Cluster set at subtree whose root is 'Ursus thibetanus'

Click here to see taxon by cluster Data Availability Matrix
Cluster IDParent clusterTaxIDsGIsLminLmaxMAD1Q2Tcfi3Defline of longest sequenceTree4
0011370370 1.000- 0.000Ursus thibetanus DNA, microsatellite MSUT-1.-
1111420420 1.000- 0.000Ursus thibetanus DNA, microsatellite MSUT-2.-
2211392392 1.000- 0.000Ursus thibetanus DNA, microsatellite MSUT-3.-
3311260260 1.000- 0.000Ursus thibetanus DNA, microsatellite MSUT-4.-
4411479479 1.000- 0.000Ursus thibetanus DNA, microsatellite MSUT-5.-
5511653653 1.000- 0.000Ursus thibetanus DNA, microsatellite MSUT-6.-
6611577577 1.000- 0.000Ursus thibetanus DNA, microsatellite MSUT-7.-
7711309309 1.000- 0.000Ursus thibetanus DNA, microsatellite MSUT-8.-
8811303303 1.000- 0.000Ursus thibetanus DRD4 gene fordopamine receptor D4, partial cds.-
9412704971316 0.572- 0.000Ursus thibetanus ussuricus isolate Jangkang21 D-loop, complete sequence; mitochondrial.-
1091210811191 0.954- 0.000Ursus thibetanus vwf gene for von Willebrand factor, partial cds, specimen_voucher: personal:Tetsuji Hosoda:TH127.-
111012397397 1.000- 0.000Ursus thibetanus partial zfy gene for Y-linked zinc finger protein.-
12111212661302 0.986- 0.000Ursus thibetanus sry gene for sex determining Y protein, exon 1.-
131211380380 1.000- 0.000Ursus thibetanus partial tRNA-Sec gene for transfer RNA-Sec.-
141311459459 1.000- 0.000Ursus thibetanus partial fes gene for feline sarcoma protooncogene, exons 13-14.-
15141113561356 1.000- 0.000Ursus thibetanus partial ube1y gene, exon 18.-
161511209209 1.000- 0.000Ursus thibetanus partial dio1 gene for deiodinase iodothyronine type I, exon 1.-
171611491491 1.000- 0.000Ursus thibetanus partial dio2 gene for deiodinase iodothyronine type II, exon 2.-
181711979979 1.000- 0.000Ursus thibetanus partial tg gene for thyroglobulin, exon 9.-
191811310310 1.000- 0.000Ursus thibetanus partial sis gene for sodium iodide symporter, exons 6-7.-
201911801801 1.000- 0.000Ursus thibetanus partial tshb gene for thyroid stimulating hormone beta subunit, exons 1-2.-
212011438438 1.000- 0.000Ursus thibetanus partial trh gene for thyrotropin releasing hormone, exon 2.-
22211211781274 0.962- 0.000Ursus thibetanus interphotoreceptor retinoid binding protein (irbp) gene, partial cds.-
23221110111011 1.000- 0.000Ursus thibetanus transthyretin gene, intron 1.-
242311558558 1.000- 0.000Ursus thibetanus beta-fibrinogen gene, intron 4.-
252411602602 1.000- 0.000Ursus thibetanus beta-fibrinogen gene, intron 7.-
26251110441044 1.000- 0.000Ursus thibetanus NADH dehydrogenase 2 (ND2) gene, complete cds; mitochondrial.-
272611420420 1.000- 0.000Ursus thibetanus pancreatic ribonuclease (RNASE1) gene, partial cds.-
2827571670117044 0.990- 0.000Ursus thibetanus formosanus mitochondrion, complete genome.
292811728728 1.000- 0.000Ursus thibetanus melanocortin 4 receptor (MC4R) gene, partial cds.-
302941711401140 1.000- 0.000Ursus thibetanus mitochondrial cytb gene for cytochrome b, complete cds, haplotype: Cb-C1.
313011135135 1.000- 0.000Ursus thibetanus mitochondrion Thr-tRNA and Pro-tRNA genes, complete sequence.-
323111284284 1.000- 0.000Ursus thibetanus clone UT38 microsatellite sequence.-
333211403403 1.000- 0.000Ursus thibetanus clone UT31 microsatellite sequence.-
343311190190 1.000- 0.000Ursus thibetanus clone UT35 microsatellite sequence.-
353411448448 1.000- 0.000Ursus thibetanus clone UT36 microsatellite sequence.-
363511306306 1.000- 0.000Ursus thibetanus clone UT29 microsatellite sequence.-
373611481481 1.000- 0.000Ursus thibetanus clone UT25 microsatellite sequence.-
383711386386 1.000- 0.000Ursus thibetanus clone UT23 microsatellite sequence.-
393811470470 1.000- 0.000Ursus thibetanus clone UT4 microsatellite sequence.-
403911359359 1.000- 0.000Ursus thibetanus clone UT3 microsatellite sequence.-
414011252252 1.000- 0.000Ursus thibetanus clone UT1 microsatellite sequence.-
4241242238242 0.990- 0.000Ursus thibetanus japonicus mitochondrial DNA, control region, haplotype: J10e.-
43421117731773 1.000- 0.000Ursus thibetanus ALAS2 gene, intron 7, partial sequence.-
444311995995 1.000- 0.000Ursus thibetanus PLP gene for proteolipid protein, intron 3, partial sequence.-
454411529529 1.000- 0.000Ursus thibetanus SMCX gene, intron 4, complete sequence.-
