Cluster set at subtree whose root is 'Heterolobosea'

Click here to see taxon by cluster Data Availability Matrix
Cluster IDParent clusterTaxIDsGIsLminLmaxMAD1Q2Tcfi3Defline of longest sequenceTree4
5-861063193442 0.460- 0.000Heterolobosea sp. BA 16S small subunit ribosomal RNA gene, partial sequence; and His-Cys box homing endonuclease gene, complete cds.
10-141913051324 0.991- 0.000Naegleria sp. NG055 partial group I intron containing ORF1 DNA for hypothetical protein, isolate NG055.
11-678842321 0.566- 0.000N.gruberi NbetaT1 gene encoding beta-tubulin.
19-185235283524 0.739- 0.000Naegleria chilensis 18S, 5.8S and 23S rRNA gene and ITS 1 and 2, strain NG946.
25-5714751508 0.990- 0.000Naegleria fowleri isolate 7845 small subunit ribosomal RNA gene, partial sequence; mitochondrial.
76-1111794802 0.996- 0.000Naegleria chilensis 18S rRNA gene, strain NG946.
82-55508665 0.897- 0.000Naegleria arctica 5.8S rRNA gene, ITS1 and ITS2, isolate SP5.
89-44198209 0.974- 0.000Naegleria sp. NG332 group I like ribozyme GIR1, strain NG332.
90-1113398561 0.916- 0.000Tetramitus sp. RTM441 genes for ITS1, 5.8S rRNA, ITS2, 28S rRNA, partial and complete sequence.
93-55512535 0.977- 0.000Tetramitus lobospinosus ITS1, 5.8S rRNA gene and ITS2, type strain ATCC30298T.
110-55335347 0.979- 0.000Vahlkampfia ciguana ITS1, 5.8S rRNA gene and ITS2.
114-4418761910 0.991- 0.000Paravahlkampfia sp. LA 16S small subunit ribosomal RNA gene, partial sequence.

  1 Maximum Alignment Density
  2 "Q" alignment comparison score between default Clustal W and Muscle alignments
  3 Level of resolution (consensus fork index) of the strict consensus tree built from the two bootstrap trees from Clustal W and Muscle alignments.
  4 Trees are unrooted majority rule consensus trees from 'fast bootstrap parsimony' algorithm in PAUP* 4.0 using default ClustalW alignments. Expect performance to deteriorate with low MAD or Q scores, large number of taxa, and high sequence divergence (largely owing to alignment problems). Only trees for (taxon) phylogenetically informative clusters with fewer than 1000 sequences are generated.

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