Cluster set at subtree whose root is 'unclassified Fungi'

Click here to see taxon by cluster Data Availability Matrix
Cluster IDParent clusterTaxIDsGIsLminLmaxMAD1Q2Tcfi3Defline of longest sequenceTree4
0-66626723 0.910- 0.000oat root associated fungus 00011 5S rRNA and partial 18S rRNA genes and ITS1 and 2, isolate OOO11.
3-2282733442339 0.431- 0.000Fungal sp. GMG_C6 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
9-55570750 0.881- 0.000Ectomycorrhizal root tip 133_Ny1.C-23.1 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
12-55504801 0.817- 0.000Mycorrhizal root tip MC1 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
15-277444461561621 0.382- 0.000Fungal endophyte isolate 4119 large subunit ribosomal RNA gene, partial sequence.-
18-2525352964 0.686- 0.000Ectomycorrhizal root tip 203_Ny3.O-32.2 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
22-3737517747 0.822- 0.000Ectomycorrhizal root tip 238_Ny3.B2-34.1 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
23-2323389790 0.758- 0.000Ectomycorrhizal root tip 250_Ny3.C-35.2 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
25-1313371621 0.867- 0.000Ectomycorrhizal root tip 49_Ny1.E1-18.1 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
33-6061315785 0.662- 0.000Soil fungal sp. DM2-087 gene for 28S rRNA, partial sequence.
43-2424277574 0.785- 0.000Fungal sp. CC2 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence.
44-55491536 0.952- 0.000Fungal sp. JH101 18S rRNA gene (partial), ITS1, 5.8S rRNA gene ITS2 and 28S rRNA gene (partial), strain JH101.
45-45450720 0.774- 0.000Fungal endophyte strain 3116 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
46-5456553670 0.923- 0.000Fungal sp. W246 17S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 25S ribosomal RNA gene, partial sequence.
48-3940683687 0.997- 0.000Fungal sp. K5 gene for 18S rRNA, partial sequence.
54-2828588601 0.989- 0.000fungal sp. 5H16-5p ITS1, 5.8S rRNA, ITS2 and partial 25S rRNA, strain 5H16-5p.
55-44397436 0.962- 0.000Fungal sp. R46 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
60-1313536644 0.924- 0.000Fungal sp. AB12 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
61-1212364613 0.928- 0.000Fungal endophyte sp. CEY 24 18S small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S large subunit ribosomal RNA gene, partial sequence.
62-99529635 0.900- 0.000Fungal endophyte isolate 9279 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
66-66506513 0.991- 0.000Fungal sp. TRN529 internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence.
67-1212521524 0.997- 0.000Fungal sp. TRN508 internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence.
69-1923473622 0.841- 0.000Fungal sp. Q18 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
72-44501544 0.950- 0.000Fungal sp. TRN471 internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence.
86-67535627 0.927- 0.000Root associated fungal sp. shylhd18 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
100-1415533691 0.860- 0.000Fungal sp. JW40-3 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
103-88585806 0.865- 0.000Fungal endophyte sp. JP12 gene for 18S ribosomal RNA, partial sequence.
107-114155393615 0.930- 0.000Fungal sp. DQY-1 26S ribosomal RNA gene, partial sequence.
108-56559574 0.981- 0.000Fungal yeast sp. DY11 26S ribosomal RNA gene, partial sequence.
118-5959652844 0.779- 0.000Fungal endophyte sp. RE0105 18S ribosomal RNA gene, partial sequence.
155-56502650 0.882- 0.000Fungal endophyte isolate 282C 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
173-55628645 0.989- 0.000fungal sp. 5DI9-5A ITS1, 5.8S rRNA, ITS2 and partial 25S rRNA, strain 5DI9-5A.
174-66622622 1.000- 0.000fungal sp. 5OPS2-1PL1 ITS1, 5.8S rRNA, ITS2 and partial 25S rRNA, strain 5OPS2-1PL1.
175-44551552 0.999- 0.000fungal sp. 5DI12-5B ITS1, 5.8S rRNA, ITS2 and partial 25S rRNA, strain 5DI12-5B.
184-1010599670 0.984- 0.000Fungal sp. MR09 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
202-711511610 0.912- 0.000Fungal endophyte sp. P1406O internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence.
221-50503821071 0.527- 0.000Hyaloscypha hepaticola isolate M339 small subunit ribosomal RNA gene, partial sequence; mitochondrial.
222-1313609862 0.902- 0.000Epibryon diaphanum isolate M122 RNA polymerase II second largest subunit (RPB2) gene, partial cds.
232-55685698 0.988- 0.000Fungal sp. 69 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
252-44561597 0.982- 0.000Fungal sp. BB8 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
268-2626542900 0.899- 0.000Hyaloscypha hepaticola isolate M171 RNA polymerase II second largest subunit (RPB2) gene, partial cds.
284-44903923 0.995- 0.000Fungal sp. ARIZ B179cB 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.

  1 Maximum Alignment Density
  2 "Q" alignment comparison score between default Clustal W and Muscle alignments
  3 Level of resolution (consensus fork index) of the strict consensus tree built from the two bootstrap trees from Clustal W and Muscle alignments.
  4 Trees are unrooted majority rule consensus trees from 'fast bootstrap parsimony' algorithm in PAUP* 4.0 using default ClustalW alignments. Expect performance to deteriorate with low MAD or Q scores, large number of taxa, and high sequence divergence (largely owing to alignment problems). Only trees for (taxon) phylogenetically informative clusters with fewer than 1000 sequences are generated.


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