Cluster set at subtree whose root is 'Plasmodium chabaudi'

Click here to see taxon by cluster Data Availability Matrix
Cluster IDParent clusterTaxIDsGIsLminLmaxMAD1Q2Tcfi3Defline of longest sequenceTree4
0112607614 0.994- 0.000Plasmodium chabaudi haplotype R16 cytochrome b gene, partial cds; mitochondrial.-
12358951005 0.963- 0.000Plasmodium chabaudi adami strain 408XZ cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial.-
231412881288 1.000- 0.000Plasmodium chabaudi strain AS-ART 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (LytB) gene, complete cds.-
3414829829 1.000- 0.000Plasmodium chabaudi strain AS-ART hypothetical protein gene, complete cds.-
451419151915 1.000- 0.000Plasmodium chabaudi strain AS-ART hypothetical protein gene, complete cds.-
561430804000 0.895- 0.000Plasmodium chabaudi strain AS-ART ubiquitin specific protease-1 (ubp-1) gene, complete cds.-
671412261226 1.000- 0.000Plasmodium chabaudi strain AS-ART vacuolar ATP synthase (V-ATPase) gene, complete cds.-
781186708670 1.000- 0.000Plasmodium chabaudi strain AS-ART ubiquitin specific protease-2 (ubp-2) gene, complete cds.-
891109812550 0.522- 0.000Plasmodium chabaudi apical membrane antigen I (AMA-1) gene, complete cds.-
91036504641 0.848- 0.000Plasmodium chabaudi caseinolytic protease C (clpC) gene, partial cds; apicoplast.-
101111206206 1.000- 0.000Plasmodium chabaudi strain R16 adenylosuccinate lyase (asl) gene, partial cds.-
111211938938 1.000- 0.000P.chabaudi hsp70 gene encoding a heat shock protein.-
12131314281446 0.993- 0.000P.chabaudi major merozoite surface antigen gene, partial cds.-
13141224832564 0.984- 0.000Plasmodium chabaudi erythrocyte membrane antigen mRNA, partial cds.-
14151115961596 1.000- 0.000Plasmodium chabaudi hsp70-like protein, complete cds.-
15161112501250 1.000- 0.000Plasmodium chabaudi adami integral membrane protein mRNA, complete cds.-
16171221124186 0.752- 0.000Plasmodium chabaudi putative glutamate and asparagine rich protein, partial cds.-
171826288393 0.915- 0.000Plasmodium chabaudi adami merozoite surface protein-119 (MSP-119) gene, partial cds.-
181931052986409 0.848- 0.000P.chabaudi major merozoite surface antigen mRNA, complete cds.-
1920267901910 0.794- 0.000Plasmodium chabaudi adami erythrocyte membrane antigen 1 gene, complete cds.-
202111546546 1.000- 0.000Plasmodium chabaudi dihydrofolate reductase (DHFR) gene, partial cds.-
212211975975 1.000- 0.000Plasmodium chabaudi (clones pRV924,36)) cell division cycle protein (cdc2) gene, intron.-
22231117521752 1.000- 0.000P.chabaudi dihydrofolate reductase/thymidylate synthase (DHFR-TS) gene, complete cds.-
232411862862 1.000- 0.000P.chabaudi merozoite surface antigen (MSA-1) mRNA, 5' end.-
242513409427 0.986- 0.000P.chabaudi merozoite surface antigen 1 (MSA-1) gene, partial cds.-
252613429429 1.000- 0.000P.chabaudi merozoite surface antigen 1 (MSA-1) gene, partial cds.-
262713414414 1.000- 0.000P.chabaudi merozoite surface antigen 1 (MSA-1) gene, partial cds.-
27281199859985 1.000- 0.000Plasmodium chabaudi repeat organellar protein gene, complete cds.-
28291126302630 1.000- 0.000Plasmodium chabaudi dihydrofolate reductase-thymidylate synthase gene, promoter region.-
293011921921 1.000- 0.000Plasmodium chabaudi erythrocyte membrane antigen Pc96 mRNA, partial cds.-
303111331331 1.000- 0.000Plasmodium chabaudi mRNA fragment for 24 kd antigen (clone 443).-
313211703703 1.000- 0.000P.chabaudi mRNA for a lysine-rich aspartic acid-rich protein, internal fragment.-
