Cluster set at subtree whose root is 'Ursus'

Click here to see taxon by cluster Data Availability Matrix
Cluster IDParent clusterTaxIDsGIsLminLmaxMAD1Q2Tcfi3Defline of longest sequenceTree4
05711370370 1.000- 0.000Ursus thibetanus DNA, microsatellite MSUT-1.-
15811420420 1.000- 0.000Ursus thibetanus DNA, microsatellite MSUT-2.-
25911392392 1.000- 0.000Ursus thibetanus DNA, microsatellite MSUT-3.-
36011260260 1.000- 0.000Ursus thibetanus DNA, microsatellite MSUT-4.-
46111479479 1.000- 0.000Ursus thibetanus DNA, microsatellite MSUT-5.-
56211653653 1.000- 0.000Ursus thibetanus DNA, microsatellite MSUT-6.-
66311577577 1.000- 0.000Ursus thibetanus DNA, microsatellite MSUT-7.-
76411309309 1.000- 0.000Ursus thibetanus DNA, microsatellite MSUT-8.-
86522254303 0.919- 0.000Ursus thibetanus DRD4 gene fordopamine receptor D4, partial cds.-
924610811191 0.938- 0.000Ursus thibetanus vwf gene for von Willebrand factor, partial cds, specimen_voucher: personal:Tetsuji Hosoda:TH127.
10348397397 1.000- 0.000Ursus arctos partial zfx gene for X-linked zinc finger protein.
1144912661306 0.983- 0.000Ursus arctos sex determining region Y protein (SRY) gene, complete cds.
12545380681 0.647- 0.000Ursus arctos partial tRNA-Sec gene for transfer RNA-Sec.
13647381459 0.951- 0.000Ursus maritimus partial fes gene for feline sarcoma protooncogene, exons 13-14.
1474412781407 0.959- 0.000Ursus arctos partial ube1y gene, exon 18.
15844209235 0.972- 0.000Ursus maritimus partial dio1 gene for deiodinase iodothyronine type I, exons 1.
16944491511 0.980- 0.000Ursus arctos partial dio2 gene for deiodinase iodothyronine type II, exon 2.
171044827979 0.936- 0.000Ursus thibetanus partial tg gene for thyroglobulin, exon 9.
181144310310 1.000- 0.000Ursus thibetanus partial sis gene for sodium iodide symporter, exons 6-7.
191244763814 0.976- 0.000Ursus thibetanus partial tshb gene for thyroid stimulating hormone beta subunit, exons 1-2.
201344372438 0.925- 0.000Ursus thibetanus partial trh gene for thyrotropin releasing hormone, exon 2.
21154710341274 0.953- 0.000Ursus arctos interphotoreceptor retinoid binding protein (irbp) gene, partial cds.
22164410111025 0.993- 0.000Ursus maritimus transthyretin gene, intron 1.
235322558558 1.000- 0.000Ursus arctos beta-fibrinogen gene, intron 4.-
245411602602 1.000- 0.000Ursus thibetanus beta-fibrinogen gene, intron 7.-
25242210441044 1.000- 0.000Ursus thibetanus NADH dehydrogenase 2 (ND2) gene, complete cds; mitochondrial.-
265511420420 1.000- 0.000Ursus thibetanus pancreatic ribonuclease (RNASE1) gene, partial cds.-
27329451670117044 0.986- 0.000Ursus thibetanus formosanus mitochondrion, complete genome.
283344728922 0.883- 0.000Ursus maritimus melanocortin 4 receptor (MC4R) gene, partial cds.
2937151412871289 0.790- 0.000Ursus arctos haplotype E10 NADH dehydrogenase subunit 6 (ND6) gene, partial cds; tRNA-Glu gene, complete sequence; cytochrome b (COB) gene, complete cds; and tRNA-Thr gene, complete sequence; mitochondrial.
30344971156 0.789- 0.000Ursus arctos mitochondrion tRNA-Thr and tRNA-Pro genes.
