Cluster set at subtree whose root is 'Felidae'

Click here to see taxon by cluster Data Availability Matrix
Cluster IDParent clusterTaxIDsGIsLminLmaxMAD1Q2Tcfi3Defline of longest sequenceTree4
0814192270614 0.620- 0.000Panthera pardus 16S ribosomal RNA gene, partial sequence; mitochondrial.
19541225220611 0.765- 0.000Panthera pardus isolate SHO12 NADH dehydrogenase subunit 5 (NADH5) gene, partial cds; mitochondrial gene for mitochondrial product.
243651496885 0.971- 0.000Panthera tigris TTR gene, partial sequence.
49766185188 0.996- 0.000Felis margarita SINE element in Zfy gene, complete sequence.
553265211551181 0.997- 0.000Neofelis nebulosa strain nnex zinc finger protein Zfx (Zfx) gene, partial cds.
7992717364355 0.553- 0.000Felis libyca mitochondrial COII gene (partial), atpase8 gene, atpase6 gene (partial) and tRNA-Lys gene, isolate 7.
81521411190810 0.553- 0.000Prionailurus bengalensis mitochondrial DNA, D-loop region, haplotype: FDS2.
9021288321274 0.921- 0.000Panthera pardus interphotoreceptor retinoid-binding protein (irbp) gene, partial cds.
103394061001760 0.389- 0.000Panthera leo isolate P88017 from Morocco cytochrome b gene, complete cds; tRNA-Thr and tRNA-Pro genes, complete sequence; and control region, partial sequence; mitochondrial.
1210136367912567 0.372- 0.000Felis libyca Smcy gene, intron 4, complete sequence.
1310235359401197 0.806- 0.000Otocolobus manul Ube1y gene, exon 18 and partial cds.
141033839713969 0.795- 0.000Felis silvestris Zfy gene, intron.
154455429435 0.994- 0.000Leopardus pardalis thyroxine-binding globulin (TBG) gene, partial sequence.
16263740638643 0.996- 0.000Panthera onca amyloid beta precursor protein (APP) gene, partial cds.
17223946235332 0.974- 0.000Panthera leo cholinergic receptor nicotinic alpha polypeptide 1 precursor (CHRNA1) gene, partial cds.
1828383813591373 0.997- 0.000Otocolobus manul CLU gene, partial sequence.
19503737515518 1.000- 0.000Uncia uncia CMA1 (CMA1) gene, partial cds.
20293737702715 0.987- 0.000Catopuma badia DGKG2 gene, partial sequence.
21303636243413 0.984- 0.000Felis bieti FES gene, partial sequence.
22313737440457 0.966- 0.000Panthera tigris GATA3 gene, partial sequence.
23323737665670 1.000- 0.000Leopardus tigrinus GHR (GHR) gene, partial cds.
24333838622622 1.000- 0.000Otocolobus manul GNAZ (GNAZ) gene, partial cds.
251043838206357 0.966- 0.000Lynx canadensis HK1 gene, partial sequence.
26353838294296 0.999- 0.000Oncifelis guigna NCL (NCL) gene, partial cds.
27363838290290 1.000- 0.000Leopardus tigrinus PNOC (PNOC) gene, partial cds.
28373842423777 0.614- 0.000Lynx lynx RAG2 (RAG2) gene, partial cds.
29383838548552 0.998- 0.000Felis nigripes RSA2 gene, partial sequence.
30393838371372 0.998- 0.000Otocolobus manul SIL gene, partial sequence.
31403737585601 0.985- 0.000Prionailurus bengalensis TCP1 (TCP1) gene, partial cds.
32513838319513 0.988- 0.000Felis libyca ALAS gene, partial sequence.
33413838670670 1.000- 0.000Leptailurus serval ATP-7A (ATP7A) gene, partial cds.
34423838318319 0.997- 0.000Oreailurus jacobita IL2RG (IL2RG) gene, partial cds.
35433636766900 0.991- 0.000Pardofelis marmorata PLP gene, partial sequence.
361053841823847 0.995- 0.000Felis chaus isolate Fch ZFX gene, intron.
37106363718952792 0.969- 0.000Acinonyx jubatus sex-determining region Y protein (SRY) gene, complete cds.
381077195611882 0.795- 0.000Panthera leo haplotype H1 12S ribosomal RNA gene, partial sequence; tRNA-Val gene, complete sequence; and 16S ribosomal RNA gene, partial sequence; mitochondrial.
4054596091140 0.587- 0.000Felis silvestris isolate N51 cytochrome b (cytb) gene, complete cds; mitochondrial.
491161111188287 0.928- 0.000Panthera tigris amoyensis microsatellite PTA sequence.
5011718303235238 0.999- 0.000Leopardus wiedii MHC class II DR antigen beta subunit (Lewi-DRB) gene, Lewi-DRB*0221 allele, exon 2 and partial cds.
548222763421025 0.481- 0.000Panthera onca 12S ribosomal RNA gene, partial sequence; and tRNA-Val gene, complete sequence; mitochondrial genes for mitochondrial products.
5551111654893 0.781- 0.000Otocolobus manul beta fibrinogen gene, intron 7.
566131513681378 0.994- 0.000Lynx canadensis NADH dehydrogenase subunit 4 (ND4) gene, complete cds; mitochondrial.
