Cluster set at subtree whose root is 'Heterolobosea'

Click here to see taxon by cluster Data Availability Matrix
Cluster IDParent clusterTaxIDsGIsLminLmaxMAD1Q2Tcfi3Defline of longest sequenceTree4
0-111412814128 1.000- 0.000Naegleria gruberi extrachromosomal rDNA plasmid DNA, complete sequence.-
1-1112861286 1.000- 0.000Naegleria gruberi phosphoglycerate kinase (PGK) mRNA, complete cds.-
2-1119501950 1.000- 0.000Naegleria gruberi UMP synthase (UMP) gene, complete cds.-
3-11389389 1.000- 0.000Naegleria gruberi ribosomal protein S15 homologue mRNA, 3' end of cds.-
4-11955955 1.000- 0.000Naegleria gruberi ARK-rich protein mRNA, 3' end.-
5-861063193442 0.460- 0.000Heterolobosea sp. BA 16S small subunit ribosomal RNA gene, partial sequence; and His-Cys box homing endonuclease gene, complete cds.
6-1110791079 1.000- 0.000Naegleria gruberi NEG calcineurin B (CNB1) gene, complete cds.-
7-1117101710 1.000- 0.000Naegleria gruberi NEG flagellar calmodulin (CAM1) gene, complete cds.-
8-11654654 1.000- 0.000Naegleria gruberi centrin (CTN) mRNA, complete cds.-
9-3611111467 0.920- 0.000Naegleria gruberi gene for alpha-tubulin (3).-
10-141913051324 0.991- 0.000Naegleria sp. NG055 partial group I intron containing ORF1 DNA for hypothetical protein, isolate NG055.
11-678842321 0.566- 0.000N.gruberi NbetaT1 gene encoding beta-tubulin.
12-12842904 0.966- 0.000Naegleria gruberi nucleolar basal body binding protein BN46/51 large subunit mRNA, complete cds.-
13-367841608 0.731- 0.000Naegleria fowleri actin gene, complete cds.-
14-2212521443 0.934- 0.000Naegleria gruberi chaperonin subunit alpha gene, partial cds.-
15-2210621377 0.886- 0.000Naegleria gruberi 6-phosphogluconate dehydrogenase (gnd) gene, partial cds.-
16-1147904790 1.000- 0.000Naegleria gruberi RNA polymerase II largest subunit (RPB1) gene, partial cds.-
17-1213382303 0.790- 0.000Naegleria gruberi alpha-tubulin TUBA3 (TUBA3) gene, complete cds.-
18-1258596264 0.968- 0.000Naegleria gruberi basal body protein NBP-1 gene, complete cds.-
19-185235283524 0.739- 0.000Naegleria chilensis 18S, 5.8S and 23S rRNA gene and ITS 1 and 2, strain NG946.
20-1117951795 1.000- 0.000Naegleria gruberi mRNA for hybrid-cluster protein (priS gene).-
21-1113811381 1.000- 0.000Naegleria gruberi partial mRNA for alcohol dehydrogenase (adh gene).-
22-1120042004 1.000- 0.000Naegleria gruberi strain ATCC 30224 heat shock protein 90 (HSP-90) gene, partial cds.-
23-11902902 1.000- 0.000Naegleria gruberi coatomer-like protein beta prime subunit (B'COP) gene, exon 1 and 2 and partial cds.-
24-2220622366 0.936- 0.000Naegleria gruberi heat shock protein 70 mRNA, complete cds.-
25-5714751508 0.990- 0.000Naegleria fowleri isolate 7845 small subunit ribosomal RNA gene, partial sequence; mitochondrial.
