Cluster set at subtree whose root is 'Felis'

Click here to see taxon by cluster Data Availability Matrix
Cluster IDParent clusterTaxIDsGIsLminLmaxMAD1Q2Tcfi3Defline of longest sequenceTree4
00610326614 0.672- 0.000Felis nigripes 16S ribosomal RNA gene, mitochondrial gene for mitochondrial RNA, partial sequence.
1166318318 1.000- 0.000Felis chaus NADH dehydrogenase subunit 5 gene, partial cds; mitochondrial.
2269496885 0.928- 0.000Felis libyca TTR gene, partial sequence.
4444187188 0.999- 0.000Felis margarita SINE element in Zfy gene, complete sequence.
884208328546 0.833- 0.000Felis silvestris partial mitochondrial control region, isolate 1.
11114510321274 0.867- 0.000Felis bieti interphotoreceptor retinoid-binding protein (irbp) gene, partial cds.
14147710712567 0.558- 0.000Felis libyca Smcy gene, intron 4, complete sequence.
151577953962 0.998- 0.000Felis nigripes Ube1y gene, exon 18 and partial cds.
161677961969 0.998- 0.000Felis silvestris Zfy gene, intron.
181878639641 0.998- 0.000Felis chaus APP gene, partial sequence.
191978322326 0.999- 0.000Felis margarita CHRNA1 gene, partial sequence.
20207713691369 1.000- 0.000Felis nigripes CLU gene, partial sequence.
212166518518 1.000- 0.000Felis nigripes CMA1 (CMA1) gene, partial cds.
222277705706 1.000- 0.000Felis margarita DGKG2 gene, partial sequence.
232377412413 0.999- 0.000Felis libyca FES gene, partial sequence.
242477441442 0.998- 0.000Felis bieti GATA3 gene, partial sequence.
252577665670 0.999- 0.000Felis margarita GHR (GHR) gene, partial cds.
262677622622 1.000- 0.000Felis nigripes GNAZ (GNAZ) gene, partial cds.
272777349349 1.000- 0.000Felis chaus HK1 gene, partial sequence.
282877294296 0.994- 0.000Felis nigripes NCL (NCL) gene, partial cds.
292977290290 1.000- 0.000Felis chaus PNOC (PNOC) gene, partial cds.
303079444777 0.648- 0.000Felis chaus RAG2 (RAG2) gene, partial cds.
313177551552 0.998- 0.000Felis nigripes RSA2 gene, partial sequence.
323277371371 1.000- 0.000Felis chaus SIL gene, partial sequence.
333366590595 0.998- 0.000Felis bieti TCP1 (TCP1) gene, partial cds.
343477513513 1.000- 0.000Felis margarita ALAS gene, partial sequence.
353577670670 1.000- 0.000Felis nigripes ATP-7A (ATP7A) gene, partial cds.
363677318318 1.000- 0.000Felis libyca IL2RG (IL2RG) gene, partial cds.
373777899899 1.000- 0.000Felis margarita PLP gene, partial sequence.
383877840847 0.996- 0.000Felis chaus isolate Fch ZFX gene, intron.
39397818952743 0.954- 0.000Felis chaus sex-determining region Y protein (SRY) gene, complete cds.
4141616418402604 0.980- 0.000Felis silvestris isolate Fsi48 NADH dehydrogenase subunit 5 (ND5) gene, partial cds; NADH dehydrogenase subunit 6 (ND6) gene, complete cds; tRNA-Glu gene, complete sequence; and cytochrome b (cytB) gene, partial cds; mitochondrial.
556166674674 1.000- 0.000Felis bieti GNB1 gene, partial sequence.

  1 Maximum Alignment Density
  2 "Q" alignment comparison score between default Clustal W and Muscle alignments
  3 Level of resolution (consensus fork index) of the strict consensus tree built from the two bootstrap trees from Clustal W and Muscle alignments.
  4 Trees are unrooted majority rule consensus trees from 'fast bootstrap parsimony' algorithm in PAUP* 4.0 using default ClustalW alignments. Expect performance to deteriorate with low MAD or Q scores, large number of taxa, and high sequence divergence (largely owing to alignment problems). Only trees for (taxon) phylogenetically informative clusters with fewer than 1000 sequences are generated.


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