Cluster set at subtree whose root is 'Felidae'

Click here to see taxon by cluster Data Availability Matrix
Cluster IDParent clusterTaxIDsGIsLminLmaxMAD1Q2Tcfi3Defline of longest sequenceTree4
0814192270614 0.620- 0.000Panthera pardus 16S ribosomal RNA gene, partial sequence; mitochondrial.
19541225220611 0.765- 0.000Panthera pardus isolate SHO12 NADH dehydrogenase subunit 5 (NADH5) gene, partial cds; mitochondrial gene for mitochondrial product.
243651496885 0.971- 0.000Panthera tigris TTR gene, partial sequence.
396312555558 0.999- 0.000Felis chaus isolate FCCh05-5 BaEV endogenous retrovirus pol and env genes, partial sequence.-
49766185188 0.996- 0.000Felis margarita SINE element in Zfy gene, complete sequence.
553265211551181 0.997- 0.000Neofelis nebulosa strain nnex zinc finger protein Zfx (Zfx) gene, partial cds.
69811588588 1.000- 0.000Felis silvestris CRX protein mRNA, partial cds.-
7992717364355 0.553- 0.000Felis libyca mitochondrial COII gene (partial), atpase8 gene, atpase6 gene (partial) and tRNA-Lys gene, isolate 7.
81521411190810 0.553- 0.000Prionailurus bengalensis mitochondrial DNA, D-loop region, haplotype: FDS2.
9021288321274 0.921- 0.000Panthera pardus interphotoreceptor retinoid-binding protein (irbp) gene, partial cds.
103394061001760 0.389- 0.000Panthera leo isolate P88017 from Morocco cytochrome b gene, complete cds; tRNA-Thr and tRNA-Pro genes, complete sequence; and control region, partial sequence; mitochondrial.
11100313185301 0.970- 0.000Felis silvestris haplotype H3 mitochondrion control region, partial sequence.-
1210136367912567 0.372- 0.000Felis libyca Smcy gene, intron 4, complete sequence.
1310235359401197 0.806- 0.000Otocolobus manul Ube1y gene, exon 18 and partial cds.
141033839713969 0.795- 0.000Felis silvestris Zfy gene, intron.
154455429435 0.994- 0.000Leopardus pardalis thyroxine-binding globulin (TBG) gene, partial sequence.
16263740638643 0.996- 0.000Panthera onca amyloid beta precursor protein (APP) gene, partial cds.
17223946235332 0.974- 0.000Panthera leo cholinergic receptor nicotinic alpha polypeptide 1 precursor (CHRNA1) gene, partial cds.
1828383813591373 0.997- 0.000Otocolobus manul CLU gene, partial sequence.
19503737515518 1.000- 0.000Uncia uncia CMA1 (CMA1) gene, partial cds.
20293737702715 0.987- 0.000Catopuma badia DGKG2 gene, partial sequence.
21303636243413 0.984- 0.000Felis bieti FES gene, partial sequence.
22313737440457 0.966- 0.000Panthera tigris GATA3 gene, partial sequence.
23323737665670 1.000- 0.000Leopardus tigrinus GHR (GHR) gene, partial cds.
24333838622622 1.000- 0.000Otocolobus manul GNAZ (GNAZ) gene, partial cds.
251043838206357 0.966- 0.000Lynx canadensis HK1 gene, partial sequence.
26353838294296 0.999- 0.000Oncifelis guigna NCL (NCL) gene, partial cds.
27363838290290 1.000- 0.000Leopardus tigrinus PNOC (PNOC) gene, partial cds.
28373842423777 0.614- 0.000Lynx lynx RAG2 (RAG2) gene, partial cds.
29383838548552 0.998- 0.000Felis nigripes RSA2 gene, partial sequence.
30393838371372 0.998- 0.000Otocolobus manul SIL gene, partial sequence.
31403737585601 0.985- 0.000Prionailurus bengalensis TCP1 (TCP1) gene, partial cds.
32513838319513 0.988- 0.000Felis libyca ALAS gene, partial sequence.
33413838670670 1.000- 0.000Leptailurus serval ATP-7A (ATP7A) gene, partial cds.
34423838318319 0.997- 0.000Oreailurus jacobita IL2RG (IL2RG) gene, partial cds.
35433636766900 0.991- 0.000Pardofelis marmorata PLP gene, partial sequence.
361053841823847 0.995- 0.000Felis chaus isolate Fch ZFX gene, intron.
37106363718952792 0.969- 0.000Acinonyx jubatus sex-determining region Y protein (SRY) gene, complete cds.
381077195611882 0.795- 0.000Panthera leo haplotype H1 12S ribosomal RNA gene, partial sequence; tRNA-Val gene, complete sequence; and 16S ribosomal RNA gene, partial sequence; mitochondrial.
4054596091140 0.587- 0.000Felis silvestris isolate N51 cytochrome b (cytb) gene, complete cds; mitochondrial.
4110811720720 1.000- 0.000Cat c-myc gene, complete cds.-
4210911901901 1.000- 0.000Cat c-myc gene, complete cds.-
431101112601260 1.000- 0.000Cat c-myc gene, complete cds.-
4411111633633 1.000- 0.000Felis silvestris aminopeptidase N gene, partial cds.-
451122211251752 0.821- 0.000Cat c-sis oncogene (platelet-derived growth factor) 5' region.-
461131134253425 1.000- 0.000Feline mRNA for c-sis proto-oncogene for PDGF beta PDGF = platelet-derived growth factor.-
4711411457457 1.000- 0.000Feline mRNA for preprogastrin.-
481151157325732 1.000- 0.000Cat ECE1 endogenous retroviral element DNA, partial.-
491161111188287 0.928- 0.000Panthera tigris amoyensis microsatellite PTA sequence.
