Cluster set at subtree whose root is 'Ceratophyllales'

Click here to see taxon by cluster Data Availability Matrix
Cluster IDParent clusterTaxIDsGIsLminLmaxMAD1Q2Tcfi3Defline of longest sequenceTree4
0-11676676 1.000- 0.000Ceratophyllum demersum chloroplast rpl2, trnH, psbA genes, partial cds and complete sequence.-
1-1110261026 1.000- 0.000Ceratophyllum demersum chloroplast rpl2, rps19, rpl22, rps3 genes, partial and complete cds.-
2-2412391254 0.995- 0.000Ceratophyllum demersum ATPase alpha subunit (atp1) gene, partial cds; mitochondrial gene for mitochondrial product.-
3-1214131415 0.999- 0.000Ceratophyllum demersum cytochrome oxidase subunit 1 (coxI) gene, partial cds; mitochondrial.-
4-2329113320 0.957- 0.000Ceratophyllum demersum 26S ribosomal RNA gene, complete sequence.-
5-1119051905 1.000- 0.000Ceratophyllum demersum trnT-trnL intergenic spacer, trnL gene and trnL-trnF intergenic spacer sequence.-
6-414612963 0.699- 0.000Ceratophyllum echinatum isolate 36 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 26S ribosomal RNA gene, partial sequence.
7-34443665 0.917- 0.000Ceratophyllum echinatum maturase K (matK) gene, partial cds; chloroplast.-
8-34423543 0.835- 0.000Ceratophyllum demersum from USA trnK gene, intron; chloroplast.-
9-11903903 1.000- 0.000Ceratophyllum demersum petB-petD intergenic spacer, partial sequence; and PetD (petD) gene, intron and partial cds; chloroplast.-
10-3517331784 0.985- 0.000Ceratophyllum echinatum isolate 18 small subunit ribosomal RNA gene, partial sequence.-
11-2311831348 0.955- 0.000Ceratophyllum submersum ribulose-1,5-bisphosphate carboxylase oxygenase (rbcL) gene, partial cds; chloroplast gene for chloroplast product.-
12-2313931465 0.983- 0.000Ceratophyllum submersum AtpB (atpB) gene, partial cds; chloroplast gene for chloroplast product.-
13-2416431950 0.922- 0.000Ceratophyllum demersum small subunit ribosomal RNA gene, partial sequence; mitochondrial gene for mitochondrial product.-
14-2233753548 0.976- 0.000Ceratophyllum demersum large subunit ribosomal RNA gene, partial sequence; mitochondrial.-
15-14829858 0.992- 0.000Ceratophyllum demersum CHS1 gene, partial cds.-
16-2211931196 0.999- 0.000Ceratophyllum submersum NADH dehydrogenase subunit 5 (nad5) gene, partial cds; mitochondrial.-
17-2223762419 0.991- 0.000Ceratophyllum submersum RNA polymerase beta chain (rpoC2) gene, partial cds; chloroplast.-
18-1126552655 1.000- 0.000Ceratophyllum demersum large subunit ribosomal RNA gene, partial sequence; chloroplast.-
19-1114751475 1.000- 0.000Ceratophyllum demersum small subunit ribosomal RNA gene, partial sequence; chloroplast.-
20-1110431043 1.000- 0.000Ceratophyllum demersum apocytochrome b (cob) gene, partial cds; mitochondrial.-
21-11359359 1.000- 0.000Ceratophyllum demersum glutathione reductase (GR) mRNA, partial cds.-
22-11841841 1.000- 0.000Ceratophyllum demersum isolate 1 atpB-rbcL intergenic spacer, partial sequence; chloroplast.-
23-11312312 1.000- 0.000Ceratophyllum demersum phytochrome (PHYA) gene, partial cds.-
24-11357357 1.000- 0.000Ceratophyllum demersum phytochrome (PHYA) gene, partial cds.-
25-11324324 1.000- 0.000Ceratophyllum demersum phytochrome (PHYE) gene, partial cds.-
26-11766766 1.000- 0.000C.demersum 28S rRNA gene (partial).-
27-11444444 1.000- 0.000C.demersum chloroplast ndhB mRNA.-
28-1137613761 1.000- 0.000Ceratophyllum demersum ribosomal protein S12 (rps12) gene, partial cds; ribosomal protein S7 (rps7) gene, complete cds; and NADH dehydrogenase subunit B (ndhB) gene, chloroplast genes encoding chloroplast proteins, partial cds.-
29-1112671267 1.000- 0.000Ceratophyllum demersum ribosomal protein L2 (rpl2) gene, partial cds; chloroplast gene for chloroplast product.-
30-1212762028 0.815- 0.000Ceratophyllum demersum NADH dehydrogenase subunit F (ndhF) gene, partial cds; chloroplast gene for chloroplast product.-
31-1120612061 1.000- 0.000Ceratophyllum demersum photosystem II D2 protein (psbD) and photosystem II CP43 protein (psbC) genes, partial cds; chloroplast genes for chloroplast products.-
32-11657657 1.000- 0.000Ceratophyllum demersum cytochrome b-559 alpha subunit (psbE) gene, partial cds; cytochrome b-559 beta subunit (psbF) and photosystem II subunit (psbL) genes, complete cds; and photosystem II subunit (psbJ) gene, partial cds; chloroplast genes for chloroplast products.-
33-1121912191 1.000- 0.000Ceratophyllum demersum photosystem II CP47 protein (psbB) gene, partial cds; photosystem II subunit (psbT) and photosystem II subunit (psbN) genes, complete cds; and photosystem II subunit (psbH) gene, chloroplast genes encoding chloroplast proteins, partial cds.-
34-11180180 1.000- 0.000Ceratophyllum demersum arginine decarboxylase gene, partial cds.-
35-11332332 1.000- 0.000Ceratophyllum demersum mitochondrial protein (rps2) gene, partial cds; mitochondrial gene for mitochondrial product.-
36-2218511855 0.999- 0.000Ceratophyllum demersum maturase (matR) gene, partial cds; mitochondrial gene for mitochondrial product.-
37-1113891389 1.000- 0.000Ceratophyllum demersum phytochrome A (PHYA) gene, partial cds.-
38-1110681068 1.000- 0.000Ceratophyllum demersum phytochrome C (PHYC) gene, partial cds.-
39-258111530 0.705- 0.000Ceratophyllum demersum maturase K (matK) gene, partial cds; chloroplast gene for chloroplast product.-
40-1130303030 1.000- 0.000Ceratophyllum demersum RNA polymerase II largest subunit (rpb1) mRNA, partial cds.-
41-11572572 1.000- 0.000Ceratophyllum demersum tRNA-Leu (trnL) gene, partial sequence; chloroplast.-

  1 Maximum Alignment Density
  2 "Q" alignment comparison score between default Clustal W and Muscle alignments
  3 Level of resolution (consensus fork index) of the strict consensus tree built from the two bootstrap trees from Clustal W and Muscle alignments.
  4 Trees are unrooted majority rule consensus trees from 'fast bootstrap parsimony' algorithm in PAUP* 4.0 using default ClustalW alignments. Expect performance to deteriorate with low MAD or Q scores, large number of taxa, and high sequence divergence (largely owing to alignment problems). Only trees for (taxon) phylogenetically informative clusters with fewer than 1000 sequences are generated.


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