26-1114691469 1.000- 0.000Naegleria gruberi differentiation-specific protein 3'-1 (DS3'-1) gene, complete cds.-
27-1116701670 1.000- 0.000Naegleria gruberi differentiation-specific protein 35-2 (DS35-2) gene, partial cds.-
28-11621621 1.000- 0.000Naegleria gruberi differentiation-specific calcium binding protein 1 (NCBP1) mRNA, complete cds.-
29-1115301530 1.000- 0.000Naegleria gruberi kinesin gene, partial cds.-
30-1112121212 1.000- 0.000Naegleria gruberi kelch-like protein gene, complete cds.-
31-11399399 1.000- 0.000Naegleria gruberi profilin gene, complete cds.-
32-1116031603 1.000- 0.000Naegleria gruberi strain NEG-M prolyl-tRNA synthetase (proS) mRNA, partial cds.-
33-1118421842 1.000- 0.000Naegleria gruberi strain NEG-M alanyl-tRNA synthetase (alaS) gene, partial cds.-
34-1110751075 1.000- 0.000Naegleria gruberi CBS domain-containing protein gene, complete cds.-
35-22360615 0.793- 0.000Naegleria fowleri myohemerythrin (ARG-1) gene, complete cds.-
36-1114611461 1.000- 0.000Naegleria gruberi gamma tubulin mRNA, complete cds.-
37-12510777 0.828- 0.000Naegleria gruberi ribosomal protein L7A mRNA, complete cds.-
38-238301215 0.892- 0.000Naegleria andersoni elongation factor 1 alpha (tef1) gene, partial cds.-
39-1126022602 1.000- 0.000Naegleria gruberi translation elongation factor 2 (EF-2) mRNA, complete cds.-
40-11199199 1.000- 0.000Naegleria gruberi mitochondrial single-subunit RNA polymerase (mtRNAP) mRNA, partial cds; nuclear gene for mitochondrial product.-
41-11463463 1.000- 0.000Naegleria gruberi strain NEG-M meiosis-specific MutS-like protein (Msh5) gene, partial cds.-
42-11265265 1.000- 0.000Naegleria gruberi strain NEG-M meiosis-specific MutS-like protein (Msh4) gene, partial cds.-
43-1115461546 1.000- 0.000Naegleria gruberi transacylase mRNA, complete cds.-
44-11360360 1.000- 0.000Naegleria fowleri ATPase subunit 6 (oli2) gene, partial cds; mitochondrial gene for mitochondrial product.-
45-1115771577 1.000- 0.000Naegleria fowleri virulence-related protein (NF314) mRNA, complete cds.-
46-1114821482 1.000- 0.000Naegleria fowleri pyrophosphate-dependent phosphofructo-1-kinase mRNA, complete cds.-
47-11371371 1.000- 0.000Naegleria fowleri phage T3/T7-like RNA polymerase gene, partial cds.-
48-11190190 1.000- 0.000Naegleria fowleri calmodulin (CAM) gene, partial cds.-
49-1112821282 1.000- 0.000Naegleria fowleri Tat-binding protein homolog mRNA, complete cds.-
50-1110961096 1.000- 0.000Naegleria fowleri unknown mRNA, partial cds.-
51-11954954 1.000- 0.000Naegleria fowleri unknown mRNA, partial cds.-
52-1110801080 1.000- 0.000Naegleria fowleri cysteine proteinase homolog mRNA, partial cds.-
53-1118751875 1.000- 0.000Naegleria fowleri penicillin amidase homolog mRNA, partial cds.-
54-11766766 1.000- 0.000Naegleria fowleri thioredoxin homolog mRNA, complete cds.-
55-11384384 1.000- 0.000Naegleria fowleri unknown mRNA, partial cds.-
56-11596596 1.000- 0.000Naegleria fowleri unknown mRNA, partial cds.-
57-1118891889 1.000- 0.000Naegleria fowleri heat-shock protein SSE1 homolog mRNA, partial cds.-
58-1113011301 1.000- 0.000Naegleria fowleri unknown mRNA, partial cds.-
59-11606606 1.000- 0.000Naegleria fowleri 40s ribosomal protein S9 homolog mRNA, complete cds.-
60-11628628 1.000- 0.000Naegleria fowleri fructose-1,6-bisphosphatase homolog mRNA, partial cds.-