5011718303235238 0.999- 0.000Leopardus wiedii MHC class II DR antigen beta subunit (Lewi-DRB) gene, Lewi-DRB*0221 allele, exon 2 and partial cds.
5111822724752 0.981- 0.000Felis catus mRNA for interleukin 6, complete cds.-
521191135343534 1.000- 0.000Cat MHC class I protein (FLA-A-psi) pseudogene, 3' end.-
5312011879879 1.000- 0.000Lynx lynx H19 RNA gene, partial sequence.-
548222763421025 0.481- 0.000Panthera onca 12S ribosomal RNA gene, partial sequence; and tRNA-Val gene, complete sequence; mitochondrial genes for mitochondrial products.
5551111654893 0.781- 0.000Otocolobus manul beta fibrinogen gene, intron 7.
566131513681378 0.994- 0.000Lynx canadensis NADH dehydrogenase subunit 4 (ND4) gene, complete cds; mitochondrial.
571211014567567 1.000- 0.000Uncia uncia isolate 7 follicle stimulating hormone receptor (FSHR) mRNA, partial cds.
58273434813821 0.995- 0.000Profelis aurata CALB gene, partial sequence.
59343434573674 0.977- 0.000Felis bieti GNB1 gene, partial sequence.
601222229552957 1.000- 0.000Lynx lynx steroid 21-hydroxylase gene, complete cds.-
61123614549870 0.687- 0.000Lynx lynx isolate 2 apolipoprotein B editing enzyme catalytic polypeptide-like 3C mRNA, complete cds, alternatively spliced.
62124675821119 0.617- 0.000Panthera leo bleyenberghi apolipoprotein B editing enzyme catalytic polypeptide-like 3H mRNA, complete cds.
6312511236631545 0.609- 0.000Prionailurus viverrinus isolate FCCOI cytochrome c oxidase subunit I (COX1) gene, complete cds; mitochondrial.
6412611843843 1.000- 0.000Lynx lynx tyrosine aminotransferase gene, intron.-
6512711684684 1.000- 0.000Lynx lynx tyrosine aminotransferase gene, partial cds.-
6612811443443 1.000- 0.000Lynx lynx serine protease inhibitor Kazal-type 5 (SPINK5) gene, partial cds.-
6712911845845 1.000- 0.000Lynx lynx SH2 domain protein C1 gene, partial cds.-
6813011387387 1.000- 0.000Lynx lynx phosphodiesterase 6B gene, partial cds.-
6913111840840 1.000- 0.000Lynx lynx nucleoporin Nup107 gene, partial cds.-
7013211794794 1.000- 0.000Lynx lynx natural resistance associated macrophage protein (NRAMP1) gene, partial cds.-
712479446652 0.933- 0.000Lynx canadensis growth hormone receptor (GHR) gene, partial cds.
7213311483483 1.000- 0.000Lynx lynx desmin gene, partial cds.-
7313411788788 1.000- 0.000Lynx lynx angio-associated migratory cell protein (AAMP) gene, partial sequence.-
744599178179 0.999- 0.000Acinonyx jubatus isolate D26 CD44 gene, exon v3 and partial cds, alternatively spliced.
751355613141616 0.844- 0.000Panthera tigris corbetti apolipoprotein B mRNA editing enzyme catalytic polypeptide 3 mRNA, complete cds.
761361132013201 1.000- 0.000Acinonyx jubatus Saa1 gene for serum amyloid A 1, complete cds.-
77137691255917047 0.939- 0.000Acinonyx jubatus mitochondrion, complete genome.
7813879887927 0.975- 0.000Felis margarita Hox8 early enhancer sequence.
79139977185527 0.857- 0.000Panthera onca isolate Pon30 mitochondrial control region, partial sequence.
808911261261 1.000- 0.000Acinonyx jubatus isolate AJ 1976 NADH dehydrogenase subunit 5 gene, partial cds; mitochondrial.-
8114011310310 1.000- 0.000Acinonyx jubatus isolate AJ S1571 NADH dehydrogenase subunit 4L and NADH dehydrogenase subunit 4 genes, partial cds; mitochondrial.-
8214179712987 0.954- 0.000Uncia uncia G protein-coupled receptor 33 (GPR33) gene, GPR33-A allele, partial sequence.
8314277327361 0.972- 0.000Acinonyx jubatus EPM2B gene repeat region, partial sequence.
84143229195 0.979- 0.000Panthera leo 16S ribosomal RNA gene, partial sequence; mitochondrial.-
8514433338564 0.733- 0.000Acinonyx jubatus amelogenin (AMELX) gene, exon 6 and partial cds.-
8614532210381490 0.836- 0.000Acinonyx jubatus jubatus clone AJUI3 major histocompatibility complex class I antigen (FLA-I) mRNA, partial cds.-
87146813339950 0.816- 0.000Lynx rufus prion protein (PRNP) gene, complete cds.
8814738316567 0.908- 0.000Panthera leo isolate lion 1 interferon-gamma (IFNG) mRNA, complete cds.-
8919137721112 0.916- 0.000Panthera tigris RAG1 gene, partial cds, isolate: HS1201.