464511873873 1.000- 0.000Ursus thibetanus SMCY gene, intron 4, complete sequence.-
474611852852 1.000- 0.000Ursus thibetanus ZFX gene, final intron, complete sequence.-
48471110521052 1.000- 0.000Ursus thibetanus ZFY gene, final intron, complete sequence.-
494811963963 1.000- 0.000Ursus thibetanus APOB gene for apolipoprotein B, partial cds, specimen_voucher: personal:Tetsuji Hosoda:TH127.-
50491110401040 1.000- 0.000Ursus thibetanus brca1 gene for breast and ovarian cancer susceptibility protein 1, partial cds, specimen_voucher: personal:Tetsuji Hosoda:TH127.-
51501110951095 1.000- 0.000Ursus thibetanus rag1 gene for recombination activating gene 1, partial cds, specimen_voucher: personal:Tetsuji Hosoda:TH127.-
52511110861086 1.000- 0.000Ursus thibetanus hsd17b3 mRNA for 17beta-hydroxysteroid dehydrogenase type 3, complete cds.-
53521116761676 1.000- 0.000Ursus thibetanus hsd3b mRNA for 3beta hydroxysteroid dehydrogenase, complete cds.-
545323148387 0.635- 0.000Ursus thibetanus japonicus amelogenin (AMELX) gene, exon 6 and partial cds.-
555411339339 1.000- 0.000Ursus thibetanus brain derived neurotrophic factor (BDNF) gene, partial cds.-
5655118181 1.000- 0.000Ursus thibetanus MHC class II antigen (HLA-DMB) gene, exon 3 and partial cds.-
575611111111 1.000- 0.000Ursus thibetanus luteinizing hormone beta subunit precursor, gene, exon 2 and partial cds.-
585711633633 1.000- 0.000Ursus thibetanus follicle-stimulating hormone receptor gene, exon 10 and partial cds.-
595811240240 1.000- 0.000Ursus thibetanus zinc finger X-linked protein 1 gene, exon 7 and partial cds.-
605911573573 1.000- 0.000Ursus thibetanus clone ABB1 microsatellite sequence.-
616011398398 1.000- 0.000Ursus thibetanus clone ABB2 microsatellite sequence.-
626111692692 1.000- 0.000Ursus thibetanus clone ABB3 microsatellite sequence.-
636211353353 1.000- 0.000Ursus thibetanus clone ABB4 microsatellite sequence.-
646311658658 1.000- 0.000Ursus thibetanus clone ABB5 microsatellite sequence.-
656411400400 1.000- 0.000Ursus thibetanus clone ABB6 microsatellite sequence.-
666512487487 1.000- 0.000Ursus thibetanus clone ABB7 microsatellite sequence.-
676611379379 1.000- 0.000Ursus thibetanus clone ABB9 microsatellite sequence.-
686711287287 1.000- 0.000Ursus thibetanus clone ABB10 microsatellite sequence.-
696811368368 1.000- 0.000Ursus thibetanus clone ABB11 microsatellite sequence.-
706911343343 1.000- 0.000Ursus thibetanus clone ABB12 microsatellite sequence.-
717011660660 1.000- 0.000Ursus thibetanus voucher PL-IGAB-ZBM90 cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial.-
727111748748 1.000- 0.000Ursus thibetanus internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence.-
7315711418418 1.000- 0.000Ursus thibetanus mupinensis eukaryotic translation initiation factor 1 mRNA, complete cds.-
741581118971897 1.000- 0.000Ursus thibetanus mupinensis eukaryotic translation initiation factor 1 gene, complete cds.-
751591128632863 1.000- 0.000Ursus thibetanus japonicus mRNA for leptin, complete cds.-
768811965965 1.000- 0.000Ursus thibetanus japonicus mitochondrial gene for 12S rRNA, complete sequence.-
7716011472472 1.000- 0.000Ursus thibetanus japonicus gene for 18S rRNA, partial sequence.-
781611117691769 1.000- 0.000Ursus thibetanus japonicus CYP17 mRNA for cytochrome P450c17, complete cds.-
791621118441844 1.000- 0.000Ursus thibetanus japonicus CYP11A mRNA for cytochrome P450 cholesterol side-chain cleavage enzyme, complete cds.-
801631115261526 1.000- 0.000Ursus thibetanus japonicus cyp19 mRNA for cytochrome P450 aromatase, complete cds.-

  1 Maximum Alignment Density
  2 "Q" alignment comparison score between default Clustal W and Muscle alignments
  3 Level of resolution (consensus fork index) of the strict consensus tree built from the two bootstrap trees from Clustal W and Muscle alignments.
  4 Trees are unrooted majority rule consensus trees from 'fast bootstrap parsimony' algorithm in PAUP* 4.0 using default ClustalW alignments. Expect performance to deteriorate with low MAD or Q scores, large number of taxa, and high sequence divergence (largely owing to alignment problems). Only trees for (taxon) phylogenetically informative clusters with fewer than 1000 sequences are generated.


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