32331121992199 1.000- 0.000P.chabaudi LEMA DNA.-
333431059485949 1.000- 0.000Plasmodium chabaudi chabaudi mitochondrial coxIII, coxI, cytb genes for cytochrome c oxidase subunit III, cytochrome c oxidase subunit I, cytochrome b, complete cds, strain: AQ.-
34351115411541 1.000- 0.000Plasmodium chabaudi circumsporozoite protein (CS) gene, partial cds.-
353611594594 1.000- 0.000Plasmodium chabaudi from Australia large subunit ribosomal RNA gene, partial sequence.-
36371121662166 1.000- 0.000Plasmodium chabaudi unknown genes.-
37381110541054 1.000- 0.000Plasmodium chabaudi AS fructose 1,6-bisphosphate aldolase gene, partial cds.-
383911799799 1.000- 0.000Plasmodium chabaudi ras-like nuclear protein (Ran) gene, complete cds.-
39401144824482 1.000- 0.000Plasmodium chabaudi strain AS cytoadherence linked asexual protein-like protein mRNA, complete cds.-
40412323902488 0.974- 0.000Plasmodium chabaudi partial pppk-dhps gene for dihydropterin pyrophosphokinase-dihydropteroate synthase, exons 1-3.-
41421415871744 0.954- 0.000Plasmodium chabaudi cir2 gene.-
42431125352535 1.000- 0.000Plasmodium chabaudi SRCR LCCL adhesive-like protein (slap) gene, partial cds.-
43443410351035 1.000- 0.000Plasmodium chabaudi chabaudi strain AS cytochrome b (cytb) gene, partial cds; mitochondrial.-
44451151085108 1.000- 0.000Plasmodium chabaudi multi-drug resistance protein (mdr1) gene, complete cds.-
454611463463 1.000- 0.000Plasmodium chabaudi translationally-controlled tumor protein-like protein (TCTP) gene, partial cds.-
46471140094009 1.000- 0.000Plasmodium chabaudi chloroquine resistance transporter (crt)-like protein (cg10) gene, complete cds.-
474811261261 1.000- 0.000Plasmodium chabaudi strain AS MB2 mRNA, partial cds.-
48491110191019 1.000- 0.000Plasmodium chabaudi strain AS MB2 mRNA, partial cds.-
495011996996 1.000- 0.000Plasmodium chabaudi GTP cyclohydrolase I gene, complete cds.-
50511120452045 1.000- 0.000Plasmodium chabaudi 18S ribosomal RNA gene, complete sequence.-
515211812812 1.000- 0.000Plasmodium chabaudi voucher EJT 94 psbJ-petA intergenic spacer, partial sequence.-
52532238796556 0.796- 0.000Plasmodium chabaudi chabaudi asparagine-rich protein gene, partial cds; and merozoite surface protein 4/5 (MSP4/5) and adenylosuccinate lyase (ASL) genes, complete cds.-
535425654654 1.000- 0.000Plasmodium chabaudi adami strain KA556 ookinete surface antigen-like protein Pfs28 gene, complete cds.-
54551142534253 1.000- 0.000Plasmodium chabaudi adami carbamoyl phosphate synthetase II gene, partial cds.-
55561110711071 1.000- 0.000Plasmodium chabaudi adami merozoite surface protein 1 (msp-1) gene, partial cds.-
565724628628 1.000- 0.000Plasmodium chabaudi chabaudi strain CB cysteine protease gene, partial cds.-
575824518518 1.000- 0.000Plasmodium chabaudi chabaudi strain CB dihydrofolate reductase gene, partial cds.-
585924673674 1.000- 0.000Plasmodium chabaudi chabaudi strain CB TufA gene, partial cds; apicoplast.-
596024629641 0.993- 0.000Plasmodium chabaudi chabaudi isolate AS ORF470 gene, partial cds; apicoplast.-
601321113881388 1.000- 0.000Plasmodium chabaudi chabaudi pchcht1 gene for chitinase, partial cds.-
611331117921792 1.000- 0.000Plasmodium chabaudi POM1 (POM1) gene, putative variant antigen epitope, partial cds.-
629311279279 1.000- 0.000Plasmodium chabaudi chabaudi erythrocyte binding-like protein (EBL) gene, partial cds.-
631341116671667 1.000- 0.000Plasmodium chabaudi chabaudi NE-rich protein gene, partial cds.-