90289938963 0.996- 0.000Prionailurus iriomotensis APOB gene for apolipoprotein B, partial cds, specimen_voucher: personal:Hitoshi Suzuki:HS599.
91148920875221 0.838- 0.000Leopardus tigrinus isolate bLti10 control region, partial sequence; mitochondrial.
921499145187266 0.960- 0.000Panthera leo persica clone M622 MHC class I antigen gene, exon 2 and partial cds.
931509109218246 0.980- 0.000Panthera leo persica clone FS922 MHC class I antigen gene, exon 3 and partial cds.
9415133808817 0.995- 0.000Leopardus pardalis 16S ribosomal RNA gene, partial sequence; mitochondrial gene for mitochondrial product.-
9515233321321 1.000- 0.000Leopardus pardalis adenosine A3 receptor (ADORA3) gene, partial cds.-
96153348261536 0.654- 0.000Panthera onca beta-2 adrenergic receptor (ADRB2) gene, partial cds.-
9715433675675 1.000- 0.000Leopardus pardalis ATP7A (ATP7A) gene, partial cds.-
9815534558744 0.812- 0.000Leopardus pardalis brain-derived neurotrophic factor (BDNF) gene, partial cds.-
9915633311311 1.000- 0.000Panthera onca BMI1 (BMI1) gene, 3' UTR.-
100157349901419 0.773- 0.000Leopardus pardalis cannabinoid receptor 1 (CNR1) gene, partial cds.-
10115833404405 0.999- 0.000Leopardus pardalis cAMP responsive element moderator (CREM) gene, partial cds and 3' UTR.-
10215933975975 1.000- 0.000Leopardus pardalis EDG1 (EDG1) gene, partial cds.-
10316033316317 0.999- 0.000Leopardus pardalis phospholipase C beta 4 (PLCB4) gene, 3' UTR.-
10416133285285 1.000- 0.000Leopardus pardalis prepronociceptin (PNOC) gene, partial cds.-
10516236426692 0.795- 0.000Leopardus pardalis tyrosinase (TYR) gene, partial cds.-
10616333204204 1.000- 0.000Leopardus pardalis zinc finger protein ZFX (ZFX) gene, partial cds.-
107164136363 1.000- 0.000Leopardus pardalis clone BAB cytochrome b gene, partial cds; mitochondrial.-
108177710431043 1.000- 0.000Panthera pardus brca1 gene for breast and ovarian cancer susceptibility protein 1, partial cds, specimen_voucher: personal:Hitoshi Suzuki:HS1203.
109188911911209 0.987- 0.000Prionailurus bengalensis vwf gene for von Willebrand factor, partial cds, specimen_voucher: personal:Hitoshi Suzuki:HS1021.
11016535317318 0.997- 0.000Prionailurus bengalensis DBY gene for Y-linked DBY, partial cds, specimen_voucher: Palam/Yuuki(Inokashira Zoo stock).-
11116611318318 1.000- 0.000Prionailurus bengalensis iduronate 2-sulfatase gene, partial cds.-
11216722728743 0.990- 0.000Prionailurus viverrinus internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence.-
11316848106133 0.886- 0.000Felis chaus isolate WII/WFC/R-299 cytochrome b gene, partial cds; mitochondrial.
11416911739739 1.000- 0.000Felis chaus internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence.-
115170229041720 0.763- 0.000Leopardus wiedii UDP-glucuronosyltransferase (UGT1A6) pseudogene, partial sequence.-
11617111127127 1.000- 0.000Lynx canadensis microsatellite Lc106 sequence.-
11717211754754 1.000- 0.000Lynx canadensis microsatellite Lc109 sequence.-
11817311106106 1.000- 0.000Lynx canadensis microsatellite Lc110 sequence.-
11917411165165 1.000- 0.000Lynx canadensis microsatellite Lc111 sequence.-
12017511251251 1.000- 0.000Lynx canadensis microsatellite Lc118 sequence.-
12117611249249 1.000- 0.000Lynx canadensis microsatellite Lc120 sequence.-
12217723199312 0.758- 0.000Lynx canadensis isolate LY12 tooth enamel protein (AMEL) gene, exon 5 and partial cds.-
12317822681681 1.000- 0.000Lynx canadensis ATP synthase F0 subunit 6 (ATP6) gene, complete cds; mitochondrial.-
12417955684684 1.000- 0.000Catopuma temminckii isolate AGCCOII cytochrome c oxidase subunit II (COX2) gene, complete cds; mitochondrial.
12618133782957 0.939- 0.000Lynx canadensis NADH dehydrogenase subunit 1 (ND1) gene, complete cds; mitochondrial.-
127182510347459 0.949- 0.000Panthera tigris altaica isolate Pta01 NADH dehydrogenase subunit 3 (ND3) gene, partial cds; tRNA-Arg gene, complete sequence; and NADH dehydrogenase subunit 4L (ND4L) gene, partial cds; mitochondrial.
12818322297297 1.000- 0.000Lynx canadensis NADH dehydrogenase subunit 4L (ND4L) gene, complete cds; mitochondrial.-
1292322320320 1.000- 0.000Lynx canadensis collagen type X alpha 1 (COL10A1) gene, partial cds.-
1308722434434 1.000- 0.000Lynx canadensis transducin alpha 1 (GNAT1) gene, partial cds.-
1312522683683 1.000- 0.000Lynx canadensis Wilms tumor 1 (WT1) gene, partial cds.-
13218411381381 1.000- 0.000Lynx canadensis feline sarcoma protooncogene (FES) gene, partial cds.-
13318566272272 1.000- 0.000Panthera tigris altaica rhodopsin (RHO1) gene, partial cds.
