds.-
160-1513531353 1.000- 0.000Pseudotrichonympha grassii PgCBH-homo2a mRNA for cellulase, complete cds.-
161-4410561095 0.989- 0.000Eucomonympha sp. HsE15 gap mRNA for glyceraldehyde-3-phosphate dehydrogenase, partial cds.
162-1212771446 0.942- 0.000Pseudotrichonympha grassii eno2 mRNA for enolase, partial cds.-
163-1116711671 1.000- 0.000Pseudotrichonympha grassii hydA2 mRNA for Fe-hydrogenase, complete cds.-
164-1114171417 1.000- 0.000Pseudotrichonympha grassii hydA1 mRNA for Fe-hydrogenase, complete cds.-
165-5614651485 0.996- 0.000Trichonympha acuta small subunit ribosomal RNA gene, partial sequence.
166-2215071508 1.000- 0.000Trichonympha sp. CpuTcC gene for small subunit ribosomal RNA, partial sequence.-
167-2214841486 0.999- 0.000Trichonympha sp. 2 PJK-2009 small subunit ribosomal RNA gene, partial sequence.-
168-2214791480 1.000- 0.000Trichonympha sp. 3 PJK-2009 small subunit ribosomal RNA gene, partial sequence.-
169-1111071107 1.000- 0.000Holomastigotoides mirabile gap mRNA for glyceraldehyde-3-phosphate dehydrogenase, partial cds.-
170-1113021302 1.000- 0.000Holomastigotoides mirabile eno mRNA for enolase, partial cds.-
171-1114571457 1.000- 0.000Holomastigotoides mirabile hydA1 mRNA for Fe-hydrogenase-like protein, complete cds.-
172-15712792 0.949- 0.000Holomastigotoides mirabile CfXyn2-2 mRNA for endo-beta-1,4-xylanase, complete cds.-
173-11973973 1.000- 0.000Spirotrichonympha leidyi CFP-eg1 mRNA for cellulase, complete cds.-
174-1111261126 1.000- 0.000Spirotrichonympha leidyi gap mRNA for glyceraldehyde-3-phosphate dehydrogenase, complete cds.-
175-1114471447 1.000- 0.000Spirotrichonympha leidyi eno mRNA for enolase, complete cds.-
176-1210041004 1.000- 0.000Eucomonympha imla gap2 mRNA for glyceraldehyde-3-phosphate dehydrogenase, partial cds.-

  1 Maximum Alignment Density
  2 "Q" alignment comparison score between default Clustal W and Muscle alignments
  3 Level of resolution (consensus fork index) of the strict consensus tree built from the two bootstrap trees from Clustal W and Muscle alignments.
  4 Trees are unrooted majority rule consensus trees from 'fast bootstrap parsimony' algorithm in PAUP* 4.0 using default ClustalW alignments. Expect performance to deteriorate with low MAD or Q scores, large number of taxa, and high sequence divergence (largely owing to alignment problems). Only trees for (taxon) phylogenetically informative clusters with fewer than 1000 sequences are generated.


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