Cluster set at subtree whose root is 'Plasmodium yoelii'

Click here to see taxon by cluster Data Availability Matrix
Cluster IDParent clusterTaxIDsGIsLminLmaxMAD1Q2Tcfi3Defline of longest sequenceTree4
122469821005 0.995- 0.000Plasmodium yoelii strain EL cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial.
131047500641 0.823- 0.000Plasmodium yoelii yoelii caseinolytic protease C (clpC) gene, partial cds; apicoplast.
4096414619765 0.846- 0.000Plasmodium yoelii merozoite surface protein 4/5 (MSP4/5) gene, complete cds.
69444510101035 0.995- 0.000Plasmodium yoelii clone 17X cytochrome b gene, partial cds; mitochondrial gene for mitochondrial product.
795745625625 1.000- 0.000Plasmodium yoelii killicki strain 193L cysteine protease gene, partial cds.
805845518518 1.000- 0.000Plasmodium yoelii nigeriensis strain N67 dihydrofolate reductase gene, partial cds.
815945660674 0.991- 0.000Plasmodium yoelii killicki strain 193L TufA gene, partial cds; apicoplast.
826045649649 1.000- 0.000Plasmodium yoelii killicki isolate 193L ORF470 gene, partial cds; apicoplast.
846745489489 1.000- 0.000Plasmodium yoelii nigeriensis isolate N67 RNA polymerase II (Rbp1) gene, partial cds.

  1 Maximum Alignment Density
  2 "Q" alignment comparison score between default Clustal W and Muscle alignments
  3 Level of resolution (consensus fork index) of the strict consensus tree built from the two bootstrap trees from Clustal W and Muscle alignments.
  4 Trees are unrooted majority rule consensus trees from 'fast bootstrap parsimony' algorithm in PAUP* 4.0 using default ClustalW alignments. Expect performance to deteriorate with low MAD or Q scores, large number of taxa, and high sequence divergence (largely owing to alignment problems). Only trees for (taxon) phylogenetically informative clusters with fewer than 1000 sequences are generated.


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