316611284284 1.000- 0.000Ursus thibetanus clone UT38 microsatellite sequence.-
326711403403 1.000- 0.000Ursus thibetanus clone UT31 microsatellite sequence.-
336811190190 1.000- 0.000Ursus thibetanus clone UT35 microsatellite sequence.-
346911448448 1.000- 0.000Ursus thibetanus clone UT36 microsatellite sequence.-
357011306306 1.000- 0.000Ursus thibetanus clone UT29 microsatellite sequence.-
367111481481 1.000- 0.000Ursus thibetanus clone UT25 microsatellite sequence.-
377211386386 1.000- 0.000Ursus thibetanus clone UT23 microsatellite sequence.-
387311470470 1.000- 0.000Ursus thibetanus clone UT4 microsatellite sequence.-
397411359359 1.000- 0.000Ursus thibetanus clone UT3 microsatellite sequence.-
407511252252 1.000- 0.000Ursus thibetanus clone UT1 microsatellite sequence.-
410101112811316 0.240- 0.000Ursus thibetanus ussuricus isolate Jangkang21 D-loop, complete sequence; mitochondrial.-
42384417561778 0.995- 0.000Ursus thibetanus ALAS2 gene, intron 7, partial sequence.
4339449951002 0.997- 0.000Ursus maritimus PLP gene for proteolipid protein, intron 3, partial sequence.
444044520529 0.988- 0.000Ursus thibetanus SMCX gene, intron 4, complete sequence.
4541448731088 0.901- 0.000Ursus arctos SMCY gene, intron 4, complete sequence.
464244852857 0.998- 0.000Ursus arctos ZFX gene, final intron, complete sequence.
47434410491053 0.999- 0.000Ursus maritimus ZFY gene, final intron, complete sequence.
484722963963 1.000- 0.000Ursus thibetanus APOB gene for apolipoprotein B, partial cds, specimen_voucher: personal:Tetsuji Hosoda:TH127.-
4949336931040 0.889- 0.000Ursus thibetanus brca1 gene for breast and ovarian cancer susceptibility protein 1, partial cds, specimen_voucher: personal:Tetsuji Hosoda:TH127.-
5046237741095 0.902- 0.000Ursus arctos RAG1 gene, partial cds, isolate: HS1420.-
51761110861086 1.000- 0.000Ursus thibetanus hsd17b3 mRNA for 17beta-hydroxysteroid dehydrogenase type 3, complete cds.-
52771116761676 1.000- 0.000Ursus thibetanus hsd3b mRNA for 3beta hydroxysteroid dehydrogenase, complete cds.-
5344517148387 0.580- 0.000Ursus thibetanus japonicus amelogenin (AMELX) gene, exon 6 and partial cds.
54134339744 0.716- 0.000Ursus arctos brain-derived neurotrophic factor (BDNF) gene, complete cds.-
5578118181 1.000- 0.000Ursus thibetanus MHC class II antigen (HLA-DMB) gene, exon 3 and partial cds.-
567911111111 1.000- 0.000Ursus thibetanus luteinizing hormone beta subunit precursor, gene, exon 2 and partial cds.-
578011633633 1.000- 0.000Ursus thibetanus follicle-stimulating hormone receptor gene, exon 10 and partial cds.-
588111240240 1.000- 0.000Ursus thibetanus zinc finger X-linked protein 1 gene, exon 7 and partial cds.-
598211573573 1.000- 0.000Ursus thibetanus clone ABB1 microsatellite sequence.-
608311398398 1.000- 0.000Ursus thibetanus clone ABB2 microsatellite sequence.-
618411692692 1.000- 0.000Ursus thibetanus clone ABB3 microsatellite sequence.-
628511353353 1.000- 0.000Ursus thibetanus clone ABB4 microsatellite sequence.-
638611658658 1.000- 0.000Ursus thibetanus clone ABB5 microsatellite sequence.-
648711400400 1.000- 0.000Ursus thibetanus clone ABB6 microsatellite sequence.-
658812487487 1.000- 0.000Ursus thibetanus clone ABB7 microsatellite sequence.-
668911379379 1.000- 0.000Ursus thibetanus clone ABB9 microsatellite sequence.-
679011287287 1.000- 0.000Ursus thibetanus clone ABB10 microsatellite sequence.-
689111368368 1.000- 0.000Ursus thibetanus clone ABB11 microsatellite sequence.-
699211343343 1.000- 0.000Ursus thibetanus clone ABB12 microsatellite sequence.-
709324660662 0.999- 0.000Ursus arctos voucher PL-IGAB-ZBM99 cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial.-
714511748748 1.000- 0.000Ursus thibetanus internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence.-
725012168175 0.980- 0.000Ursus arctos SINE element in Zfy gene, complete sequence.-
7335630134406 0.691- 0.000Ursus arctos cytochrome b (cytb) gene, partial cds; mitochondrial.