13418611702702 1.000- 0.000Lynx rufus clone bcd1t microsatellite sequence.-
13518711489489 1.000- 0.000Lynx rufus clone bce5t microsatellite sequence.-
13618811413413 1.000- 0.000Lynx rufus clone bcg3d microsatellite sequence.-
13718911495495 1.000- 0.000Lynx rufus clone bcd8t microsatellite sequences.-
13819011425425 1.000- 0.000Lynx rufus clone bcg8t microsatellite sequence.-
13919111796796 1.000- 0.000Lynx rufus clone bch6t microsatellite sequence.-
14019211659659 1.000- 0.000Lynx rufus clone bcb12d microsatellite sequence.-
14119311629629 1.000- 0.000Lynx rufus clone bc1at microsatellite sequence.-
14219411484484 1.000- 0.000Lynx rufus clone bch8t microsatellite sequence.-
14319511609609 1.000- 0.000Lynx rufus clone bch7t microsatellite sequence.-
14419611437437 1.000- 0.000Lynx rufus clone bcg11d microsatellite sequence.-
14519711698698 1.000- 0.000Lynx rufus clone bcg7t microsatellite sequence.-
14619811306306 1.000- 0.000Lynx rufus clone bcg4t microsatellite sequences.-
14719911225225 1.000- 0.000Lynx rufus clone bcf9d microsatellite sequences.-
14820011975975 1.000- 0.000Lynx rufus clone bcf8t microsatellite sequences.-
14920111566566 1.000- 0.000Lynx rufus clone bcf6t microsatellite sequences.-
15020211406406 1.000- 0.000Lynx rufus clone bcf2d microsatellite sequence.-
15120311438438 1.000- 0.000Lynx rufus clone bce9d microsatellite sequence.-
15220412545554 0.992- 0.000Lynx rufus clone bce3d microsatellite sequence.-
15320511256256 1.000- 0.000Lynx rufus clone bce1d microsatellite sequences.-
15420611359359 1.000- 0.000Lynx rufus clone bcd9d microsatellite sequence.-
15520712411505 0.907- 0.000Lynx rufus clone bcc7t microsatellite sequences.-
15620811705705 1.000- 0.000Lynx rufus clone bcd5t microsatellite sequence.-
15720911567567 1.000- 0.000Lynx rufus clone bcd4t microsatellite sequence.-
15821011391391 1.000- 0.000Lynx rufus clone bcd1d microsatellite sequences.-
15921111410410 1.000- 0.000Lynx rufus clone bcc10d microsatellite sequences.-
16021211428428 1.000- 0.000Lynx rufus clone bcc4t microsatellite sequence.-
16121311706706 1.000- 0.000Lynx rufus clone bcb10d microsatellite sequence.-
16221411430430 1.000- 0.000Lynx rufus clone bcb9d microsatellite sequence.-
16321511420420 1.000- 0.000Lynx rufus clone bca12d microsatellite sequence.-
16421611441441 1.000- 0.000Lynx rufus clone bc8bd microsatellite sequence.-
16521711389389 1.000- 0.000Lynx rufus clone bc8a microsatellite sequence.-
16621811440440 1.000- 0.000Lynx rufus clone bc2at microsatellite sequence.-
16721955738824 0.916- 0.000Panthera leo thiopurine S-methyltransferase mRNA, complete cds.
168220138463464 0.998- 0.000Lynx rufus isolate WY132 control region, partial sequence; mitochondrial.-
16925139881954 0.987- 0.000Panthera onca melanocortin-1 receptor (MC1R) gene, complete cds.-
17030211229229 1.000- 0.000Leptailurus serval GTP-binding protein (RAB1A) mRNA, 3' untranslated region.-
1712241110511051 1.000- 0.000Felis sp. NG192 DNA, INT292 locus sequence.-
1722251115181518 1.000- 0.000Felis sp. NG192 DNA, INT1193 locus sequence.-
17322611829829 1.000- 0.000Felis sp. NG192 DNA, INT1095 locus sequence.-
17422711820820 1.000- 0.000Felis sp. NG192 ATP6AP2 gene, INT0964 locus sequence.-
1752281111001100 1.000- 0.000Felis sp. NG192 FLJ21616 gene, INT1067 locus sequence.-
17622911631631 1.000- 0.000Felis sp. NG192 SCUBE3 gene, INT1075 locus sequence.-
17723011531531 1.000- 0.000Felis sp. NG192 MAEL gene, INT1111 locus sequence.-
17823111250250 1.000- 0.000Felis sp. NG192 EPC1 gene, INT1124 locus sequence.-
1792321110261026 1.000- 0.000Felis sp. NG192 COL3A1 gene, INT1167 locus sequence.-
1802331112561256 1.000- 0.000Felis sp. NG192 EPB41L4A gene, INT1189 locus sequence.-
18123411416416 1.000- 0.000Felis sp. NG192 KIF2 gene, INT1068 locus sequence.-
1822351110941094 1.000- 0.000Felis sp. NG192 LTBP1 gene, INT1098 locus sequence.-
18323611722722 1.000- 0.000Felis sp. NG192 DDX42 gene, INT1122 locus sequence.-
18423711787787 1.000- 0.000Felis sp. NG192 WDR44 gene, INT1233 locus sequence.-
18523811718718 1.000- 0.000Felis sp. NG192 NNT gene, INT276 locus sequence.-
18623911696696 1.000- 0.000Felis sp. NG192 ACSL5 gene, INT391 locus sequence.-
18724011221221 1.000- 0.000Felis silvestris silvestris voucher FSI880 interphotoreceptor retinoid-binding protein (IRBP) gene, exon 1 and partial cds.-
18824122548548 1.000- 0.000Panthera leo beta-fibrinogen gene, intron 4.-
