Cluster set at subtree whose root is 'Ursus arctos'

Click here to see taxon by cluster Data Availability Matrix
Cluster IDParent clusterTaxIDsGIsLminLmaxMAD1Q2Tcfi3Defline of longest sequenceTree4
041278788702 0.443- 0.000Ursus arctos mitochondrial DNA, tRNA-proline and D-loop region, partial sequence, isolate: HB-17-5051.-
1291667041289 0.916- 0.000Ursus arctos haplotype E14 NADH dehydrogenase subunit 6 (ND6) gene, partial cds; tRNA-Glu gene, complete sequence; cytochrome b (COB) gene, complete cds; and tRNA-Thr gene, complete sequence; mitochondrial.-
2211310341274 0.915- 0.000Ursus arctos interphotoreceptor retinoid binding protein (irbp) gene, partial cds.-
350127741095 0.853- 0.000Ursus arctos RAG1 gene, partial cds, isolate: HS1420.-
44811963963 1.000- 0.000Ursus arctos APOB gene for apolipoprotein B, partial cds, isolate: HS1420.-
55412558744 0.875- 0.000Ursus arctos brain-derived neurotrophic factor (BDNF) gene, complete cds.-
6221110201020 1.000- 0.000Ursus arctos transthyretin intron 1, partial sequence.-
77212168175 0.980- 0.000Ursus arctos SINE element in Zfy gene, complete sequence.-
873224134406 0.658- 0.000Ursus arctos cytochrome b (cytb) gene, partial cds; mitochondrial.-
92914287287 1.000- 0.000Ursus arctos isolate K19 cytochrome b gene, partial cds; mitochondrial gene for mitochondrial product.-
1027121675317020 0.992- 0.000Ursus arctos mitochondrion, complete genome.-
117411671671 1.000- 0.000Ursus arctos partial agt gene for putative alanine:glyoxylate aminotransferase, exons 1-2.-
127523244104 0.627- 0.000Ursus arctos syriacus mitochondrial partial D-loop, specimen voucher UAS10.-
1391210811191 0.954- 0.000Ursus arctos vwf gene for von Willebrand factor, partial cds, specimen_voucher: personal:Hitoshi Suzuki:HS1420.-
141012397397 1.000- 0.000Ursus arctos partial zfy gene for Y-linked zinc finger protein.-
15111312661306 0.989- 0.000Ursus arctos sex determining region Y protein (SRY) gene, complete cds.-
161211381381 1.000- 0.000Ursus arctos partial tRNA-Sec gene for transfer RNA-Sec.-
171311459459 1.000- 0.000Ursus arctos partial fes gene for feline sarcoma protooncogene, exons 13-14.-
18141113571357 1.000- 0.000Ursus arctos partial ube1y gene, exon 18.-
191511235235 1.000- 0.000Ursus arctos partial dio1 gene for deiodinase iodothyronine type I, exon 1.-
201611511511 1.000- 0.000Ursus arctos partial dio2 gene for deiodinase iodothyronine type II, exon 2.-
211711931931 1.000- 0.000Ursus arctos partial tg gene for thyroglobulin, exon 9.-
221811310310 1.000- 0.000Ursus arctos partial sis gene for sodium iodide symporter, exons 6-7.-
231911800800 1.000- 0.000Ursus arctos partial tshb gene for thyroid stimulating hormone beta subunit, exons 1-2.-
242011372372 1.000- 0.000Ursus arctos partial trh gene for thyrotropin releasing hormone, exon 2.-
257611817817 1.000- 0.000Ursus arctos 16S ribosomal RNA gene, partial sequence; mitochondrial gene for mitochondrial product.-
267711321321 1.000- 0.000Ursus arctos adenosine A3 receptor (ADORA3) gene, partial cds.-
277811827827 1.000- 0.000Ursus arctos beta-2 adrenergic receptor (ADRB2) gene, partial cds.-
287911636636 1.000- 0.000Ursus arctos amyloid beta precursor protein (APP) gene, partial cds.-
298011675675 1.000- 0.000Ursus arctos ATP7A (ATP7A) gene, partial cds.-
308111308308 1.000- 0.000Ursus arctos BMI1 (BMI1) gene, 3' UTR.-
