Cluster set at subtree whose root is 'Porifera'

Click here to see taxon by cluster Data Availability Matrix
Cluster IDParent clusterTaxIDsGIsLminLmaxMAD1Q2Tcfi3Defline of longest sequenceTree4
19-24247951648 0.756- 0.000Axinella verrucosa mRNA for elongation factor 1 alpha (ef1a gene).
34-8811611514 0.823- 0.000Geodia cynodium mRNA for tubilin.
59-2532994172759 0.622- 0.000Scypha ciliata 18S rRNA gene (partial), ITS1, 5.8S rRNA gene, ITS2 and 5S rRNA gene (partial).
60-72114266664 0.769- 0.000Dysidea cf. granulosa-Double Reef 5.8S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
63-1803724551206 0.521- 0.000Biemna fistulosa mitochondrial partial cox1 gene for cytochrome c oxidase subunit I, specimen voucher TAU:25197.
64-25276681222 0.717- 0.000Stryphnus mucronatus 5.8S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
65-12121802023929 0.813- 0.000Ephydatia muelleri mitochondrion, complete genome.
67-2162236811755 0.667- 0.000Ptilocaulis sp. NTM Z4466 28S large subunit ribosomal RNA gene, partial sequence.
71-18189031281 0.946- 0.000Leucilla nuttingi ATP synthase beta subunit (ATPB) mRNA, partial cds.
72-1919642792 0.983- 0.000Clathrina cerebrum catalase (Cat) mRNA, partial cds.
73-55588588 1.000- 0.000Halichondria sp. KJP-2009 fructose-bisphosphate aldolase mRNA, partial cds.
78-191930554101 0.864- 0.000Amphimedon queenslandica large subunit ribosomal RNA gene, partial sequence.
79-7386419556 0.921- 0.000Callyspongia ramosa voucher MKB3091 cytochrome oxidase subunit I (cox1) gene, partial cds; mitochondrial.
80-120170253747 0.645- 0.000Sympagella nux 28S rRNA gene.
81-1220381543 0.802- 0.000Halichondria bowerbanki isolate HalBow30 elongation factor-1 alpha gene, partial cds.
82-5511521603 0.775- 0.000Lubomirskia baicalensis mRNA for tubulin alpha (tuba gene).
88-8812452327 0.635- 0.000Sycon raphanus mRNA for heat shock protein 70.
123-1131534658 0.942- 0.000Tethya wilhelma cytochrome oxidase subunit I gene, partial cds; mitochondrial.
124-4557400631 0.822- 0.000Timea cf. centrifera voucher WAMZ9801 28S ribosomal RNA gene, partial sequence.
126-1319644757 0.926- 0.000Clathrina sp. RFW-2001 large subunit ribosomal RNA (rrnL) gene, partial sequence; mitochondrial gene for mitochondrial product.
128-32120672813 0.968- 0.000Placospongia sp. UCMPWC1094 sequence type 81 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
129-860722889 0.947- 0.000Agelas sp. QMG317484 18S rRNA gene (partial), 5.8S rRNA gene, 28S rRNA gene (partial), ITS1 and ITS2, specimen voucher QMG317484, clone 306_23.
138-2022117246 0.537- 0.000Potamolepis sp. ERM-2005 homeobox protein demox gene, partial cds.
143-536384490 0.900- 0.000Chondrilla australiensis 28S ribosomal RNA gene, partial sequence.
144-415385627 0.929- 0.000Chondrilla nucula isolate 44It internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence.
149-66532572 0.979- 0.000Niphates digitalis 18S ribosomal RNA gene, partial sequence.
152-1719420501 0.949- 0.000Raspailia sp. G315648 28S large subunit ribosomal RNA gene, partial sequence.
154-3862489953 0.810- 0.000Baikalospongia intermedia voucher BK304 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
163-77506781 0.863- 0.000Baikalospongia intermedia silicatein alpha 4 (silA4) gene, exons 3 through 6 and partial cds.
276-44120120 1.000- 0.000Hymeniacidon sanguinea 5S ribosomal RNA.
375-1016600699 0.885- 0.000Clathrina sp. RFW-2001 cytochrome c oxidase subunit III gene, partial cds; mitochondrial gene for mitochondrial product.
384-68525529 0.997- 0.000Halichondria sp. Halsp-5 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence.
390-547529964 0.586- 0.000Hymeniacidon heliophila 18S ribosomal RNA gene, partial sequence, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, complete sequence, and 28S ribosomal RNA gene, partial sequence.
392-7710451111 0.968- 0.000Axinella damicornis 5.8S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
433-48722723 1.000- 0.000Scopalina canariensis partial 28S rRNA gene, haplotype 2.
442-45442485 0.934- 0.000Stylissa carteri voucher G318268 28S large subunit ribosomal RNA gene, partial sequence.
471-44467507 0.973- 0.000Thrinacophora sp. G312642 28S large subunit ribosomal RNA gene, partial sequence.
509-1426415892 0.733- 0.000Aplysina aerophoba 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
510-522340431 0.833- 0.000Aplysina cavernicola clone 2 5.8S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
565-52647311048 0.949- 0.000Leucetta chagosensis 18S rRNA gene, ITS1, 5.8S rRNA gene, ITS2 and partial 28S rRNA gene, specimen voucher 01SNFP_4, allele b.
616-4344413568 0.876- 0.000Heterochone calyx mitochondrial partial 16S rRNA gene.
631-66428534 0.931- 0.000Hyalonema sp. HBOI 23-VIII-93-4-001 partial 28S rRNA gene, isolated from Jamaica.

  1 Maximum Alignment Density
  2 "Q" alignment comparison score between default Clustal W and Muscle alignments
  3 Level of resolution (consensus fork index) of the strict consensus tree built from the two bootstrap trees from Clustal W and Muscle alignments.
  4 Trees are unrooted majority rule consensus trees from 'fast bootstrap parsimony' algorithm in PAUP* 4.0 using default ClustalW alignments. Expect performance to deteriorate with low MAD or Q scores, large number of taxa, and high sequence divergence (largely owing to alignment problems). Only trees for (taxon) phylogenetically informative clusters with fewer than 1000 sequences are generated.


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