571211014567567 1.000- 0.000Uncia uncia isolate 7 follicle stimulating hormone receptor (FSHR) mRNA, partial cds.
58273434813821 0.995- 0.000Profelis aurata CALB gene, partial sequence.
59343434573674 0.977- 0.000Felis bieti GNB1 gene, partial sequence.
61123614549870 0.687- 0.000Lynx lynx isolate 2 apolipoprotein B editing enzyme catalytic polypeptide-like 3C mRNA, complete cds, alternatively spliced.
62124675821119 0.617- 0.000Panthera leo bleyenberghi apolipoprotein B editing enzyme catalytic polypeptide-like 3H mRNA, complete cds.
6312511236631545 0.609- 0.000Prionailurus viverrinus isolate FCCOI cytochrome c oxidase subunit I (COX1) gene, complete cds; mitochondrial.
712479446652 0.933- 0.000Lynx canadensis growth hormone receptor (GHR) gene, partial cds.
744599178179 0.999- 0.000Acinonyx jubatus isolate D26 CD44 gene, exon v3 and partial cds, alternatively spliced.
751355613141616 0.844- 0.000Panthera tigris corbetti apolipoprotein B mRNA editing enzyme catalytic polypeptide 3 mRNA, complete cds.
77137691255917047 0.939- 0.000Acinonyx jubatus mitochondrion, complete genome.
7813879887927 0.975- 0.000Felis margarita Hox8 early enhancer sequence.
79139977185527 0.857- 0.000Panthera onca isolate Pon30 mitochondrial control region, partial sequence.
8214179712987 0.954- 0.000Uncia uncia G protein-coupled receptor 33 (GPR33) gene, GPR33-A allele, partial sequence.
8314277327361 0.972- 0.000Acinonyx jubatus EPM2B gene repeat region, partial sequence.
87146813339950 0.816- 0.000Lynx rufus prion protein (PRNP) gene, complete cds.
8919137721112 0.916- 0.000Panthera tigris RAG1 gene, partial cds, isolate: HS1201.
90289938963 0.996- 0.000Prionailurus iriomotensis APOB gene for apolipoprotein B, partial cds, specimen_voucher: personal:Hitoshi Suzuki:HS599.
91148920875221 0.838- 0.000Leopardus tigrinus isolate bLti10 control region, partial sequence; mitochondrial.
921499145187266 0.960- 0.000Panthera leo persica clone M622 MHC class I antigen gene, exon 2 and partial cds.
931509109218246 0.980- 0.000Panthera leo persica clone FS922 MHC class I antigen gene, exon 3 and partial cds.
108177710431043 1.000- 0.000Panthera pardus brca1 gene for breast and ovarian cancer susceptibility protein 1, partial cds, specimen_voucher: personal:Hitoshi Suzuki:HS1203.
109188911911209 0.987- 0.000Prionailurus bengalensis vwf gene for von Willebrand factor, partial cds, specimen_voucher: personal:Hitoshi Suzuki:HS1021.
11316848106133 0.886- 0.000Felis chaus isolate WII/WFC/R-299 cytochrome b gene, partial cds; mitochondrial.
12417955684684 1.000- 0.000Catopuma temminckii isolate AGCCOII cytochrome c oxidase subunit II (COX2) gene, complete cds; mitochondrial.
127182510347459 0.949- 0.000Panthera tigris altaica isolate Pta01 NADH dehydrogenase subunit 3 (ND3) gene, partial cds; tRNA-Arg gene, complete sequence; and NADH dehydrogenase subunit 4L (ND4L) gene, partial cds; mitochondrial.
13318566272272 1.000- 0.000Panthera tigris altaica rhodopsin (RHO1) gene, partial cds.
16721955738824 0.916- 0.000Panthera leo thiopurine S-methyltransferase mRNA, complete cds.
20025447336337 0.997- 0.000Panthera pardus specimen-voucher Jinqianbao control region, partial sequence; mitochondrial.
20515490179251 0.888- 0.000Panthera tigris sondaica voucher 65.111.1 control region, partial sequence; mitochondrial.
2071416453841044 0.640- 0.000Felis silvestris specimen-voucher SDZ-32188 NADH dehydrogenase subunit 2 (ND2) gene, complete cds; mitochondrial gene for mitochondrial product.

  1 Maximum Alignment Density
  2 "Q" alignment comparison score between default Clustal W and Muscle alignments
  3 Level of resolution (consensus fork index) of the strict consensus tree built from the two bootstrap trees from Clustal W and Muscle alignments.
  4 Trees are unrooted majority rule consensus trees from 'fast bootstrap parsimony' algorithm in PAUP* 4.0 using default ClustalW alignments. Expect performance to deteriorate with low MAD or Q scores, large number of taxa, and high sequence divergence (largely owing to alignment problems). Only trees for (taxon) phylogenetically informative clusters with fewer than 1000 sequences are generated.

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