318211413413 1.000- 0.000Ursus arctos cAMP responsive element moderator (CREM) gene, partial cds and 3' UTR.-
328311317317 1.000- 0.000Ursus arctos phospholipase C beta 4 (PLCB4) gene, 3' UTR.-
338411282282 1.000- 0.000Ursus arctos prepronociceptin (PNOC) gene, partial cds.-
348511444444 1.000- 0.000Ursus arctos recombination activating protein 2 (RAG2) gene, partial cds.-
358611426426 1.000- 0.000Ursus arctos tyrosinase (TYR) gene, partial cds.-
368711204204 1.000- 0.000Ursus arctos zinc finger protein ZFX (ZFX) gene, partial cds.-
3788129631026 0.969- 0.000Ursus arctos 12S ribosomal RNA gene, partial sequence; and tRNA-Val gene, complete sequence; mitochondrial genes for mitochondrial products.-
3889196262 1.000- 0.000Ursus arctos specimen-voucher FAM95640 mitochondrial D-loop, partial sequence.-
395316148243 0.870- 0.000Ursus arctos isolate GCX tooth enamel protein (AMELX) gene, exon 5 and partial cds.-
40901290119 0.878- 0.000Ursus arctos isolate G40 SRY (SRY) gene, partial cds.-
419111967967 1.000- 0.000Ursus arctos G protein-coupled receptor 33 (GPR33) gene, partial sequence.-
429212354362 0.989- 0.000Ursus arctos EPM2B gene repeat region, partial sequence.-
43251110441044 1.000- 0.000Ursus arctos NADH dehydrogenase subunit 2 (ND2) gene, complete cds; mitochondrial.-
449311442442 1.000- 0.000Ursus arctos thyroxine-binding globulin (TBG) gene, partial cds.-
452311558558 1.000- 0.000Ursus arctos beta-fibrinogen gene, intron 4.-
469411786786 1.000- 0.000Ursus arctos mRNA for prostaglandin D synthase, complete cds.-
4795125641037 0.772- 0.000Ursus arctos voucher UAM:Mamm:30610 16S ribosomal RNA gene, partial sequence; mitochondrial.-
482811839839 1.000- 0.000Ursus arctos melanocortin 4 receptor (MC4R) gene, partial cds.-
49301571156 0.810- 0.000Ursus arctos mitochondrion tRNA-Thr and tRNA-Pro genes.-
509612347392 0.943- 0.000Ursus arctos mitochondrion 12S ribosomal RNA gene, partial sequence.-
5190115252 1.000- 0.000Ursus arctos SRY box DNA sequence.-
529711498498 1.000- 0.000U.arctos mitochondrial D-loop tandem repeat.-
539811395395 1.000- 0.000Ursus arctos microsatellite DNA, clone UarMU05.-
549911582582 1.000- 0.000Ursus arctos microsatellite DNA, clone UarMU09.-
5510011422422 1.000- 0.000Ursus arctos microsatellite DNA, clone UarMU10.-
5610111402402 1.000- 0.000Ursus arctos microsatellite DNA, clone UarMU11.-
5710211498498 1.000- 0.000Ursus arctos microsatellite DNA, clone UarMU15.-
5810311301301 1.000- 0.000Ursus arctos microsatellite DNA, clone UarMU23.-
5910411587587 1.000- 0.000Ursus arctos microsatellite DNA, clone UarMU26.-
6010511349349 1.000- 0.000Ursus arctos microsatellite DNA, clone UarMU50.-
6110611218218 1.000- 0.000Ursus arctos microsatellite DNA, clone UarMU51.-
6210711387387 1.000- 0.000Ursus arctos microsatellite DNA, clone UarMU59.-
6310811286286 1.000- 0.000Ursus arctos microsatellite DNA, clone UarMU61.-
6410911402402 1.000- 0.000Ursus arctos microsatellite DNA, clone UarMU63.-
6511011372372 1.000- 0.000Ursus arctos microsatellite DNA, clone UarMU64.-
6611111179179 1.000- 0.000Ursus arctos isolate D44 CD44 gene, exon v3 and partial cds, alternatively spliced.-
67421117561756 1.000- 0.000Ursus arctos ALAS2 gene, intron 7, partial sequence.-
684311998998 1.000- 0.000Ursus arctos PLP gene for proteolipid protein, intron 3, partial sequence.-
