Cluster set at subtree whose root is 'Plasmodium vinckei'

Click here to see taxon by cluster Data Availability Matrix
Cluster IDParent clusterTaxIDsGIsLminLmaxMAD1Q2Tcfi3Defline of longest sequenceTree4
0111607607 1.000- 0.000Plasmodium vinckei strain R8 cytochrome b (cytb) gene, partial cds; mitochondrial.-
12589371005 0.973- 0.000Plasmodium vinckei vinckei strain VIBA Cy Pl cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial.
21058499530 0.963- 0.000Plasmodium vinckei vinckei isolate VIBA Cy Pl caseinolytic protease C gene, partial cds; apicoplast.
31111206206 1.000- 0.000Plasmodium vinckei strain R8 adenylosuccinate lyase (asl) gene, partial cds.-
4611116291629 1.000- 0.000Plasmodium vinckei cysteine proteinase gene sequence.-
52111546546 1.000- 0.000Plasmodium vinckei dihydrofolate reductase (DHFR) gene, partial cds.-
6221110051005 1.000- 0.000Plasmodium vinckei vinckei (clones pRV(25,30)) cell division cycle protein (cdc2) gene, intron.-
7621113041304 1.000- 0.000Plasmodium vinckei SERA-1 gene, partial cds.-
8631122442244 1.000- 0.000Plasmodium vinckei SERA-2 gene, partial cds.-
9641114161416 1.000- 0.000Plasmodium vinckei SERA-3 gene, partial cds.-
101812291291 1.000- 0.000Plasmodium vinckei strain V-52 merozoite surface protein-1 gene, partial cds.-
11655512721395 0.945- 0.000Plasmodium vinckei lentum circumsporozoite protein (CS) gene, complete cds.
12381110541054 1.000- 0.000Plasmodium vinckei fructose 1,6-bisphosphate aldolase gene, partial cds.-
13661114541454 1.000- 0.000Plasmodium vinckei vinckepain-2 mRNA, complete cds.-
1444589961035 0.990- 0.000Plasmodium vinckei lentum strain 194ZZ cytochrome b (cytb) gene, partial cds; mitochondrial.
155757628631 0.997- 0.000Plasmodium vinckei lentum strain 194ZZ cysteine protease gene, partial cds.
165857518518 1.000- 0.000Plasmodium vinckei vinckei strain VIBA Cy Pl dihydrofolate reductase gene, partial cds.
175946650673 0.989- 0.000Plasmodium vinckei lentum strain 194ZZ TufA gene, partial cds; apicoplast.
186057549647 0.961- 0.000Plasmodium vinckei isolate EL ORF470 gene, partial cds; apicoplast.
196724489489 1.000- 0.000Plasmodium vinckei isolate VIBA CyO RNA polymerase II (Rbp1) gene, partial cds.-
209311279279 1.000- 0.000Plasmodium vinckei vinckei erythrocyte binding-like protein (EBL) gene, partial cds.-
215422642648 0.995- 0.000Plasmodium vinckei vinckei ookinete surface antigen-like protein Pfs28 gene, complete cds.-
221591118391839 1.000- 0.000Plasmodium vinckei vinckei pviebl gene for erythrocyte-binding-like protein, partial cds.-
2318911630630 1.000- 0.000Plasmodium vinckei petteri glutathione S-transferase mRNA, complete cds.-

  1 Maximum Alignment Density
  2 "Q" alignment comparison score between default Clustal W and Muscle alignments
  3 Level of resolution (consensus fork index) of the strict consensus tree built from the two bootstrap trees from Clustal W and Muscle alignments.
  4 Trees are unrooted majority rule consensus trees from 'fast bootstrap parsimony' algorithm in PAUP* 4.0 using default ClustalW alignments. Expect performance to deteriorate with low MAD or Q scores, large number of taxa, and high sequence divergence (largely owing to alignment problems). Only trees for (taxon) phylogenetically informative clusters with fewer than 1000 sequences are generated.


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