61-11771771 1.000- 0.000Naegleria fowleri glutathione S-transferase III homolog mRNA, complete cds.-
62-1112371237 1.000- 0.000Naegleria fowleri unknown mRNA, partial cds.-
63-12355367 0.984- 0.000Naegleria fowleri ubiquitin mRNA, partial cds.-
64-1115101510 1.000- 0.000Naegleria fowleri unknown mRNA, complete cds.-
65-1122862286 1.000- 0.000Naegleria fowleri myosin II heavy chain mRNA, partial cds.-
66-1110841084 1.000- 0.000Naegleria fowleri cpn-60 gene, partial cds.-
67-129891097 0.951- 0.000Naegleria fowleri naegleriapore A precursor (NP-A) gene, partial cds.-
68-1215131693 0.947- 0.000Naegleria fowleri naegleriapore B precursor (NP-B) gene, partial cds.-
69-11573573 1.000- 0.000Naegleria fowleri calcineurin B (nfa-2) gene, complete cds.-
70-11630630 1.000- 0.000Naegleria fowleri high mobility group protein mRNA, complete cds.-
71-11420420 1.000- 0.000Naegleria fowleri 26S proteasome subunit mRNA, partial cds.-
72-11650650 1.000- 0.000Naegleria fowleri membrane protein (mp2Cl5) mRNA, complete cds.-
73-24491597 0.921- 0.000Naegleria fowleri isolate 7852 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, complete sequence; and 5.8S ribosomal RNA gene, partial sequence.-
74-11922922 1.000- 0.000Naegleria fowleri gene for amino acid decarboxylase, partial cds.-
75-11895895 1.000- 0.000Naegleria andersoni glyceraldehyde-3-phosphate dehydrogenase (GAPDH) gene, partial cds.-
76-1111794802 0.996- 0.000Naegleria chilensis 18S rRNA gene, strain NG946.
77-11747747 1.000- 0.000Naegleria jadini 5.8S SSU rRNA gene, ITS1, 5.8S rRNA gene, ITS2 and LSU rRNA gene.-
78-11986986 1.000- 0.000Naegleria lovaniensis strain C-0490 repetitive DNA sequence.-
79-11767767 1.000- 0.000Naegleria minor SSU rRNA gene, ITS1, 5.8S rRNA gene, ITS2 and LSU rRNA gene.-
80-229191214 0.879- 0.000Naegleria morganensis partial SSU, group I intron, ORF1 for putative endonuclease and partial LSU.-
81-129001130 0.898- 0.000Naegleria sp. NG874 partial SSU, group I intron, ORF1 for putative endonuclease and partial LSU.-
82-55508665 0.897- 0.000Naegleria arctica 5.8S rRNA gene, ITS1 and ITS2, isolate SP5.
83-11609609 1.000- 0.000Naegleria sp. 543 18S ribosomal RNA gene, partial sequence.-
84-1112551255 1.000- 0.000Naegleria sp. 552 18S ribosomal RNA gene, partial sequence.-
85-33375375 1.000- 0.000Naegleria sp. NG650 group I intron, strain NG650.-
86-11389389 1.000- 0.000Naegleria sp. NG236 LSU rRNA gene group I intron, 389bp.-
87-11474474 1.000- 0.000Naegleria sp. NG872 LSU rRNA gene group I intron.-
88-1136853685 1.000- 0.000Naegleria sp. TES-2005 Sir2-like protein gene, partial cds; and putative mitochondrial T-odd phage-like single-subunit RNA polymerase gene, complete cds; nuclear gene for mitochondrial product.-
89-44198209 0.974- 0.000Naegleria sp. NG332 group I like ribozyme GIR1, strain NG332.
90-1113398561 0.916- 0.000Tetramitus sp. RTM441 genes for ITS1, 5.8S rRNA, ITS2, 28S rRNA, partial and complete sequence.
91-11523523 1.000- 0.000Tetramitus thermacidophilus ITS1, 5.8S rRNA gene and ITS2, ecotype Pzc6.-
92-23349532 0.872- 0.000Vahlkampfiidae sp. strain SO/1P small subunit ribosomal RNA gene, partial sequence.-
93-55512535 0.977- 0.000Tetramitus lobospinosus ITS1, 5.8S rRNA gene and ITS2, type strain ATCC30298T.