18924233608613 0.995- 0.000Panthera leo sex-determining region Y protein (sry) gene, partial sequence.-
19024311893893 1.000- 0.000Panthera leo melanocortin 4 receptor (MC4R) gene, partial cds.-
19124411909909 1.000- 0.000Panthera leo arginine vasopressin receptor 2 (AVPR2) gene, partial cds.-
19224513169169 1.000- 0.000Panthera leo haplotype T2 transferrin (TF) gene, intron 3.-
19324615425427 0.999- 0.000Panthera leo haplotype A4 adenosine deaminase (ADA) gene, exon 10 and partial cds.-
1942471113221322 1.000- 0.000Panthera leo haplotype S1 sex-determining region Y protein (SRY) gene, partial cds.-
1952482410621689 0.749- 0.000Panthera leo chemokine receptor CXCR4 (CXCR4) mRNA, complete cds.-
196249238131057 0.847- 0.000Panthera leo CD134 (TNFRSF4) mRNA, complete cds.-
197250238153193 0.926- 0.000Panthera onca mesembrina control region, partial sequence; mitochondrial.-
198252259696 1.000- 0.000Panthera onca isolate H1 ATP synthase subunit 6 (ATP6) gene, partial cds; mitochondrial.-
199253133115115 1.000- 0.000Panthera pardus isolate SHO6 mitochondrial control region, partial sequence.-
20025447336337 0.997- 0.000Panthera pardus specimen-voucher Jinqianbao control region, partial sequence; mitochondrial.
201255211280280 1.000- 0.000Panthera tigris altaica mitochondrial cytb gene for cytochrome b, partial cds, specimen_voucher:bl.4034 (San Diego Zoo stock).-
2022561211801522 0.888- 0.000Panthera tigris altaica isolate S12 mitochondrial D-loop, complete sequence.-
2031512137137 1.000- 0.000Panthera tigris altaica isolate S12 tRNA-Thr and tRNA-Pro genes, mitochondrial genes for mitochondrial RNA, complete sequence.-
204257125400400 1.000- 0.000Panthera tigris haplotype SUM6 cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial.-
20515490179251 0.888- 0.000Panthera tigris sondaica voucher 65.111.1 control region, partial sequence; mitochondrial.
206258125347347 1.000- 0.000Panthera tigris haplotype SUM8 NADH dehydrogenase subunit 1 (NADH1) gene, partial cds; mitochondrial.-
2071416453841044 0.640- 0.000Felis silvestris specimen-voucher SDZ-32188 NADH dehydrogenase subunit 2 (ND2) gene, complete cds; mitochondrial gene for mitochondrial product.
208259226442496 0.895- 0.000Panthera tigris corbetti mitochondrial partial nd2 gene for NADH dehydrogenase subunit 2, isolate Hanoi Zoo.-
209260262482535 0.927- 0.000Panthera tigris tigris isolate WII/WFC/R-1188 NADH dehydrogenase subunit 5 (NADH5) gene, partial cds; mitochondrial.-
210261125509509 1.000- 0.000Panthera tigris haplotype AMO1 NADH dehydrogenase subunit 5 (NADH5) gene, partial cds; mitochondrial.-
211262125369369 1.000- 0.000Panthera tigris haplotype COR8 NADH dehydrogenase subunit 6 (NADH6) gene, partial cds; mitochondrial.-
21226311535535 1.000- 0.000Panthera tigris 12S ribosomal RNA gene, partial sequence; mitochondrial.-
21326437304314 0.973- 0.000Panthera tigris isolate Pts ATP synthase F0 subunit 8-like (ATP8) gene, partial sequence; and ATP synthase F0 subunit 6 (ATP6) gene, partial cds; mitochondrial.-
21426511746746 1.000- 0.000Panthera tigris internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence.-
21526612181257 0.852- 0.000Panthera tigris sumatrae clone 6HDZ3 microsatellite sequence.-
21626711204204 1.000- 0.000Panthera tigris sumatrae clone 6HDZ317 microsatellite sequence.-
21726811182182 1.000- 0.000Panthera tigris sumatrae clone 6HDZ56 microsatellite sequence.-
21826911177177 1.000- 0.000Panthera tigris sumatrae clone 6HDZ610 microsatellite sequence.-
21927011167167 1.000- 0.000Panthera tigris sumatrae clone 6HDZ64 microsatellite sequence.-
22027122116137 0.923- 0.000Panthera tigris sumatrae clone 6HDZ700 microsatellite sequence.-
22127211224224 1.000- 0.000Panthera tigris sumatrae clone 6HDZ817 microsatellite sequence.-
22227311218218 1.000- 0.000Panthera tigris sumatrae clone 6HDZ89 microsatellite sequence.-
22327422129138 0.967- 0.000Panthera tigris sumatrae clone 6HDZ989 microsatellite sequence.-
22427511151151 1.000- 0.000Panthera tigris sumatrae clone 6HDZ993 microsatellite sequence.-
22527611180180 1.000- 0.000Panthera tigris sumatrae microsatellite 6HDZ635 sequence.-
22627711117117 1.000- 0.000Panthera tigris sumatrae clone 6HDZ275 microsatellite sequence.-
22727811192192 1.000- 0.000Panthera tigris sumatrae clone 6HDZ378 microsatellite sequence.-
22827911119119 1.000- 0.000Panthera tigris sumatrae clone 6HDZ463 microsatellite sequence.-
22928011163163 1.000- 0.000Panthera tigris sumatrae clone 6HDZ481 microsatellite sequence.-
