Cluster set at subtree whose root is 'Pleurodira'

Click here to see taxon by cluster Data Availability Matrix
Cluster IDParent clusterTaxIDsGIsLminLmaxMAD1Q2Tcfi3Defline of longest sequenceTree4
0077390755 0.883- 0.000Phrynops williamsi mitochondrial cytochrome c oxidase subunit I-like (COI) gene, partial sequence.
113134349677 0.713- 0.000Phrynops hogei 16S ribosomal RNA gene, partial sequence; mitochondrial gene for mitochondrial product.
28712417417 1.000- 0.000Platemys platycephala isolate AK10229 cytochrome b (cytb) gene, partial cds; mitochondrial.
32814732737 0.997- 0.000Pelomedusa subrufa NADH dehydrogenase subunit 4 (ND4) gene, partial cds; mitochondrial.
542525252414 0.931- 0.000Pelusios sinnuatus cytochrome c oxidase subunit 1 (COI) gene, partial cds; mitochondrial.
872838298398 0.948- 0.000Erymnochelys madagascariensis mitochondrial partial 12S rRNA gene, isolate ErymadaI.
98141244881044 0.524- 0.000Peltocephalus dumeriliana mitochondrial partial cytb gene for cytochrome b.
1091720925977 0.969- 0.000Phrynops gibbus RNA fingerprint fragment 35 (R35) gene, intron 1.
12117827902793 0.999- 0.000Podocnemis expansa recombination activating gene 1 (RAG-1) gene, partial cds.
3332819355466 0.855- 0.000Elseya sp. albagula haplotype ESP11 control region, partial sequence; mitochondrial.
435868610718 0.979- 0.000Pelomedusa subrufa brain-derived neurotrophic factor (BDNF) gene, partial cds.
441161111576580 0.999- 0.000Pelomedusa subrufa neurotrophin-3 (NT-3) gene, partial cds.
4511766373440 0.970- 0.000Pelomedusa subrufa proopiomelanocortin (POMC) mRNA, partial sequence.
4611866728862 0.937- 0.000Erymnochelys madagascariensis recombination activating protein 1 (RAG1) gene, partial cds.
49277783805 0.978- 0.000Podocnemis sextuberculata mitochondrial nd4 gene (partial), tRNA-His gene and tRNA-Ser gene (partial).
50599106361193 0.580- 0.000Pelomedusa subrufa recombination activating protein 2 (RAG-2) gene, partial cds.
102178417324520 0.913- 0.000Podocnemis unifilis isolate PounB4 mitochondrial control region, partial sequence.

  1 Maximum Alignment Density
  2 "Q" alignment comparison score between default Clustal W and Muscle alignments
  3 Level of resolution (consensus fork index) of the strict consensus tree built from the two bootstrap trees from Clustal W and Muscle alignments.
  4 Trees are unrooted majority rule consensus trees from 'fast bootstrap parsimony' algorithm in PAUP* 4.0 using default ClustalW alignments. Expect performance to deteriorate with low MAD or Q scores, large number of taxa, and high sequence divergence (largely owing to alignment problems). Only trees for (taxon) phylogenetically informative clusters with fewer than 1000 sequences are generated.

Back to taxonomic hierarchy view