Cluster set at subtree whose root is 'Oxymonadida'

Click here to see taxon by cluster Data Availability Matrix
Cluster IDParent clusterTaxIDsGIsLminLmaxMAD1Q2Tcfi3Defline of longest sequenceTree4
0-3610381185 0.938- 0.000Dinenympha exilis mRNA for elongation factor 1 alpha, partial cds.-
1-184118862158 0.936- 0.000Oxymonas sp. NcOxA gene for small subunit ribosomal RNA, partial sequence.
2-34460573 0.901- 0.000Symbiotic protist of Reticulitermes speratus RsSmRab1_4 mRNA for Small G Protein RAB, partial cds.-
3-210552562 0.995- 0.000Dinenympha exilis RsSmRab32_10 mRNA for Small G Protein RAB, partial cds.-
4-6258971634 0.715- 0.000Monocercomonoides sp. PA clone 4/4 tubulin alpha subunit mRNA, complete cds.
5-24540619 0.966- 0.000Symbiotic protist of Reticulitermes speratus RsSmRab6_4 mRNA for Small G Protein RAB, partial cds.-
6-26585590 0.994- 0.000Symbiotic protist of Reticulitermes speratus RsSmRab7_8 mRNA for Small G Protein RAB, partial cds.-
7-23595601 0.997- 0.000Pyrsonympha grandis RsSmRab11_1 mRNA for Small G Protein RAB, partial cds.-
8-11285285 1.000- 0.000Oxymonas sp. JF2002 partial 18S rRNA gene.-
9-3811201461 0.842- 0.000Monocercomonoides sp. PA clone 1/1 tubulin beta subunit mRNA, complete cds.-
10-1311951195 1.000- 0.000Streblomastix strix clone 3 elongation factor-1 alpha gene, partial cds.-
11-1510811696 0.854- 0.000Streblomastix strix clone 1 heat shock protein 90 gene, partial cds.-
12-15767775 0.997- 0.000Streblomastix strix clone 4 beta-tubulin mRNA, partial cds.-
13-13438529 0.929- 0.000Streblomastix strix clone 2 elongation factor-1 alpha mRNA, partial cds.-
14-138531281 0.778- 0.000Streblomastix strix clone 1 heat shock protein 90 mRNA, partial cds.-
15-1224272427 1.000- 0.000Streblomastix strix clone 1 small subunit ribosomal RNA gene, partial sequence.-
16-1324042670 0.937- 0.000Streblomastix strix PPDK gene, partial cds.-
17-11962962 1.000- 0.000Streblomastix strix conserved hypothetical protein gene, complete cds.-
18-11486486 1.000- 0.000Streblomastix strix nuclear transport factor 2 (NTF2) gene, complete cds.-
19-11769769 1.000- 0.000Streblomastix strix large subunit ribosomal protein 9 RPS9 (rps9) gene, partial cds.-
20-1110611061 1.000- 0.000Streblomastix strix cathepsin B (cathB1) gene, partial cds.-
21-11553553 1.000- 0.000Streblomastix strix RPL21 (rpl21) gene, complete cds.-
22-1114411441 1.000- 0.000Streblomastix strix NAD-dependent glutamate dehydrogenase gene, complete cds.-
23-11570570 1.000- 0.000Streblomastix strix small subunit ribosomal protein 7 (rps7) gene, complete cds.-
24-11676676 1.000- 0.000Streblomastix strix RPL18 (rpl18) gene, partial cds.-
25-11505505 1.000- 0.000Streblomastix strix cyclophilin gene, partial cds.-
26-1112431243 1.000- 0.000Streblomastix strix cathepsin B gene, partial cds.-
27-1113021302 1.000- 0.000Streblomastix strix UAP56/BAT1 gene, partial cds.-
28-11831831 1.000- 0.000Streblomastix strix UPF1 gene, partial cds.-
29-1114751475 1.000- 0.000Streblomastix strix RPL4 gene, partial cds.-
30-13981993 0.996- 0.000Monocercomonoides sp. PA cathepsin B1 cysteine protease (CPB1) mRNA, complete cds.-
31-1110141014 1.000- 0.000Monocercomonoides sp. PA cathepsin B4 cysteine protease (CPB4) mRNA, complete cds.-
32-1110321032 1.000- 0.000Monocercomonoides sp. PA cathepsin B5 cysteine protease (CPB5) mRNA, complete cds.-
33-1110031003 1.000- 0.000Monocercomonoides sp. PA cathepsin B6 cysteine protease (CPB6) mRNA, complete cds.-
34-129951020 0.988- 0.000Monocercomonoides sp. PA cathepsin B8 cysteine protease (CPB8) mRNA, partial cds.-