23028111100100 1.000- 0.000Panthera tigris sumatrae clone 6HDZ57 microsatellite sequence.-
23128211219219 1.000- 0.000Panthera tigris sumatrae clone 6HDZ170 microsatellite sequence.-
23228311267267 1.000- 0.000Panthera tigris sumatrae clone 6HDZ859 microsatellite sequence.-
23328411132132 1.000- 0.00012S rRNA [Smilodon fatalis=saber-toothed cats, Mitochondrial, 132 nt].-
23428511804804 1.000- 0.000Uncia uncia recombination activating protein 1 (RAG-1) gene, partial cds.-
23528611441441 1.000- 0.000Uncia uncia k-casein gene, exon 4, partial cds.-
23628711436436 1.000- 0.000Uncia uncia b-casein gene, exon 7, partial cds.-
23728811153153 1.000- 0.000Uncia uncia isolate LD03 control region, partial sequence; mitochondrial.-
23828922137220 0.811- 0.000Uncia uncia microsatellite PUN327 sequence.-
239290119999 1.000- 0.000Uncia uncia microsatellite PUN229 sequence.-
24029111174174 1.000- 0.000Uncia uncia isolate PUN0001 clone 1 PUN275-amplified repetitive region.-
24129211187187 1.000- 0.000Uncia uncia isolate PUN0001 clone 3 PUN171-amplified repetitive region.-
24229322217336 0.823- 0.000Uncia uncia microsatellite PUN225 sequence.-
24329411276276 1.000- 0.000Uncia uncia isolate PUN0001 clone 2 PUN171-amplified repetitive region.-
24429511201201 1.000- 0.000Uncia uncia isolate PUN0001 clone 1 PUN171-amplified repetitive region.-
24529622231401 0.788- 0.000Uncia uncia microsatellite PUN124 sequence.-
24629711199199 1.000- 0.000Uncia uncia microsatellite PUN132 sequence.-
24729822143193 0.871- 0.000Uncia uncia microsatellite PUN100 sequence.-
24829911168168 1.000- 0.000Uncia uncia microsatellite PUN88 sequence.-
249300312153279 0.650- 0.000Uncia uncia microsatellite PUN96 sequence.-
25030138186322 0.672- 0.000Uncia uncia microsatellite PUN82 sequence.-
25130311220220 1.000- 0.000Neofelis nebulosa voucher Nne80 NADH dehydrogenase subunit 5 (NADH5) gene, partial cds; mitochondrial.-
25230433669811 0.891- 0.000Panthera leo persica mitochondrial D-loop, partial sequence.-
25330512390390 1.000- 0.000Panthera tigris altaica follicle stimulating hormone beta subunit precursor, mRNA, complete cds.-
25430623429432 0.995- 0.000Panthera tigris altaica luteinizing hormone beta subunit (LH) mRNA, complete cds.-
25530723363462 0.857- 0.000Panthera tigris altaica glycoprotein hormone alpha subunit (GPH) mRNA, complete cds.-
25630811345345 1.000- 0.000Panthera tigris altaica specimen-voucher Dongbeihu NADH dehydrogenase subunit 5 gene, partial cds; mitochondrial.-
25730911555555 1.000- 0.000Panthera tigris altaica specimen-voucher Dongbeihu control region, partial sequence; mitochondrial.-
25831011521521 1.000- 0.000Panthera tigris altaica insulin-like growth factor I precursor, mRNA, complete cds.-
25931112204204 1.000- 0.000Panthera tigris altaica Sox3 protein (Sox3) gene, partial cds.-
26031212204204 1.000- 0.000Panthera tigris altaica Sox4 protein (Sox4) gene, partial cds.-
26131311550550 1.000- 0.000Panthera tigris altaica clone Pti01 microsatellite sequence.-
26231412321324 0.995- 0.000Panthera tigris altaica clone Pti02 microsatellite sequence.-
26331511321321 1.000- 0.000Panthera tigris altaica clone Pti03 microsatellite sequence.-
26431612605934 0.824- 0.000Panthera tigris altaica clone Pti08 microsatellite sequence.-
26531711503503 1.000- 0.000Panthera tigris altaica clone Pti05 microsatellite sequence.-
26631811455455 1.000- 0.000Panthera tigris altaica clone Pti06 microsatellite sequence.-
26731911701701 1.000- 0.000Panthera tigris altaica clone Pti07 microsatellite sequence.-
26832011434434 1.000- 0.000Panthera tigris altaica clone Pti09 microsatellite sequence.-
26932111629629 1.000- 0.000Panthera tigris altaica clone Pti10 microsatellite sequence.-
27032211488488 1.000- 0.000Panthera tigris altaica clone Pti11 microsatellite sequence.-
27132311433433 1.000- 0.000Panthera tigris altaica clone Pti13 microsatellite sequence.-
27232411534534 1.000- 0.000Panthera tigris altaica clone Pti14 microsatellite sequence.-
27332511536536 1.000- 0.000Panthera tigris altaica clone Pti15 microsatellite sequence.-
27432612354358 0.994- 0.000Panthera tigris altaica clone Pti19 microsatellite sequence.-
27532711511511 1.000- 0.000Panthera tigris altaica clone Pti17 microsatellite sequence.-
27632811359359 1.000- 0.000Panthera tigris altaica clone Pti18 microsatellite sequence.-
27732911541541 1.000- 0.000Panthera tigris altaica clone Pti20 microsatellite sequence.-
