Cluster set at subtree whose root is 'Heterolobosea'

Click here to see taxon by cluster Data Availability Matrix
Cluster IDParent clusterTaxIDsGIsLminLmaxMAD1Q2Tcfi3Defline of longest sequenceTree4
5-861063193442 0.460- 0.000Heterolobosea sp. BA 16S small subunit ribosomal RNA gene, partial sequence; and His-Cys box homing endonuclease gene, complete cds.
10-141913051324 0.991- 0.000Naegleria sp. NG055 partial group I intron containing ORF1 DNA for hypothetical protein, isolate NG055.
11-678842321 0.566- 0.000N.gruberi NbetaT1 gene encoding beta-tubulin.
19-185235283524 0.739- 0.000Naegleria chilensis 18S, 5.8S and 23S rRNA gene and ITS 1 and 2, strain NG946.
25-5714751508 0.990- 0.000Naegleria fowleri isolate 7845 small subunit ribosomal RNA gene, partial sequence; mitochondrial.
76-1111794802 0.996- 0.000Naegleria chilensis 18S rRNA gene, strain NG946.
82-55508665 0.897- 0.000Naegleria arctica 5.8S rRNA gene, ITS1 and ITS2, isolate SP5.
89-44198209 0.974- 0.000Naegleria sp. NG332 group I like ribozyme GIR1, strain NG332.
90-1113398561 0.916- 0.000Tetramitus sp. RTM441 genes for ITS1, 5.8S rRNA, ITS2, 28S rRNA, partial and complete sequence.
93-55512535 0.977- 0.000Tetramitus lobospinosus ITS1, 5.8S rRNA gene and ITS2, type strain ATCC30298T.
110-55335347 0.979- 0.000Vahlkampfia ciguana ITS1, 5.8S rRNA gene and ITS2.
114-4418761910 0.991- 0.000Paravahlkampfia sp. LA 16S small subunit ribosomal RNA gene, partial sequence.

  1 Maximum Alignment Density
  2 "Q" alignment comparison score between default Clustal W and Muscle alignments
  3 Level of resolution (consensus fork index) of the strict consensus tree built from the two bootstrap trees from Clustal W and Muscle alignments.
  4 Trees are unrooted majority rule consensus trees from 'fast bootstrap parsimony' algorithm in PAUP* 4.0 using default ClustalW alignments. Expect performance to deteriorate with low MAD or Q scores, large number of taxa, and high sequence divergence (largely owing to alignment problems). Only trees for (taxon) phylogenetically informative clusters with fewer than 1000 sequences are generated.


Back to taxonomic hierarchy view