Cluster set at subtree whose root is 'Ursus'

Click here to see taxon by cluster Data Availability Matrix
Cluster IDParent clusterTaxIDsGIsLminLmaxMAD1Q2Tcfi3Defline of longest sequenceTree4
924610811191 0.938- 0.000Ursus thibetanus vwf gene for von Willebrand factor, partial cds, specimen_voucher: personal:Tetsuji Hosoda:TH127.
10348397397 1.000- 0.000Ursus arctos partial zfx gene for X-linked zinc finger protein.
1144912661306 0.983- 0.000Ursus arctos sex determining region Y protein (SRY) gene, complete cds.
12545380681 0.647- 0.000Ursus arctos partial tRNA-Sec gene for transfer RNA-Sec.
13647381459 0.951- 0.000Ursus maritimus partial fes gene for feline sarcoma protooncogene, exons 13-14.
1474412781407 0.959- 0.000Ursus arctos partial ube1y gene, exon 18.
15844209235 0.972- 0.000Ursus maritimus partial dio1 gene for deiodinase iodothyronine type I, exons 1.
16944491511 0.980- 0.000Ursus arctos partial dio2 gene for deiodinase iodothyronine type II, exon 2.
171044827979 0.936- 0.000Ursus thibetanus partial tg gene for thyroglobulin, exon 9.
181144310310 1.000- 0.000Ursus thibetanus partial sis gene for sodium iodide symporter, exons 6-7.
191244763814 0.976- 0.000Ursus thibetanus partial tshb gene for thyroid stimulating hormone beta subunit, exons 1-2.
201344372438 0.925- 0.000Ursus thibetanus partial trh gene for thyrotropin releasing hormone, exon 2.
21154710341274 0.953- 0.000Ursus arctos interphotoreceptor retinoid binding protein (irbp) gene, partial cds.
22164410111025 0.993- 0.000Ursus maritimus transthyretin gene, intron 1.
27329451670117044 0.986- 0.000Ursus thibetanus formosanus mitochondrion, complete genome.
283344728922 0.883- 0.000Ursus maritimus melanocortin 4 receptor (MC4R) gene, partial cds.
2937151412871289 0.790- 0.000Ursus arctos haplotype E10 NADH dehydrogenase subunit 6 (ND6) gene, partial cds; tRNA-Glu gene, complete sequence; cytochrome b (COB) gene, complete cds; and tRNA-Thr gene, complete sequence; mitochondrial.
30344971156 0.789- 0.000Ursus arctos mitochondrion tRNA-Thr and tRNA-Pro genes.
410101112811316 0.240- 0.000Ursus thibetanus ussuricus isolate Jangkang21 D-loop, complete sequence; mitochondrial.-
42384417561778 0.995- 0.000Ursus thibetanus ALAS2 gene, intron 7, partial sequence.
4339449951002 0.997- 0.000Ursus maritimus PLP gene for proteolipid protein, intron 3, partial sequence.
444044520529 0.988- 0.000Ursus thibetanus SMCX gene, intron 4, complete sequence.
4541448731088 0.901- 0.000Ursus arctos SMCY gene, intron 4, complete sequence.
464244852857 0.998- 0.000Ursus arctos ZFX gene, final intron, complete sequence.
47434410491053 0.999- 0.000Ursus maritimus ZFY gene, final intron, complete sequence.
5344517148387 0.580- 0.000Ursus thibetanus japonicus amelogenin (AMELX) gene, exon 6 and partial cds.
7335630134406 0.691- 0.000Ursus arctos cytochrome b (cytb) gene, partial cds; mitochondrial.

  1 Maximum Alignment Density
  2 "Q" alignment comparison score between default Clustal W and Muscle alignments
  3 Level of resolution (consensus fork index) of the strict consensus tree built from the two bootstrap trees from Clustal W and Muscle alignments.
  4 Trees are unrooted majority rule consensus trees from 'fast bootstrap parsimony' algorithm in PAUP* 4.0 using default ClustalW alignments. Expect performance to deteriorate with low MAD or Q scores, large number of taxa, and high sequence divergence (largely owing to alignment problems). Only trees for (taxon) phylogenetically informative clusters with fewer than 1000 sequences are generated.


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