94-11397397 1.000- 0.000P.lanterna mRNA for ferredoxin.-
95-2319021950 0.991- 0.000Sawyeria marylandensis small subunit ribosomal RNA gene, complete sequence.-
96-11195195 1.000- 0.000Psalteriomonas lanterna UBI1 gene.-
97-11342342 1.000- 0.000Psalteriomonas lanterna partial hyd gene for [Fe]-hydrogenase.-
98-11444444 1.000- 0.000Psalteriomonas lanterna mitochondrial complex I subunit mRNA, partial cds; hydrogenosome.-
99-11894894 1.000- 0.000Psalteriomonas lanterna ADP-ATP carrier protein mRNA, partial cds; hydrogenosome.-
100-1110741074 1.000- 0.000Psalteriomonas lanterna propionyl-CoA carboxylase beta subunit mRNA, partial cds; hydrogenosome.-
101-1117851785 1.000- 0.000Psalteriomonas lanterna iron hydrogenase mRNA, partial cds; hydrogenosome.-
102-1114821482 1.000- 0.000Psalteriomonas lanterna pyruvate-ferrodoxin oxidoreductase (PFO) mRNA, partial cds; hydrogenosome.-
103-1112411241 1.000- 0.000Psalteriomonas lanterna elongation factor 1 alpha (EF-1alpha) mRNA, partial cds; hydrogenosome.-
104-11717717 1.000- 0.000Psalteriomonas lanterna heat shock protein 60 (HSP60) mRNA, partial cds; hydrogenosome.-
106-11842842 1.000- 0.000Willaertia magna SSU rRNA gene, 5' end, strain Z503.-
107-11209209 1.000- 0.000Willaertia magna SSU rRNA gene, internal fragment, strain Z503.-
108-11662662 1.000- 0.000Willaertia magna SSU rRNA gene, 3' end, strain Z503.-
109-11490490 1.000- 0.000Willaertia magna LSU rRNA gene, SSU rRNA gene, ITS1, 5.8S rRNA gene and ITS2.-
110-55335347 0.979- 0.000Vahlkampfia ciguana ITS1, 5.8S rRNA gene and ITS2.
111-11659659 1.000- 0.000Vahlkampfia inornata ITS1, 5.8S rRNA gene and ITS2, type strain CCAP1588/2T.-
112-1118431843 1.000- 0.000Vahlkampfia damariscottae SSU rRNA gene, strain CCAP 1588/7.-
113-11414414 1.000- 0.000Neovahlkampfia damariscottae ITS1, 5.8S rRNA gene and ITS2, type strain CCAP1588/7T.-
114-4418761910 0.991- 0.000Paravahlkampfia sp. LA 16S small subunit ribosomal RNA gene, partial sequence.
115-22592600 0.993- 0.000Paravahlkampfia sp. CDC V595 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence.-
116-1110511051 1.000- 0.000Sawyeria marylandensis mitochondrial cpn60 mRNA, partial cds; nuclear gene for mitochondrial product.-
117-11301301 1.000- 0.000Vahlkampfia sp. 1105 ITS1, 5.8S rRNA gene and ITS2, isolate 1105.-
118-11676676 1.000- 0.000Paravahlkampfia sp. 6/3Ab/1B ITS1, 5.8S rRNA gene and ITS2, isolate 6/3Ab/1B.-
119-22662709 0.967- 0.000Vahlkampfia sp. S10 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 26S ribosomal RNA gene, partial sequence.-
120-1114291429 1.000- 0.000Paravahlkampfia sp. LA mitochondrial single-subunit RNA polymerase (mtRNAP) gene, partial cds; nuclear gene for mitochondrial product.-
121-19680730 0.978- 0.000Vahlkampfia sp. AK-2007 genes for ITS1, 5.8S rRNA, ITS2, 28S rRNA, partial and complete sequence, clone: RUI456.-
122-11299299 1.000- 0.000Vahlkampfia sp. AK-2007 genes for ITS1, 5.8S rRNA, ITS2, 28S rRNA, partial and complete sequence, clone: RUI499.-
123-11540540 1.000- 0.000Vahlkampfia sp. AK-2007 genes for ITS1, 5.8S rRNA, ITS2, 28S rRNA, partial and complete sequence, clone: RUI526.-
124-11426426 1.000- 0.000Vahlkampfia sp. VICL-6 18S ribosomal RNA gene, partial sequence.-
125-11693693 1.000- 0.000Acrasis rosea triosephosphate isomerase (TPI) gene, partial cds.-
126-11190190 1.000- 0.000Acrasis rosea calmodulin (CAM) gene, partial cds.-