27833011380380 1.000- 0.000Panthera tigris altaica clone Pti21 microsatellite sequence.-
27933139561561 1.000- 0.000Panthera tigris tigris isolate Ptt03 NADH dehydrogenase subunit 4 gene, partial cds; mitochondrial.-
28033211810810 1.000- 0.000Panthera tigris altaica cytochrome oxidase subunit I (COI) gene, partial cds; and tRNA-Tyr gene, partial sequence; mitochondrial.-
28133322634949 0.834- 0.000Panthera tigris altaica clone DBH0901 ferritin (FTH1) mRNA, complete cds.-
28233411524524 1.000- 0.000Panthera tigris altaica clone DBH0903 ribosomal protein L23 (L23) mRNA, complete cds.-
2833351111591159 1.000- 0.000Panthera tigris altaica microsatellite Pti63 sequence.-
2843361112161216 1.000- 0.000Panthera tigris altaica microsatellite Pti13 sequence.-
2853371110731073 1.000- 0.000Panthera tigris altaica microsatellite Pti17 sequence.-
28633811538538 1.000- 0.000Panthera tigris altaica microsatellite Pti12 sequence.-
2873391111341134 1.000- 0.000Panthera tigris altaica microsatellite Pti21 sequence.-
28834011323323 1.000- 0.000Panthera tigris altaica microsatellite Pti18 sequence.-
28934111724724 1.000- 0.000Panthera tigris altaica microsatellite Pti24 sequence.-
29034211345345 1.000- 0.000Panthera tigris altaica microsatellite Pti25 sequences.-
29134311594594 1.000- 0.000Panthera tigris altaica microsatellite Pti27 sequences.-
29234411340340 1.000- 0.000Panthera tigris altaica microsatellite Pti89 sequences.-
29334511611611 1.000- 0.000Panthera tigris altaica microsatellite Pti85 sequence.-
29434611699699 1.000- 0.000Panthera tigris altaica microsatellite Pti5 sequence.-
29534711521521 1.000- 0.000Panthera tigris altaica microsatellite Pti98 sequence.-
29634811549549 1.000- 0.000Panthera tigris altaica microsatellite Pti34 sequence.-
29734911528528 1.000- 0.000Panthera tigris altaica microsatellite Pti20 sequence.-
2983501110531053 1.000- 0.000Panthera tigris altaica microsatellite Pti71 sequence.-
29935111917917 1.000- 0.000Panthera tigris altaica microsatellite Pti15 sequence.-
30035211558558 1.000- 0.000Panthera tigris altaica microsatellite Pti62 sequence.-
30135311683683 1.000- 0.000Panthera tigris altaica microsatellite Pti42 sequence.-
30235411463463 1.000- 0.000Panthera tigris altaica microsatellite Pti36 sequence.-
30335511619619 1.000- 0.000Panthera tigris altaica microsatellite Pti46 sequence.-
30435612636858 0.871- 0.000Panthera tigris altaica microsatellite Pti19 sequence.-
3053571112791279 1.000- 0.000Panthera tigris altaica microsatellite Pti31 sequences.-
30635811909909 1.000- 0.000Panthera tigris altaica microsatellite Pti32 sequences.-
3073592219311932 1.000- 0.000Panthera tigris tigris butyrylcholinesterase precursor (BCHE) mRNA, complete cds.-
308360121131131 1.000- 0.000Panthera tigris tigris isolate TIG13 NADH dehydrogenase subunit 2 gene, partial cds; mitochondrial.-
30936111261261 1.000- 0.000Panthera tigris tigris clone PttF4 microsatellite sequence.-
31036211146146 1.000- 0.000Panthera tigris tigris clone PttG4 microsatellite sequence.-
31136311190190 1.000- 0.000Panthera tigris tigris clone Ptt10H microsatellite sequence.-
31236411299299 1.000- 0.000Panthera tigris tigris clone PttGA2 microsatellite sequence.-
31336511465465 1.000- 0.000Panthera tigris tigris clone PttD5 microsatellite sequence.-
31436611152152 1.000- 0.000Panthera tigris tigris clone PttD6 microsatellite sequence.-
31536711236236 1.000- 0.000Panthera tigris tigris clone PttE5 microsatellite sequence.-
31636811266266 1.000- 0.000Panthera tigris tigris clone PttF1 microsatellite sequence.-
31736911154154 1.000- 0.000Panthera tigris tigris clone PttB2 microsatellite sequence.-
31837011334334 1.000- 0.000Panthera tigris tigris clone PttB3 microsatellite sequence.-
31937111314314 1.000- 0.000Panthera tigris tigris clone PttC6 microsatellite sequence.-
32037211292292 1.000- 0.000Panthera tigris tigris clone Ptt11G microsatellite sequence.-
32137311150150 1.000- 0.000Panthera tigris tigris clone Ptt4A microsatellite sequence.-
32237411241241 1.000- 0.000Panthera tigris tigris clone PttA2 microsatellite sequence.-
32337511366366 1.000- 0.000Panthera tigris tigris clone PttA4 microsatellite sequence.-
32437614145145 1.000- 0.000Panthera tigris tigris haplotype TIG*8 12S ribosomal RNA gene, partial sequence; mitochondrial.-
32537711132132 1.000- 0.000Panthera leo persica MHC class I antigen gene, partial cds.-