35-1114501450 1.000- 0.000Monocercomonoides sp. PA cathepsin B9 cysteine protease (CPB9) mRNA, partial cds.-
36-1116981698 1.000- 0.000Monocercomonoides sp. PA cathepsin B10 cysteine protease (CPB10) mRNA, complete cds.-
37-1114271427 1.000- 0.000Monocercomonoides sp. PA cathepsin B11 cysteine protease (CPB11) mRNA, partial cds.-
38-2510011544 0.719- 0.000Monocercomonoides sp. PA clone 1/2 translation elongation factor-1 alpha mRNA, complete cds.-
39-11777777 1.000- 0.000Monocercomonoides sp. PA clone 2/2 translation elongation factor-1 alpha mRNA, partial cds.-
40-2211491187 0.984- 0.000Monocercomonoides sp. PA203 glyceraldehyde-3-phosphate dehydrogenase mRNA, complete cds.-
41-11579579 1.000- 0.000Symbiotic protist of Reticulitermes speratus RsSmRab1_5 mRNA for Small G Protein RAB, partial cds.-
42-12574577 0.997- 0.000Symbiotic protist of Reticulitermes speratus RsSmRab2_2 mRNA for Small G Protein RAB, partial cds.-
43-11584584 1.000- 0.000Symbiotic protist of Reticulitermes speratus RsSmRab5 mRNA for Small G Protein RAB, partial cds.-
44-1129272927 1.000- 0.000Monocercomonoides sp. PA203 18S ribosomal RNA gene, partial sequence.-
45-11881881 1.000- 0.000Monocercomonoides sp. PA203 polyubiquitin mRNA, complete cds.-
46-1116581658 1.000- 0.000Monocercomonoides sp. PA203 translation elongation factor 2 mRNA, partial cds.-
47-1119701970 1.000- 0.000Monocercomonoides sp. PA203 tubulin gamma subunit mRNA, complete cds.-
48-1122592259 1.000- 0.000Monocercomonoides sp. PA203 cytosolic heat shock protein 70-like protein mRNA, complete cds.-
49-1124092409 1.000- 0.000Monocercomonoides sp. PA203 heat shock protein 90-like protein mRNA, complete cds.-
50-1114081408 1.000- 0.000Monocercomonoides sp. PA203 enolase mRNA, partial cds.-
51-1111391139 1.000- 0.000Monocercomonoides sp. PA203 fructose bisphosphate aldolase mRNA, partial cds.-
52-1116381638 1.000- 0.000Monocercomonoides sp. PA203 hexokinase 1 mRNA, complete cds.-
53-1117041704 1.000- 0.000Monocercomonoides sp. PA203 hexokinase 2 mRNA, partial cds.-
54-1116151615 1.000- 0.000Monocercomonoides sp. PA203 pyrophosphate:fructose 6-phosphate phosphotransferase mRNA, partial cds.-
55-1113831383 1.000- 0.000Monocercomonoides sp. PA203 phosphoglycerate kinase mRNA, complete cds.-
56-1119241924 1.000- 0.000Monocercomonoides sp. PA203 phosphoglycerate mutase mRNA, complete cds.-
57-1117301730 1.000- 0.000Monocercomonoides sp. PA203 pyruvate kinase mRNA, complete cds.-
58-1227432803 0.989- 0.000Monocercomonoides sp. PA203 pyruvate phosphate dikinase 1 mRNA, complete cds.-
59-11898898 1.000- 0.000Monocercomonoides sp. PA203 triose-phosphate isomerase mRNA, partial cds.-
60-11954954 1.000- 0.000Incisitermes marginipennis oxymonad symbiont clone GhImp29 partial 18S rRNA gene, clone GhImp29.-

  1 Maximum Alignment Density
  2 "Q" alignment comparison score between default Clustal W and Muscle alignments
  3 Level of resolution (consensus fork index) of the strict consensus tree built from the two bootstrap trees from Clustal W and Muscle alignments.
  4 Trees are unrooted majority rule consensus trees from 'fast bootstrap parsimony' algorithm in PAUP* 4.0 using default ClustalW alignments. Expect performance to deteriorate with low MAD or Q scores, large number of taxa, and high sequence divergence (largely owing to alignment problems). Only trees for (taxon) phylogenetically informative clusters with fewer than 1000 sequences are generated.


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