Cluster set at subtree whose root is 'Pleurodira'

Click here to see taxon by cluster Data Availability Matrix
Cluster IDParent clusterTaxIDsGIsLminLmaxMAD1Q2Tcfi3Defline of longest sequenceTree4
0077390755 0.883- 0.000Phrynops williamsi mitochondrial cytochrome c oxidase subunit I-like (COI) gene, partial sequence.
113134349677 0.713- 0.000Phrynops hogei 16S ribosomal RNA gene, partial sequence; mitochondrial gene for mitochondrial product.
28712417417 1.000- 0.000Platemys platycephala isolate AK10229 cytochrome b (cytb) gene, partial cds; mitochondrial.
32814732737 0.997- 0.000Pelomedusa subrufa NADH dehydrogenase subunit 4 (ND4) gene, partial cds; mitochondrial.
542525252414 0.931- 0.000Pelusios sinnuatus cytochrome c oxidase subunit 1 (COI) gene, partial cds; mitochondrial.
872838298398 0.948- 0.000Erymnochelys madagascariensis mitochondrial partial 12S rRNA gene, isolate ErymadaI.
98141244881044 0.524- 0.000Peltocephalus dumeriliana mitochondrial partial cytb gene for cytochrome b.
1091720925977 0.969- 0.000Phrynops gibbus RNA fingerprint fragment 35 (R35) gene, intron 1.
12117827902793 0.999- 0.000Podocnemis expansa recombination activating gene 1 (RAG-1) gene, partial cds.
3332819355466 0.855- 0.000Elseya sp. albagula haplotype ESP11 control region, partial sequence; mitochondrial.
435868610718 0.979- 0.000Pelomedusa subrufa brain-derived neurotrophic factor (BDNF) gene, partial cds.
441161111576580 0.999- 0.000Pelomedusa subrufa neurotrophin-3 (NT-3) gene, partial cds.
4511766373440 0.970- 0.000Pelomedusa subrufa proopiomelanocortin (POMC) mRNA, partial sequence.
4611866728862 0.937- 0.000Erymnochelys madagascariensis recombination activating protein 1 (RAG1) gene, partial cds.
49277783805 0.978- 0.000Podocnemis sextuberculata mitochondrial nd4 gene (partial), tRNA-His gene and tRNA-Ser gene (partial).
50599106361193 0.580- 0.000Pelomedusa subrufa recombination activating protein 2 (RAG-2) gene, partial cds.
102178417324520 0.913- 0.000Podocnemis unifilis isolate PounB4 mitochondrial control region, partial sequence.

  1 Maximum Alignment Density
  2 "Q" alignment comparison score between default Clustal W and Muscle alignments
  3 Level of resolution (consensus fork index) of the strict consensus tree built from the two bootstrap trees from Clustal W and Muscle alignments.
  4 Trees are unrooted majority rule consensus trees from 'fast bootstrap parsimony' algorithm in PAUP* 4.0 using default ClustalW alignments. Expect performance to deteriorate with low MAD or Q scores, large number of taxa, and high sequence divergence (largely owing to alignment problems). Only trees for (taxon) phylogenetically informative clusters with fewer than 1000 sequences are generated.


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