127-11898898 1.000- 0.000Acrasis rosea glyceraldehyde-3-phosphate dehydrogenase gene, partial cds.-
128-1112041204 1.000- 0.000Acrasis rosea elongation factor 1 alpha (tef1) gene, partial cds.-
129-11941941 1.000- 0.000Acrasis rosea alpha-tubulin gene, partial cds.-
130-1114971497 1.000- 0.000Acrasis rosea chaperonin subunit alpha gene, partial cds.-
131-1113291329 1.000- 0.000Acrasis rosea 6-phosphogluconate dehydrogenase (gnd) gene, partial cds.-
132-1118751875 1.000- 0.000Stachyamoeba sp. ATCC 50324 16S-like ribosomal RNA gene, complete sequence.-
133-1217851808 0.994- 0.000Heteramoeba clara 16S-like ribosomal RNA gene, complete sequence.-
134-11516516 1.000- 0.000Heteramoeba clara ITS1, 5.8S rRNA gene and ITS2, type strain CCAP1536/1T.-
135-1129622962 1.000- 0.000Macropharyngomonas halophila 16S-like ribosomal RNA gene, complete sequence.-
136-1119081908 1.000- 0.000Monopylocystis visvesvarai small subunit ribosomal RNA, complete sequence.-
137-1121002100 1.000- 0.000Percolomonas cosmopolitus 16S-like ribosomal RNA gene, complete sequence.-
138-1118101810 1.000- 0.000Percolomonas cosmopolitus 18S ribosomal RNA gene, partial sequence.-
139-25763796 0.985- 0.000Stephanopogon apogon clone 1 actin gene, partial cds.-
140-1113951395 1.000- 0.000Stephanopogon colpoda small subunit ribosomal RNA gene, partial sequence.-
141-1119001900 1.000- 0.000Soil amoeba AND9 18S ribosomal RNA gene, partial sequence.-
142-1145244524 1.000- 0.000Rosculus sp. ATCC 50888 mitochondrial single-subunit RNA polymerase (mtRNAP) gene, complete cds; nuclear gene for mitochondrial product.-
143-1126502650 1.000- 0.000Stygamoeba sp. ruffled mitochondrial single-subunit RNA polymerase (mtRNAP) gene, partial cds; nuclear gene for mitochondrial product.-
144-11932932 1.000- 0.000Heterolobosea sp. OSA mitochondrial single-subunit RNA polymerase (mtRNAP) gene, partial cds; nuclear gene for mitochondrial product.-
145-1125982598 1.000- 0.000Pleurostomum flabellatum strain EHF1 18S ribosomal RNA gene, partial sequence.-
146-1114071407 1.000- 0.000Stachyamoeba lipophora elongation factor 1 alpha mRNA, complete cds.-
147-1121262126 1.000- 0.000Stephanopogon minuta gene for 18S ribosomal RNA, partial sequence.-
148-11498498 1.000- 0.000Allovahlkampfia spelaea strain SK1 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.-
149-11456456 1.000- 0.000Heterolobosea sp. EV10A ITS1, 5.8S rRNA gene and ITS2, isolate EV10A.-
150-1119721972 1.000- 0.000Euplaesiobystra hypersalinica strain A2 18S ribosomal RNA gene, partial sequence.-
151-1117851785 1.000- 0.000Vrihiamoeba italica gene for small subunit ribosomal RNA, partial sequence.-
152-11829829 1.000- 0.000Vrihiamoeba italica genes for ITS1, 5.8S rRNA, ITS2, partial and complete sequence.-

  1 Maximum Alignment Density
  2 "Q" alignment comparison score between default Clustal W and Muscle alignments
  3 Level of resolution (consensus fork index) of the strict consensus tree built from the two bootstrap trees from Clustal W and Muscle alignments.
  4 Trees are unrooted majority rule consensus trees from 'fast bootstrap parsimony' algorithm in PAUP* 4.0 using default ClustalW alignments. Expect performance to deteriorate with low MAD or Q scores, large number of taxa, and high sequence divergence (largely owing to alignment problems). Only trees for (taxon) phylogenetically informative clusters with fewer than 1000 sequences are generated.


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