Cluster set at subtree whose root is 'Microsporidia'

Click here to see taxon by cluster Data Availability Matrix
Cluster IDParent clusterTaxIDsGIsLminLmaxMAD1Q2Tcfi3Defline of longest sequenceTree4
4-1493741382108 0.499- 0.000Nosema antheraeae large subunit ribosomal RNA gene, partial sequence; and internal transcribed spacer, small subunit ribosomal RNA gene, intergenic spacer, and 5S ribosomal RNA gene, complete sequence.
7-4427552968 0.980- 0.000Nosema trichoplusiae RNA polymerase II largest subunit (RPB1) gene, partial cds.
8-11137001211 0.871- 0.000Nosema plutellae isolate PX2 beta-tubulin gene, partial cds.
9-4512021202 1.000- 0.000Nosema sp. PX1 alpha-tubulin gene, partial cds.
13-55193292 0.809- 0.000Nosema bombycis ribosomal RNA large subunit.
17-163320854864 0.734- 0.000Nosema apis small subunit ribosomal RNA gene, internal transcribed spacer and large subunit ribosomal RNA gene, complete sequence.
30-4413271329 1.000- 0.000Nosema plutellae isolate PX2 DNA-dependent RNA polymerase II largest subunit gene, partial cds.
31-1023502783 0.707- 0.000Nosema disstriae large subunit ribosomal RNA gene, partial sequence; internal transcribed spacer, complete sequence; and small subunit ribosomal RNA gene, partial sequence.
48-46358403 0.950- 0.000Nosema antheraeae isolate NbZC small subunit ribosomal RNA gene, partial sequence.
56-7187156486 0.685- 0.000Enterocytozoon bieneusi genotype Q small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer, complete sequence and large subunit ribosomal RNA gene, partial sequence.
65-640100253 0.848- 0.000Nosema ceranae isolate KS38 16S ribosomal RNA gene, partial sequence.
68-1015232680 0.615- 0.000Vairimorpha lymantriae 16S ribosomal RNA (16S rRNA), 3'end; non-transcribed spacer; 28S ribosomal RNA (28S rRNA), 5'end.
77-69825861980 0.690- 0.000Pseudoloma neurophilia small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer, complete sequence; and large subunit ribosomal RNA gene, partial sequence.
80-6613351371 0.985- 0.000Antonospora scoticae small subunit ribosomal RNA gene, complete sequence.
84-531107770 0.552- 0.000Encephalitozoon hellem genotype 1A internal transcribed spacer, partial sequence.
90-498681077 0.934- 0.000Encephalitozoon hellem methionine aminopeptidase type 2 (MetAP2) gene, complete cds.
102-412318628 0.905- 0.000Encephalitozoon hellem partial interB gene for putative interB family protein, clone Bsub2-GAR_clo16_030404_V242_ENCHE.
143-518510531834 0.749- 0.000Gurleya vavrai isolate ALO-12 16S small subunit ribosomal RNA gene and internal transcribed spacer, complete sequence; and large subunit ribosomal RNA gene, partial sequence.
154-81011301922 0.796- 0.000Tubulinosema kingi small subunit ribosomal RNA gene, partial sequence; intergenic spacer, complete sequence; and large subunit ribosomal RNA gene, partial sequence.
163-91210272022 0.774- 0.000Pseudonosema cristatellae small subunit ribosomal RNA gene and putative internal transcribed spacer, complete sequences; and putative large subunit ribosomal RNA gene, partial sequence.
196-4116961750 0.742- 0.000Thelohania contejeani 16S rRNA gene (partial), 23S rRNA gene (partial) and ITS1, isolate Tcc3APb.
213-77522597 0.943- 0.000Episeptum sp. MH17 small subunit ribosomal RNA gene, partial sequence.
214-911346670 0.783- 0.000Microsporidia sp. 'Dragitschevo' small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer, complete sequence; and large subunit ribosomal RNA gene, partial sequence.
302-1011267384 0.857- 0.000Dictyocoela sp. L11 16S small subunit ribosomal RNA gene, partial sequence.

  1 Maximum Alignment Density
  2 "Q" alignment comparison score between default Clustal W and Muscle alignments
  3 Level of resolution (consensus fork index) of the strict consensus tree built from the two bootstrap trees from Clustal W and Muscle alignments.
  4 Trees are unrooted majority rule consensus trees from 'fast bootstrap parsimony' algorithm in PAUP* 4.0 using default ClustalW alignments. Expect performance to deteriorate with low MAD or Q scores, large number of taxa, and high sequence divergence (largely owing to alignment problems). Only trees for (taxon) phylogenetically informative clusters with fewer than 1000 sequences are generated.


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