744811671671 1.000- 0.000Ursus arctos partial agt gene for putative alanine:glyoxylate aminotransferase, exons 1-2.-
759423244104 0.627- 0.000Ursus arctos syriacus mitochondrial partial D-loop, specimen voucher UAS10.-
769511817817 1.000- 0.000Ursus arctos 16S ribosomal RNA gene, partial sequence; mitochondrial gene for mitochondrial product.-
779611321321 1.000- 0.000Ursus arctos adenosine A3 receptor (ADORA3) gene, partial cds.-
789711827827 1.000- 0.000Ursus arctos beta-2 adrenergic receptor (ADRB2) gene, partial cds.-
799811636636 1.000- 0.000Ursus arctos amyloid beta precursor protein (APP) gene, partial cds.-
809911675675 1.000- 0.000Ursus arctos ATP7A (ATP7A) gene, partial cds.-
8110011308308 1.000- 0.000Ursus arctos BMI1 (BMI1) gene, 3' UTR.-
8210111413413 1.000- 0.000Ursus arctos cAMP responsive element moderator (CREM) gene, partial cds and 3' UTR.-
8310211317317 1.000- 0.000Ursus arctos phospholipase C beta 4 (PLCB4) gene, 3' UTR.-
8410311282282 1.000- 0.000Ursus arctos prepronociceptin (PNOC) gene, partial cds.-
8510411444444 1.000- 0.000Ursus arctos recombination activating protein 2 (RAG2) gene, partial cds.-
8610511426426 1.000- 0.000Ursus arctos tyrosinase (TYR) gene, partial cds.-
8710611204204 1.000- 0.000Ursus arctos zinc finger protein ZFX (ZFX) gene, partial cds.-
88107349631026 0.955- 0.000Ursus arctos 12S ribosomal RNA gene, partial sequence; and tRNA-Val gene, complete sequence; mitochondrial genes for mitochondrial products.-
89108196262 1.000- 0.000Ursus arctos specimen-voucher FAM95640 mitochondrial D-loop, partial sequence.-
901093752119 0.793- 0.000Ursus maritimus isolate PBX10616 SRY (SRY) gene, partial cds.-
911733967967 1.000- 0.000Ursus arctos G protein-coupled receptor 33 (GPR33) gene, partial sequence.-
9211034354362 0.990- 0.000Ursus arctos EPM2B gene repeat region, partial sequence.-
935211442442 1.000- 0.000Ursus arctos thyroxine-binding globulin (TBG) gene, partial cds.-
9411111786786 1.000- 0.000Ursus arctos mRNA for prostaglandin D synthase, complete cds.-
95112365641037 0.848- 0.000Ursus maritimus voucher UAM:Mamm:47075 16S ribosomal RNA gene, partial sequence; mitochondrial.-
963623346392 0.923- 0.000Ursus arctos mitochondrion 12S ribosomal RNA gene, partial sequence.-
9711322498520 0.979- 0.000U.maritimus mitochondrial D-loop tandem repeat.-
9811411395395 1.000- 0.000Ursus arctos microsatellite DNA, clone UarMU05.-
9911511582582 1.000- 0.000Ursus arctos microsatellite DNA, clone UarMU09.-
10011611422422 1.000- 0.000Ursus arctos microsatellite DNA, clone UarMU10.-
10111711402402 1.000- 0.000Ursus arctos microsatellite DNA, clone UarMU11.-
10211811498498 1.000- 0.000Ursus arctos microsatellite DNA, clone UarMU15.-
10311911301301 1.000- 0.000Ursus arctos microsatellite DNA, clone UarMU23.-
10412011587587 1.000- 0.000Ursus arctos microsatellite DNA, clone UarMU26.-
10512111349349 1.000- 0.000Ursus arctos microsatellite DNA, clone UarMU50.-