694411521521 1.000- 0.000Ursus arctos SMCX gene, intron 4, complete sequence.-
70451110881088 1.000- 0.000Ursus arctos SMCY gene, intron 4, complete sequence.-
714611856856 1.000- 0.000Ursus arctos ZFX gene, final intron, complete sequence.-
72471110531053 1.000- 0.000Ursus arctos ZFY gene, final intron, complete sequence.-
73491110401040 1.000- 0.000Ursus arctos brca1 gene for breast and ovarian cancer susceptibility protein 1, partial cds, specimen_voucher: personal:Hitoshi Suzuki:HS1420.-
7411214397409 0.993- 0.000Ursus arctos MHC-DQA gene, exon 2, intron 2, partial sequence, allele: Urar-DQA*03.-
7511311219219 1.000- 0.000Ursus arctos isolate CF_L001_Urs_arc intron.-
7611411555555 1.000- 0.000Ursus arctos isolate CF_L002_Urs_arc intron.-
7711511356356 1.000- 0.000Ursus arctos isolate CF_L003_Urs_arc intron.-
7811611462462 1.000- 0.000Ursus arctos isolate CF_L004_Urs_arc intron.-
7911711269269 1.000- 0.000Ursus arctos isolate CF_L005_Urs_arc intron.-
8011811383383 1.000- 0.000Ursus arctos isolate CF_L006_Urs_arc intron.-
8111911539539 1.000- 0.000Ursus arctos isolate CF_L007_Urs_arc intron.-
8212011341341 1.000- 0.000Ursus arctos isolate CF_L009_Urs_arc intron.-
8312111825825 1.000- 0.000Ursus arctos isolate CF_L010_Urs_arc intron.-
8412211487487 1.000- 0.000Ursus arctos isolate CF_L011_Urs_arc intron.-
8512311524524 1.000- 0.000Ursus arctos isolate CF_L012_Urs_arc intron.-
8612411601601 1.000- 0.000Ursus arctos isolate CF_L014_Urs_arc intron.-
8712511292292 1.000- 0.000Ursus arctos isolate CF_L015_Urs_arc intron.-
8812611267267 1.000- 0.000Ursus arctos isolate CF_L016_Urs_arc intron.-
8912711630630 1.000- 0.000Ursus arctos isolate CF_L017_Urs_arc intron.-
9012811593593 1.000- 0.000Ursus arctos isolate CF_L018_Urs_arc intron.-
9112911507507 1.000- 0.000Ursus arctos isolate CF_L019_Urs_arc intron.-
9213011469469 1.000- 0.000Ursus arctos isolate CF_L020_Urs_arc intron.-
9313111427427 1.000- 0.000Ursus arctos isolate CF_L021_Urs_arc intron.-
9413211353353 1.000- 0.000Ursus arctos isolate CF_L022_Urs_arc intron.-
9513311570570 1.000- 0.000Ursus arctos isolate CF_L023_Urs_arc intron.-
9613411413413 1.000- 0.000Ursus arctos isolate CF_L024_Urs_arc intron.-
977013662662 1.000- 0.000Ursus arctos voucher PL-IGAB-ZBM99 cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial.-
9815522175175 1.000- 0.000Ursus arctos horribilis partial mRNA for apolipoprotein B (apoB gene), editing region.-
991561112181218 1.000- 0.000Ursus arctos horribilis corticosteroid-binding globulin mRNA, complete cds.-
10016411688688 1.000- 0.000Ursus arctos arctos adiponectin mRNA, partial cds.-

  1 Maximum Alignment Density
  2 "Q" alignment comparison score between default Clustal W and Muscle alignments
  3 Level of resolution (consensus fork index) of the strict consensus tree built from the two bootstrap trees from Clustal W and Muscle alignments.
  4 Trees are unrooted majority rule consensus trees from 'fast bootstrap parsimony' algorithm in PAUP* 4.0 using default ClustalW alignments. Expect performance to deteriorate with low MAD or Q scores, large number of taxa, and high sequence divergence (largely owing to alignment problems). Only trees for (taxon) phylogenetically informative clusters with fewer than 1000 sequences are generated.


Back to taxonomic hierarchy view