641351114531453 1.000- 0.000Plasmodium chabaudi chabaudi aspartic proteinase gene, complete cds.-
651361125652565 1.000- 0.000Plasmodium chabaudi chabaudi PC10A mRNA, complete cds.-
661371113511351 1.000- 0.000Plasmodium chabaudi chabaudi PC11A mRNA, complete cds.-
671381113141314 1.000- 0.000Plasmodium chabaudi chabaudi PC12A mRNA, complete cds.-
681391120222022 1.000- 0.000Plasmodium chabaudi chabaudi PC13A mRNA, complete cds.-
691401312111527 0.869- 0.000Plasmodium chabaudi chabaudi PC15C mRNA, complete cds.-
701411128322832 1.000- 0.000Plasmodium chabaudi chabaudi PC16A mRNA, complete cds.-
711421113651365 1.000- 0.000Plasmodium chabaudi chabaudi PC16B mRNA, partial cds.-
7214311973973 1.000- 0.000Plasmodium chabaudi chabaudi PC17A mRNA, complete cds.-
731441113971397 1.000- 0.000Plasmodium chabaudi chabaudi PC20A mRNA, complete cds.-
741451213571650 0.911- 0.000Plasmodium chabaudi chabaudi PC6cA pseudogene, mRNA, complete sequence.-
751461112121212 1.000- 0.000Plasmodium chabaudi chabaudi PC6C mRNA, partial cds.-
761471216871891 0.946- 0.000Plasmodium chabaudi chabaudi PC8B mRNA, complete cds.-
77611117301730 1.000- 0.000Plasmodium chabaudi chabaudi chabaupain-1 gene, complete cds.-
78661114351435 1.000- 0.000Plasmodium chabaudi chabaudi chabaupain-2 gene, complete cds.-
791481116241624 1.000- 0.000Plasmodium chabaudi chabaudi clone AS protein disulfide isomerase gene, complete cds.-
80941187148714 1.000- 0.000Plasmodium chabaudi chabaudi calcium-dependent ATPase (atp6) gene, complete cds.-
8114912417417 1.000- 0.000Plasmodium chabaudi chabaudi clone CB DNA polymerase alpha gene, partial cds.-
8215012561561 1.000- 0.000Plasmodium chabaudi chabaudi clone CB transporter gene, partial cds.-
8315112426426 1.000- 0.000Plasmodium chabaudi chabaudi clone AJ polypyrimidine tract binding protein gene, partial cds.-
8415212365365 1.000- 0.000Plasmodium chabaudi chabaudi clone CB cleavage stimulation factor subunit 1-like protein gene, partial cds.-
8515312598604 0.995- 0.000Plasmodium chabaudi chabaudi clone CB WD repeat protein gene, partial cds.-
8615412504504 1.000- 0.000Plasmodium chabaudi chabaudi clone CB hypothetical protein gene, partial cds.-
8715512470470 1.000- 0.000Plasmodium chabaudi chabaudi clone CB pseudouridylate synthase gene, partial cds.-
8815612487487 1.000- 0.000Plasmodium chabaudi chabaudi clone CB RNA helicase gene, partial cds.-
8915712422422 1.000- 0.000Plasmodium chabaudi chabaudi clone CB hypothetical protein gene, partial cds.-
9015812495495 1.000- 0.000Plasmodium chabaudi chabaudi clone AJ GCN20 gene, partial cds.-
911591118101810 1.000- 0.000Plasmodium chabaudi chabaudi pchebl gene for erythrocyte-binding-like protein, partial cds.-

  1 Maximum Alignment Density
  2 "Q" alignment comparison score between default Clustal W and Muscle alignments
  3 Level of resolution (consensus fork index) of the strict consensus tree built from the two bootstrap trees from Clustal W and Muscle alignments.
  4 Trees are unrooted majority rule consensus trees from 'fast bootstrap parsimony' algorithm in PAUP* 4.0 using default ClustalW alignments. Expect performance to deteriorate with low MAD or Q scores, large number of taxa, and high sequence divergence (largely owing to alignment problems). Only trees for (taxon) phylogenetically informative clusters with fewer than 1000 sequences are generated.


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