10612211218218 1.000- 0.000Ursus arctos microsatellite DNA, clone UarMU51.-
10712311387387 1.000- 0.000Ursus arctos microsatellite DNA, clone UarMU59.-
10812411286286 1.000- 0.000Ursus arctos microsatellite DNA, clone UarMU61.-
10912511402402 1.000- 0.000Ursus arctos microsatellite DNA, clone UarMU63.-
11012611372372 1.000- 0.000Ursus arctos microsatellite DNA, clone UarMU64.-
1115611179179 1.000- 0.000Ursus arctos isolate D44 CD44 gene, exon v3 and partial cds, alternatively spliced.-
11212714397409 0.993- 0.000Ursus arctos MHC-DQA gene, exon 2, intron 2, partial sequence, allele: Urar-DQA*03.-
11312811219219 1.000- 0.000Ursus arctos isolate CF_L001_Urs_arc intron.-
11412911555555 1.000- 0.000Ursus arctos isolate CF_L002_Urs_arc intron.-
11513011356356 1.000- 0.000Ursus arctos isolate CF_L003_Urs_arc intron.-
11613111462462 1.000- 0.000Ursus arctos isolate CF_L004_Urs_arc intron.-
11713211269269 1.000- 0.000Ursus arctos isolate CF_L005_Urs_arc intron.-
11813311383383 1.000- 0.000Ursus arctos isolate CF_L006_Urs_arc intron.-
11913411539539 1.000- 0.000Ursus arctos isolate CF_L007_Urs_arc intron.-
12013511341341 1.000- 0.000Ursus arctos isolate CF_L009_Urs_arc intron.-
12113611825825 1.000- 0.000Ursus arctos isolate CF_L010_Urs_arc intron.-
12213711487487 1.000- 0.000Ursus arctos isolate CF_L011_Urs_arc intron.-
12313811524524 1.000- 0.000Ursus arctos isolate CF_L012_Urs_arc intron.-
12413911601601 1.000- 0.000Ursus arctos isolate CF_L014_Urs_arc intron.-
12514011292292 1.000- 0.000Ursus arctos isolate CF_L015_Urs_arc intron.-
12614111267267 1.000- 0.000Ursus arctos isolate CF_L016_Urs_arc intron.-
12714211630630 1.000- 0.000Ursus arctos isolate CF_L017_Urs_arc intron.-
12814311593593 1.000- 0.000Ursus arctos isolate CF_L018_Urs_arc intron.-
12914411507507 1.000- 0.000Ursus arctos isolate CF_L019_Urs_arc intron.-
13014511469469 1.000- 0.000Ursus arctos isolate CF_L020_Urs_arc intron.-
13114611427427 1.000- 0.000Ursus arctos isolate CF_L021_Urs_arc intron.-
13214711353353 1.000- 0.000Ursus arctos isolate CF_L022_Urs_arc intron.-
13314811570570 1.000- 0.000Ursus arctos isolate CF_L023_Urs_arc intron.-
13414911413413 1.000- 0.000Ursus arctos isolate CF_L024_Urs_arc intron.-
13515011279279 1.000- 0.000Thalarctos maritimus growth factor receptor-bound protein 2 mRNA, partial cds.-
13615111344344 1.000- 0.000Thalarctos maritimus peptidyl-glycine alpha-amidating monooxygenase precursor, mRNA, partial cds.-
13715211647647 1.000- 0.000Ursus maritimus luteinizing hormone receptor mRNA, partial cds.-
13815311852852 1.000- 0.000Ursus maritimus follicle-stimulating hormone receptor mRNA, partial cds.-
13915411681681 1.000- 0.000Ursus maritimus prolactin receptor mRNA, partial cds.-
140155125237237 1.000- 0.000Ursus maritimus MHC class II DR alpha 1 domain (Urma-DRB) gene, Urma-DRB*12 allele, exon 2 and partial cds.-
141156247596 0.919- 0.000Ursus maritimus isolate PBX11021 SRY-like gene, partial sequence.-
14215711908908 1.000- 0.000Ursus maritimus Hox8 early enhancer sequence.-