32637811343343 1.000- 0.000Panthera leo persica microsatellite CA20 sequence.-
32737911209209 1.000- 0.000Panthera leo persica microsatellite GA12 sequence.-
32838011441441 1.000- 0.000Panthera leo persica isolate Ple30 microsatellite CA13 sequence.-
32938111564564 1.000- 0.000Panthera leo persica isolate Ple46 microsatellite CA22 sequence.-
33038211469469 1.000- 0.000Panthera leo persica isolate Ple51 microsatellite CT28 sequence.-
33138311570570 1.000- 0.000Panthera leo persica isolate Ple55 microsatellite CA16 sequence.-
33238411531531 1.000- 0.000Panthera leo persica isolate Ple57 microsatellite CA20 sequence.-
33338511519519 1.000- 0.000Panthera leo persica isolate Ple37 microsatellite GT18 sequence.-
33438611325325 1.000- 0.000Panthera leo persica isolate Ple495 microsatellite GTG7 sequence.-
33538711324324 1.000- 0.000Panthera leo persica isolate Ple54 microsatellite CA16 sequence.-
33638811506506 1.000- 0.000Panthera leo persica microsatellite Ple18 sequence.-
33738911455455 1.000- 0.000Panthera leo persica microsatellite Ple19 sequence.-
33839011385385 1.000- 0.000Panthera leo persica microsatellite Ple21 sequence.-
33939111317317 1.000- 0.000Panthera leo persica microsatellite Ple22 sequence.-
34039211145145 1.000- 0.000Panthera leo persica microsatellite Ple34 sequence.-
34139311487487 1.000- 0.000Panthera leo persica microsatellite Ple38 sequence.-
34239411386386 1.000- 0.000Panthera leo persica microsatellite Ple40 sequence.-
34339511214214 1.000- 0.000Panthera leo persica microsatellite Ple44 sequence.-
34439611679679 1.000- 0.000Panthera leo persica microsatellite Ple52 sequence.-
34539711416416 1.000- 0.000Panthera leo persica microsatellite Ple53 sequence.-
34639811275275 1.000- 0.000Panthera leo persica microsatellite Ple56 sequence.-
34739911655655 1.000- 0.000Panthera leo persica microsatellite Ple58 sequence.-
34840011378378 1.000- 0.000Panthera leo persica microsatellite Ple62 sequence.-
34940111216216 1.000- 0.000Panthera leo persica microsatellite Ple65 sequence.-
35040211318318 1.000- 0.000Panthera leo persica microsatellite Ple86 sequence.-
35140311377377 1.000- 0.000Panthera leo persica microsatellite Ple96 sequence.-
35240411332332 1.000- 0.000Panthera leo persica microsatellite Ple251 sequence.-
35340511653653 1.000- 0.000Panthera leo persica microsatellite Ple487 sequence.-
35440611398398 1.000- 0.000Panthera leo persica microsatellite Ple523 sequence.-
35540711621621 1.000- 0.000Panthera leo persica microsatellite Ple537 sequence.-
35640811370370 1.000- 0.000Panthera leo persica microsatellite Ple569 sequence.-
35740911304304 1.000- 0.000Panthera tigris amoyensis clone 2-1c microsatellite sequence.-
35841011303303 1.000- 0.000Panthera tigris amoyensis clone 1-3b microsatellite sequence.-
35941111278278 1.000- 0.000Panthera tigris amoyensis clone 2-1a microsatellite sequence.-
36041211313313 1.000- 0.000Panthera tigris amoyensis clone 4-1c microsatellite sequence.-
36141311263263 1.000- 0.000Panthera tigris amoyensis clone 3-5f microsatellite sequence.-
36241411264264 1.000- 0.000Panthera tigris amoyensis clone 4-4g microsatellite sequence.-
36347411145145 1.000- 0.000Miracinonyx trumani isolate NTC43093 12S ribosomal RNA gene, partial sequence; nuclear copy of mitochondrial sequence.-
3644151116891689 1.000- 0.000Panthera leo bleyenberghi partial cryaa gene for putative crystallin, alpha A, exons 1-2.-
3654161117421742 1.000- 0.000Panthera leo bleyenberghi partial cryab gene for putative crystallin, alpha B, exons 1-2.-
36641711314314 1.000- 0.000Panthera leo bleyenberghi partial crybb2 gene for putative crystallin, beta B2, exon 2.-
367881128212821 1.000- 0.000Panthera leo krugeri G-protein coupled receptor (Tas1r2) pseudogene, partial sequence.-

  1 Maximum Alignment Density
  2 "Q" alignment comparison score between default Clustal W and Muscle alignments
  3 Level of resolution (consensus fork index) of the strict consensus tree built from the two bootstrap trees from Clustal W and Muscle alignments.
  4 Trees are unrooted majority rule consensus trees from 'fast bootstrap parsimony' algorithm in PAUP* 4.0 using default ClustalW alignments. Expect performance to deteriorate with low MAD or Q scores, large number of taxa, and high sequence divergence (largely owing to alignment problems). Only trees for (taxon) phylogenetically informative clusters with fewer than 1000 sequences are generated.


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