Cluster set at subtree whose root is 'Parabasalidea'

Click here to see taxon by cluster Data Availability Matrix
Cluster IDParent clusterTaxIDsGIsLminLmaxMAD1Q2Tcfi3Defline of longest sequenceTree4
0-2093222972046 0.736- 0.000Tritrichomonas foetus 18S, 5.8S, and 28S ribosomal RNA genes.
4-5512631265 0.999- 0.000Zootermopsis parabasalian symbiont 30 enolase mRNA, partial cds.
7-88176200 0.931- 0.000Monocercomonas sp. 28S ribosomal RNA.
8-557079 0.965- 0.000Pentatrichomonas hominis 28S ribosomal RNA.
9-665961 0.992- 0.000Tritrichomonas foetus 28S ribosomal RNA.
16-183510431492 0.789- 0.000Holomastigotoides mirabile atub mRNA for alpha tubulin, partial cds.
17-122211201731 0.716- 0.000Trichonympha agilis btub1 mRNA for beta-tubulin, complete cds.
73-16279421079 0.934- 0.000Stephanonympha sp. Nk3 gap3 mRNA for glyceraldehyde-3-phosphate dehydrogenase, partial cds.
81-449701246 0.844- 0.000Trichomonas tenax putative cytosolic malate dehydrogenase (MDH) mRNA, partial cds.
90-46153214445 0.782- 0.000Tetratrichomonas prowazeki strain SL small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence.
99-836299507 0.696- 0.000Tritrichomonas sp. AUTf isolate AUTf-5 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
152-4510001128 0.963- 0.000Trichonympha agilis gapdh mRNA for glyceraldehyde-3-phosphate dehydrogenase, complete cds.
161-4410561095 0.989- 0.000Eucomonympha sp. HsE15 gap mRNA for glyceraldehyde-3-phosphate dehydrogenase, partial cds.
165-5614651485 0.996- 0.000Trichonympha acuta small subunit ribosomal RNA gene, partial sequence.

  1 Maximum Alignment Density
  2 "Q" alignment comparison score between default Clustal W and Muscle alignments
  3 Level of resolution (consensus fork index) of the strict consensus tree built from the two bootstrap trees from Clustal W and Muscle alignments.
  4 Trees are unrooted majority rule consensus trees from 'fast bootstrap parsimony' algorithm in PAUP* 4.0 using default ClustalW alignments. Expect performance to deteriorate with low MAD or Q scores, large number of taxa, and high sequence divergence (largely owing to alignment problems). Only trees for (taxon) phylogenetically informative clusters with fewer than 1000 sequences are generated.


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