14315811155155 1.000- 0.000Ursus maritimus abnormal spindle-like microcephaly-associated protein (ASPM) gene, exon 18 and partial cds.-
14415911967967 1.000- 0.000Ursus maritimus rhodopsin mRNA, partial cds.-
14516011991991 1.000- 0.000Ursus maritimus visual pigment mRNA, partial cds.-
14616111398398 1.000- 0.000Ursus maritimus visual pigment mRNA, partial cds.-
1472923354362 0.985- 0.000Ursus maritimus nicotinic cholinergic receptor alpha polypeptide 1 precursor (CHRNA1) gene, intron 8 and partial cds.-
1483023598610 0.987- 0.000Ursus maritimus growth hormone receptor (GHR) gene, partial cds.-
1493122270270 1.000- 0.000Ursus maritimus rhodopsin (RHO1) gene, partial cds.-
15016211146146 1.000- 0.000Ursus maritimus claudin-1 gene, partial cds.-
15116322105105 1.000- 0.000Ursus maritimus surfactant protein C (SP-C) gene, partial cds.-
15216411175175 1.000- 0.000U.maritimus mRNa for amyloid precursor protein (APP) (partial).-
1531651794444 1.000- 0.000Ursus spelaeus mitochondrial DNA for D-loop, specimen voucher GS4.-
154166155050 1.000- 0.000Ursus spelaeus isolate SC11600 mitochondrial D-loop, CR fragment 5 and partial sequence.-
15516733175175 1.000- 0.000Ursus arctos horribilis partial mRNA for apolipoprotein B (apoB gene), editing region.-
1561681112181218 1.000- 0.000Ursus arctos horribilis corticosteroid-binding globulin mRNA, complete cds.-
15716911418418 1.000- 0.000Ursus thibetanus mupinensis eukaryotic translation initiation factor 1 mRNA, complete cds.-
1581701118971897 1.000- 0.000Ursus thibetanus mupinensis eukaryotic translation initiation factor 1 gene, complete cds.-
1591711128632863 1.000- 0.000Ursus thibetanus japonicus mRNA for leptin, complete cds.-
16017211472472 1.000- 0.000Ursus thibetanus japonicus gene for 18S rRNA, partial sequence.-
1611731117691769 1.000- 0.000Ursus thibetanus japonicus CYP17 mRNA for cytochrome P450c17, complete cds.-
1621741118441844 1.000- 0.000Ursus thibetanus japonicus CYP11A mRNA for cytochrome P450 cholesterol side-chain cleavage enzyme, complete cds.-
1631751115261526 1.000- 0.000Ursus thibetanus japonicus cyp19 mRNA for cytochrome P450 aromatase, complete cds.-
16417611688688 1.000- 0.000Ursus arctos arctos adiponectin mRNA, partial cds.-

  1 Maximum Alignment Density
  2 "Q" alignment comparison score between default Clustal W and Muscle alignments
  3 Level of resolution (consensus fork index) of the strict consensus tree built from the two bootstrap trees from Clustal W and Muscle alignments.
  4 Trees are unrooted majority rule consensus trees from 'fast bootstrap parsimony' algorithm in PAUP* 4.0 using default ClustalW alignments. Expect performance to deteriorate with low MAD or Q scores, large number of taxa, and high sequence divergence (largely owing to alignment problems). Only trees for (taxon) phylogenetically informative clusters with fewer than 1000 sequences are generated.


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